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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0167900 |
| Transcript ID | LotjaGi2g1v0167900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT2G40240.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9S733|PP196_ARATH Pentatricopeptide repeat-containing protein At2g40240, mitochondrial; TrEMBL-Plants: tr|A0A1J7I1I6|A0A1J7I1I6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0167900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:57891843..57900600) extracted from Lotus japonicus Gifu genome v1.2.
ATATGACCCTTTCATTCAATTTCATTTCACCGAACAGCACCTCACAGTCTCACTACTTCACTAACGATGTCGTTTTTACT AAAACGACCCAACAATTTTCTTAATTCCAACTCTATCCTCACCTTCACCCTTCGCCGCCTCACCACCCTCGCCGCGAAAC CCTTCCCCGACCACCCTACCTCCGCCTACTACGACGAACTCGCCGTCGAAGCCGGAACCTCCGGCGACCTCAACGCCCTC CGCGACATCCTCAACAAGCGCTTCCAAGACGGCTGCTTCAACACCAAGCACACCTTCAGCTTCATCACCGCCACCAACCT CACCTCCACCCTCATCGACGACGTCGTTCGCACCCTCTCTGGCCTCAACCCTGGCTTCACGCGCAAGAGCGCGTTCGAAT CCCTCGTCACGCGCCTATGCAAGCTCGAACGCGCCGACGACGCTCTCCAAGTGGTTGAATCCATGGCGGTTGAGGGAAGC TGCAGCCCCACCGCCTCCACGTTCAACCCTGTCCTCAGCCTCCTCACCAGGCAGAAATCGCTCGACGAGGCGCGGCGCGT GGAGGAACGCATGGCTGGATTCGGCTTGCGGCTCGACTTGACGGCTCACAACATGTTCCTCATGTCGTACTGCTTCTCCG GCGACCTGGAGGCGGCGGCCGGAGTTTTGAAGAGGATTGAGAATGAGGGTTTGGCGGCGGACCCCCGCACGTTTGACGCG CTGGTACTCGGCGCGTGTAAGGCAGGGGTGGTGGATGGTGCTATTGCGGTGGTGAGGAGAATGGTGGAAGATGGAGTGCC CATGTTGTATTCCACCCACATGTGTGTGATCACGACGTTACTGCGGATGAATTGCTACAAGCAAGCTAGAAAGTATGCTA GGAGTTTTGGTGGGAAGGATACAACTTTGGATACACAGCTTTTAGGGTGTTTGGGTAGTAAGCTTATGATGTTGAAGAAG GTTAAGGAGGCAATGTTAATTTTGGATGAAATGAACCAGAAGGGTTTGCCAATGGGTCAGAAATTGAAAGCATTTTATCT AAAGAATGCTGGAACTGTGAATGGTGTTAAAGGTAGGAACTAGGAATAGTGATTGATAGTGGAGTTGTAGAAGGAGGGAG TGAAGTTTAGTGGGAATGTGGAGAAGATGAAGAGCTAGTGTTATAATTTGTCCTCAGGTTAGTTCCATGATCCTTTATCT TTTCTGTTGTTCGAATTTGATGTTACATGCAATGGTAAGATTGTGGATTGTGGTTTTAGACTTTCAGTTTCATACTATGG AGTAATTTTTGAGTGTTAGGATATCCTATGACAGTGAAATAATTCTTTGAAAATCCTGGGGTATCAATTTTATTAATTAT