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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0165500 |
| Transcript ID | LotjaGi2g1v0165500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710; TrEMBL-Plants: tr|G7KKI6|G7KKI6_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi2g1v0165500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:57515293..57516278) extracted from Lotus japonicus Gifu genome v1.2.
GGTTTATGCAAATCAGGGAGAATCTCTCATGCTTGGGAGCTTGTTGATGAGATGCATGCTAGAGGTACACCACCTGATGT AATCACTTACAATTCTTTCTTGGATGCTTTATGCAAAAGCCACCATGTTGATAAGGGAATTGCTTTAATCAAGAAAATTA TAGACAAGGGTATTCAGCCAGATATGTGCACATACAATATACTTCTGGATGGACTATGCAAATGTGGTAGAATTAAGGAT GCACAAGAGGTTTTTCAGGATCTTTTTAAAAAAGGCTATAATTTGAATAACTGGACATATAATACTATGATCAATGGACT TTGTAAAGAGGGCTTGTTTGATGAAGCATTGACATTGATGTCGAAAATGGAAGGCAATAGTTGCATCCATGATCTAATAA CTTTTGAAACAATTATTTCTGCTCTTTTTGAAAAAGGTGAAAATGATAAGGCAGAGAAGCTTCTTCGTGAAATGATTGCT AGAGATCTATTGTGAAGGTAAAATTAGGTAAGAGGCTTTCTAATTACATGTTAAGTTACTTTTAATATTGATGAGGGCCA TCTATTTCTTATTCTTCTAATAGTTACACATAAAAAAGAAGACGAACTAAGCTTTTATTAAATTCAACCAACGAGAACAA GTACTGATATTTTCTTAAAGCTTATCTGTGCTCTTTTTAAAAAAAAAAAAACACTATAAGGTAAAACAACTTTTCATCAA ATGGTTGCTATAGGCTTACTGAAAGGATAAAAGAAGATGAAATTAAACATCTCAGTGCAATATCAAATTACATTAATGTT ACGGTTGAATTTCTCTGATTGGTTTGTAATTTTTTCATGGCTTAATAGCACTTTTGGTCCCCCACAAATGCAAAATGTGC AAATTGGGTCCCTAAACTTTAAAAATAGCATTCTGTCTCCCCGACGTTATCTTCTGTCAACAGTTTTGGTCCCCCGTCCT TTTTCCGTTCAAAAAGTAACGGTTTC
CDS sequence (LotjaGi2g1v0165500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATGCTAGAGGTACACCACCTGATGTAATCACTTACAATTCTTTCTTGGATGCTTTATGCAAAAGCCACCATGTTGA TAAGGGAATTGCTTTAATCAAGAAAATTATAGACAAGGGTATTCAGCCAGATATGTGCACATACAATATACTTCTGGATG GACTATGCAAATGTGGTAGAATTAAGGATGCACAAGAGGTTTTTCAGGATCTTTTTAAAAAAGGCTATAATTTGAATAAC TGGACATATAATACTATGATCAATGGACTTTGTAAAGAGGGCTTGTTTGATGAAGCATTGACATTGATGTCGAAAATGGA AGGCAATAGTTGCATCCATGATCTAATAACTTTTGAAACAATTATTTCTGCTCTTTTTGAAAAAGGTGAAAATGATAAGG CAGAGAAGCTTCTTCGTGAAATGATTGCTAGAGATCTATTGTGA
Protein sequence (LotjaGi2g1v0165500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHARGTPPDVITYNSFLDALCKSHHVDKGIALIKKIIDKGIQPDMCTYNILLDGLCKCGRIKDAQEVFQDLFKKGYNLNN WTYNTMINGLCKEGLFDEALTLMSKMEGNSCIHDLITFETIISALFEKGENDKAEKLLREMIARDLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 143 | 143 | 3.4E-37 | – | |
| Gene3D | 1 | 72 | 72 | 6.6E-22 | ||
| Pfam | 5 | 32 | 28 | 3.0E-6 | ||
| ProSiteProfiles | 9 | 43 | 35 | 11.849 | ||
| TIGRFAM | 11 | 44 | 34 | 1.3E-7 | ||
| Pfam | 43 | 92 | 50 | 6.5E-17 | ||
| ProSiteProfiles | 44 | 78 | 35 | 12.288 | ||
| TIGRFAM | 46 | 79 | 34 | 4.1E-7 | ||
| Gene3D | 73 | 145 | 73 | 7.1E-19 | ||
| ProSiteProfiles | 79 | 113 | 35 | 11.619 | ||
| TIGRFAM | 82 | 112 | 31 | 4.0E-10 | ||
| Pfam | 111 | 141 | 31 | 2.0E-7 | ||
| ProSiteProfiles | 114 | 147 | 34 | 9.799 | ||
| TIGRFAM | 116 | 146 | 31 | 3.1E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0165500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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