GTTGGGTGCTGAAATAGAAACCTGTTTTATCTGCAATGATTTATACTCGCGGCTTAATATTGATCAACATTTTCACTGTT TTTTTGACTTTTTCCCCAATTGTTATTCTGGGCTCTGGCTTTAACGTTTGAACTTCGAATGTATGAGCTTCTTGGCTACT ATTGTGTACTTGGCCCAAATTGACAGCTGGGAATGTAATGAAAGATGTCGTTTTGTTGGTTTTTTTTAGAAGTCTCACAT TGACTCACTTGATTTTTAATAAGCTAGCTGATGTAGCTTCACCCTCATATGCACAGTCAACACCACTTTGATGCGCTTCC TATTTTGCATTTAGTGTGAATAAGTGGTTTCATCTTTCTCGATTGTTTATTCGCATTCCCCTCATTTTCACACTACATCT GAACAAAGCATACATTTAGGATCTGAGAATTTTATAGATTTCAATAGTGGAATACTACCAGGTACTGAAAAATGTTTAGT TTTATATATCTCAGATGTAATAAATTTCGTTCTCATGGCTCACTGTATAGAGATGCTTGTTCAGTTCAATTTTCCGTCCC TGGACTAAGTCTAAGGATGCTTTCAACAACAATGATCGGGGGATAGTTATCTCTCAAATATAAATATAAATAAGTATAAA CGATAGAGAAAGACAGTTCTGTTTGTATTGATTCTGTGTCTCGATGTTCTTTGATTTGCTTTAGATGGTGGCAGAGCTAG ATATAGTTTCTACCAAGCTTAATGTTCTGCAGTTCCATTGTGAGATTTCTGTGGCAGACAACTCTGCAAAATTTTGATTT TGATGTTACTAGCTGTGATTTAGGGGCAATGTCAACTATCTTTGGAAGACCAAAATGGTGTCACTTGAATTTTTAGATGA CTAAGATGGGTCATGGTTATATACTTAAATGTTTTTTTGTTTTGTTGTTATAAGAATTATTTTTAGGTTTCAGTTTTTGG ACCCATATAGGTTATTAAAGAGGATTAAATATGCTAACAGAAAACAGACCAAAATGAGTGGAAAAATAGAAGAAAGAACA AAAGACACTGAGACTAGCAAACTTAGCAAAATGAACCATCTCTGCACCAAAAACAAGTGGTTGAACACCATGAAGAGGGT ACGAGGATTCCATTAAAAAAATGTTTGCCCTTGGTTGAGATTTGGCAAGAAAAATTGAGTATCCTGGACTACATTCCCCG TCTAATCGACATAAGTGCATGCCTTGAAACTATAGAGTTTTTCAAGCTGCAATATGTTTTGGCGAGATTGGAAGAGCAAG CTCATGCGAATTCTTCTGTCAATTGATGCAAAATGTTTCAACTTTTATTAGGTTGTCTCTGCTTTCACTTGTCCTTGGCA GATATAAACTCACTCATGAACTGTAACCATGTGATTTCTACTTTTGATTGTTTTCTAATTTTCTGTCTGGTTCGTGATAA TTTAACTGGCATCTTCTTGCTATTTGATGGATCTGAGAAGTAATGGTATTCCATTTAGTGATTCCATACCTGCATATGCA TGTACTCACTCATGTCTAGTGATGATGAATGATGATAGTTTTGGAGAAAACTAATGCTGACGGAAGGTTGATGATAAAAT ATAGGAGCACACAAAATTTGGCCCAGCCCAATCTGAAAATATGTAACAGGATATGGGCTGTCCCGGGCCACTGGCCTGCA TAGTTATCAACTTTAACCATGTTAAAATAAATAGTAAAAATTGAATAAAGAAAATAAATAAAAATACTTGTTACTTGTTT ATATTTTCATATTTGTTTTCATAGATATATGATTTTTCTCCAAAGATTATATATCATTACACCTTAATGTTATCTCACTC TTTTTGTTTGTTAATAAAGTGTATTTTTTTCTAAATTGAGAAATGAATTCTTGTCAATAATTGTGGTTAAAAAATAATGA GCTCACACTTATATTGTTCCAACGCAACTCAATCAGAAATGATGTTTGCACCGGGCTAGGTTGACCCAAATTGGCACATC TAGCAATTTGTCATATTTCTCCACGATTGAGCAAAAGTTGAGCCCACAACCTGGATGGACCTTTTTTTTTTTTGATAATT TGGAGGGTCAAAGGCCCAAAAAACAACAGACTACACTACTCTTGGAACAGTGTTTCCAATAGCATCAGAACGAAGAAGGG GGAGCAATCCAGAGGGGATTTGTCCACTATCAAAACTCGCTTCTCCTACTACATGCCTAATCTGTGCTAGGAAATCAAGA CAATTGTTGGCTTCACGATAGATAAGGTGGAAAGAGATATGCCAGCTTGGAGAGAATACGGAAGCAATGTCCCTAACTAT ATCCGCACACGAATGATTTGCAGGGCAAGTGTCTGTGAGGAGAGCAAAAGCAGCTTTAGAGTCAAGTTCTATTTCTAGTC TCCTTGGTCTCTGGTTGTCCACCATACGGAGGCCTAAAAGGACACCCCACAATTCAGCACGGAGAGGATCACAAAAGTCT AATATGTGAGTGAAGCCTCTAATGATTCTTCCACGCGAGTCCCTCAACAGCCCTCCACAAGCAGCTTTCTTAGACCTCAG TAAGCTGGACCCATCAACATTCAATTTGCAGACGCCTTCCTGTGGCATTTTCCAGGAGATATGAACCTCCTTCCTATGCA AGTCATCAATTTTCTTAGGGGACAACAGGGTCTTTGTAACTTCAGCTGCATAGCGGGTAGCATTGATGATGAAGCAATAA TACCAAACAGTAAGGGCCACTTGATACCATCCACGTGTCTCTCTTTCCTCTGAAGATTATAAACAAGCCAGTCAGACATC CCCAAACTGAAAAATTTAGTCCATTCCCTTGGTGAAATTAAGGGATTCCAGACTTCCTGAATATGACTGCAATCTCTTAT CACATGCATTACTGTTTCTTCAGCATTAAGGCATCTTGGACTAAGGGCATCAACAGTCATTTTCCTTCGAACCCGCTCCA TATTCGTGAGGAGTCTATCATGGGAAACCTGCCAAAGAAAGCTTTGGACCCTAGGAGGGCCCTTGTATTTCAACACCAGG TCAAAAGCCTTTGCAGTGTACATATCAGGATAATTAAAAATCAAAGAGTAGAAAGATTTAATGCTAAAATACCTATTAGA GGAGGGGCTCCATATGGGAATATCATCCCCATGTTTATCATCTCGAGGGCGGCGGATTTTGGCAACTTTATCACAGATAT CATGAGGGAGTAGCTGTTTCAAATTGTCCCAATCCCAATACCCTTCCTTAGCATAGAAGGAGACAGGAAGGTTTTCAACC CATGAGTGGCTGTCTTCAGGGATATATTCAAATAAATTCTAAACAAAAGAGAGTAGATCGACCATTTCCAATATTCCAGG TTGCCCCTTTAACTACCAGAGGCCACACACTACATATTCCCTTCCAAGAAGGGGAATCTGTGGGTTTGGGAAAAGGGGAC AACCTCACAGCAGGGCTAAATTTATATTTAGCTTTGAACACTTTGACCCAAATGCAATCTTCATTTCTGAAGATTTTCCA AGCAAGTTTGGTCAAGTAAGCTCTGTTTAATTGTGTGCAGGTCCATGAATCACAGACCTCCATGTTGCTTTGGAGAGCAA ATGGTCTCCCAACTAACTAGATGACATTTCCTACTTTCCACTGTTGTACCCCATATGAAGTTCCTGCAAAGCTTTTCAAT CTCCTTGCAGATCCCCATAGGGATTGGGGTGGTTTGCATCACATAAGTGGGTAAGCTAAAGAGACATGATTGAGTTAGTG ATACTCTACCTGCAAATGAAAGAGTTTTCACTTTCCAGCTATATAACTTCTTCTCCACTTTATCAATGGGAAACTGGAAG TTCTCTTTGGTCATGCGAGAGTGCTTCTTATCTCACAAAAGTTGGATACTCATTACACAACCACTATTTACCATTGATAT AATACTAAAGTATGGGATGAATGCGATTGAATAAATGAAGTGACTAAAACACCATTCTCTATTGTTAATGCGTTCTCCCG CTCTCACTCGTAGCCCACCATAAATCCCTTATGTTCGTTCCTATTATGTCTTGACTTAACACCTACCCTCCTCATGTAAT TGTTTTTCGGCCTTGTCTAGACCTTCACCCTCCCCCACTCAACAACTTTTCACTCCCTCCTCTTCCCCTATCTCCCTCTT CATCTCTTCCCTCTGTGTTAACTCGTCAACTCCCCCACATACCTCTTTCCACTGTTTGAATCCCAAAAACCACCACATAC GTTGTCACATTTGCTACTTTTTCCACTAAGTCGTCGCCCAAGCGCCCATGTCGTTGTCGTAGCCGCCCACTAAACCCAAA ATTGCAACACCCACGATTATCATGAACACCACCTACACTAGAAACCAGAGATAGACCCAGGTTAAAAACAAATGGGGTTG AGCCTACAAGAGAATTTTTTCCTTAAAATAATGATATTCAAATGTTAATATTACCCGATATCATAACCACCTTCTTGTAA GACCCAAGAATTTAGAATTAAATAAATAATTAATTTCCAACTCACGCATATGATTATGTGTAAGCGTGAGAGGAACTTGA CTGTGTTTAATGTTTGGATTAGCGTTATGAAGAAGAAAATTTAGGAAACGACATAGAATATTACTAAATTCGCTATAGGT TATAGCACGACTTTCATTCACTTTCGCCTTAGGGCGAAAACGTTAGTAAATGGCTAATTTGCTCTTAAAGCACTGTAGAA ACGATATTCAAAAATATTCAGAGGAATATAAGAACTTCTCTTATTCCATTCCACGACGAGTGTTTCGACAAGAAACCCTG GACTGTACGAACGATCGATTTCGATTCTCGGAAGTTTGCCGAAACCGAGTTCCTGTTAGCTCAAGAACCTTAAAGTAAAC TGTTGATGAAGACTTTTTCTATTCGGAGCTTCAAAACGAAGATTCCACACGCGTTCACCCATTTCTTTCGATGTTTCTAA TCTTTCTTCAGAAAGAAGTTTTCTCATCCGACATCAACTGCAAAAAGTAGTTTTTCGGGTAAAATAGATTTACACCGACT TTGGATCGTTTGCTTTAATTCTGAGAAACCTGTTTTGAGTTCTGGAATTCTGTCGCCAGAACCTAACTTAGAATTCACGG AGGAATGTGCAGGAAAAATCGGAATCGCGAAATATTCTTTTCCCCACGTTTTCCATTTTCTATAAATAGCTTGAAAAATG AAAAAAAAAAAAAAACAAAAACATCACCACCAACACACACACACGGCCGTGAGCTTCAAGGAGGAAGGAGGAGAAAAATA TTTTCACCGATTCTTGTCTGATCGTCGCTCTGTTCGTTGCTACGCGTAGGCCTCGAGGTACTAATGTTTTTCCTTACCTC TGATTGTAAATTCTGTCGCTTTTCTCTATGTCTTTCTGTGCTCAAAGTTTTGAGCTTTTTGTAAAACTGTCCAAATAACT TGATTTCTCTGTCTAAACTTATTCCCTGCATGCCCAAGAGCATGTTTAGCGGATTACATTTCGCCGAATCTCGTCGAATC GCCGCAGAACTTCAATTCTGCTCAAAATACCCATTTTATGCTGAGGTTCCACTTTTTGAGTCAAAAACTCTCGACTGAGC TTAGCGTCAGTAGGATTAGTCGTCATAATCGTCGTTGGTATCGACCTCATCCAATTTATTTTTCGAAATTCTGATTTTGA GTTTCCGAGCTAAAAATCTTGACCAAAATACCACTGTTCTAGTTTTCGATCTGATAATTTTTCTGAGAGTTTCCCTGGTC TAGATATCGCCTAAGAATACCTAGGAATTAAATTAGATCGAAGAAAAAGTTCGGAAACCTTATTTTTGAGAGTGGCCGAA ACTTGTTTGTTAGGGTACCGTGTCCAAAAATAATTTTTGGGTCTCTATGACCTGAGCCATTGCGTAGCTCTTTCAATTGT CGAAATTTTGGCGTTGGTTTCGTGTCATTCCGAGTTATGTAGCTCGAGTTATGCTCGTTTTAGCGAACGAAGTCTTCGTT GTCCATTCGTGCCTAAATAGGAACTCTGAAGCTTTAAAAGCGTTCTTTACGATTTCGATTAGTATTATTACATCGTGTTG CTTCCAGTGAGGCTTGTGTTGATGATTGTGTTTCCTTGTTTTAGGTTCGCAACTTCCATGCACAACTTCTACTCACGAAG GTAAGGGTAACTCAGTTTTAGAGCGTCATTTGAGTCTTGCATGATTTATTCGCACTGCATGCGCTTGAGATGAAGATGTT TAATTTGATTGGCAATTGATTGAAATGTTGGTATGCTTGCAATGTTGTATGCTTGCTTATGTTGACTGTTTCTGAGGCTT GTGCCAAATGTTTTCTGGAGGCTTCGGCCGAGTGAACTTATTGAGACGTGTGTCTCCGTTTTCTGAGAGGCTTCGGCCGT TTACTGGTTTCTGTCATTGAACTGAGTTGGTATGCAATTGAATTGAGTTATGTTCGTTGATAATAGGAATAACATATGTT ACTCCGAATAAATCATTGGTTTGGGCATTGTTGTTGATTGACTTGGCATATAGGGCTTGGTCTTTAAGTGGCGATGAGGT GGGGTGTGGTCTCGCGTGATTGTCCCGTCCTTCGAGACGTTATAAAGTGGCGATGAGGTGGGGTGTGGTCCCGCGTGATT GTCCCATCTTGTGAGATGTTCTAAAGTGGCGATGAGGCGGGGTGTGGTCCCGCGTGATTGTCCCGTCTTGCGAGACGTTA TTGATCGATCCATTTTGGTAGCAACATATAGTTGCATTATAGGGAACTAACACCTGACCCTATGTTGTTGGATTTTAGTT ATTGGTTTATTGATATCTGATTTGATGTTACATTGTTGAGGTTATTATTATCTGAGTTAATCTATGTTAAGTTGTTGATA TATGAGTTTAGTTATGTTGCTAGTGTATTTACCATGATAGGTAATTAAATTTGAATAGCATGATTTTCTCTTTTATACAT GGTAATTGCATGGAGTTAACCCTTTCTATTTGCTACTTGTTATTTAGGCGCTTAACGCTATTAGGCGATGAAAAGCCTTC TGGCGATGCTTAGCCATGCTGGGATGGAGGAGGGATAGTAACCGGCGGAGCAAGGATGGAAGAAGCTGTATAGTTTCCTC TTAGTAGTTTATGCTTTGACTCTTCTTCGTTATCTGAAAACTCTGCTACTAAAACCTTGTTTTCGCCACTGTTTAAGTGT GCGTACTTATTTGGAAACTTGCTTATGCTATTGTAAGACACTATTATTATATGTCGGGAACGGGTTGTTTAATTAAGACC ATGTTATGTATTAAACTGTGTTTAGTTATTTTGAAAAGGAAAAAATTTATCGTGTTTTCTTAGGATTACGAAATAGTCCT TAGACTTTGTTAGGTGACTAATGTGACTCCTCAGTTGA
CDS sequence (LotjaGi2g1v0167900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTTTTTACTAAAACGACCCAACAATTTTCTTAATTCCAACTCTATCCTCACCTTCACCCTTCGCCGCCTCACCAC CCTCGCCGCGAAACCCTTCCCCGACCACCCTACCTCCGCCTACTACGACGAACTCGCCGTCGAAGCCGGAACCTCCGGCG ACCTCAACGCCCTCCGCGACATCCTCAACAAGCGCTTCCAAGACGGCTGCTTCAACACCAAGCACACCTTCAGCTTCATC ACCGCCACCAACCTCACCTCCACCCTCATCGACGACGTCGTTCGCACCCTCTCTGGCCTCAACCCTGGCTTCACGCGCAA GAGCGCGTTCGAATCCCTCGTCACGCGCCTATGCAAGCTCGAACGCGCCGACGACGCTCTCCAAGTGGTTGAATCCATGG CGGTTGAGGGAAGCTGCAGCCCCACCGCCTCCACGTTCAACCCTGTCCTCAGCCTCCTCACCAGGCAGAAATCGCTCGAC GAGGCGCGGCGCGTGGAGGAACGCATGGCTGGATTCGGCTTGCGGCTCGACTTGACGGCTCACAACATGTTCCTCATGTC GTACTGCTTCTCCGGCGACCTGGAGGCGGCGGCCGGAGTTTTGAAGAGGATTGAGAATGAGGGTTTGGCGGCGGACCCCC GCACGTTTGACGCGCTGGTACTCGGCGCGTGTAAGGCAGGGGTGGTGGATGGTGCTATTGCGGTGGTGAGGAGAATGGTG GAAGATGGAGTGCCCATGTTGTATTCCACCCACATGTGTGTGATCACGACGTTACTGCGGATGAATTGCTACAAGCAAGC TAGAAAGTATGCTAGGAGTTTTGGTGGGAAGGATACAACTTTGGATACACAGCTTTTAGGGTGTTTGGGTAGTAAGCTTA TGATGTTGAAGAAGGTTAAGGAGGCAATGTTAATTTTGGATGAAATGAACCAGAAGGGTTTGCCAATGGGTCAGAAATTG AAAGCATTTTATCTAAAGAATGCTGGAACTGTGAATGGTGTTAAAGGTAGGAACTAG
Protein sequence (LotjaGi2g1v0167900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFLLKRPNNFLNSNSILTFTLRRLTTLAAKPFPDHPTSAYYDELAVEAGTSGDLNALRDILNKRFQDGCFNTKHTFSFI TATNLTSTLIDDVVRTLSGLNPGFTRKSAFESLVTRLCKLERADDALQVVESMAVEGSCSPTASTFNPVLSLLTRQKSLD EARRVEERMAGFGLRLDLTAHNMFLMSYCFSGDLEAAAGVLKRIENEGLAADPRTFDALVLGACKAGVVDGAIAVVRRMV EDGVPMLYSTHMCVITTLLRMNCYKQARKYARSFGGKDTTLDTQLLGCLGSKLMMLKKVKEAMLILDEMNQKGLPMGQKL KAFYLKNAGTVNGVKGRN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 105 | 332 | 228 | 3.2E-26 | ||
| ProSiteProfiles | 106 | 140 | 35 | 7.487 | ||
| PANTHER | 108 | 207 | 100 | 3.3E-31 | – | |
| PANTHER | 108 | 207 | 100 | 3.3E-31 | – | |
| PANTHER | 109 | 312 | 204 | 3.3E-31 | – | |
| PANTHER | 109 | 312 | 204 | 3.3E-31 | – | |
| ProSiteProfiles | 142 | 176 | 35 | 8.681 | ||
| ProSiteProfiles | 177 | 211 | 35 | 8.44 | ||
| Pfam | 181 | 209 | 29 | 0.19 | ||
| ProSiteProfiles | 212 | 246 | 35 | 10.117 | ||
| Pfam | 215 | 244 | 30 | 0.038 | ||
| TIGRFAM | 215 | 244 | 30 | 0.0012 | ||
| ProSiteProfiles | 282 | 316 | 35 | 6.785 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0167900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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