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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0168600 |
| Transcript ID | LotjaGi2g1v0168600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | T-complex protein 1 subunit gamma; TAIR: AT5G26360.1 TCP-1/cpn60 chaperonin family protein; Swiss-Prot: sp|Q84WV1|TCPG_ARATH T-complex protein 1 subunit gamma; TrEMBL-Plants: tr|G7IPS8|G7IPS8_MEDTR T-complex protein 1 subunit gamma; Found in the gene: LotjaGi2g1v0168600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:58078867..58083209) extracted from Lotus japonicus Gifu genome v1.2.
TTGACTCATTATAATCCATGGACAGAGGACTCTTTGAAACGTGAGTCTGGAGCAAAGGTGCACCATGCTAATATTCAGGC GTCTAAGGTAAAAACGCCTATTTATTGATTACCAACTTAGGAGTACATGCTAATGTTTGTTAATATTCATTCGGTGTTTG TAATCTTAATATGGATAATGACTTCCAGGCCGTTGCTGACATAATCCGTACCACATTGGGACCCAGGTCCATGCTGAAAA TGCTTCTTGATGCTTCGGGAGGTTAGTGTTTTCCTGTCTCAAAAGTCAAAACAAGTTAGCCCTTGCAATAGTAACATGCT GAGAGAGCAATTATTTCCTGATTTCCATACAGTGTCGTGGGTAATTGTGAGCTGAAATAATTGATGTCACTTATAATAAA ATTGCTTTTGGAACTATTTATGTTTCTATGTTAACTTTAGTTCCTGGTTAGAAATTGCCAATTTATTAGCTTTTAGCATA CCCGGTTTATTAGATCCTTGCTTGTGTTCTCAAGTATTTATCTTATGCCATATTACTTTTTCTTTTAAATTAACAGGAAT CGTAGTGACTAATGATGGGAATGCTATCTTACGTGAATTAGATGTTGCTCATCCGGCTGCAAAGGTACTTGTCTCTCTTG CTTCATTCAGTTGATATTGCTTGTGTACATGTATGGTTCTAAACACTGCTTTCCTAACAGCAACTTGTAAAAGCTCCATT TTCTGATTTCCATTGAATATTTGTGGTTTAGTTTCCCTTTGTTTTGAAACTTTCTAATACTGATCTCTTATTGGGATGGC CACAGTCTATGATTGAATTAAGTCGTACTCAAGATGAAGAAGTAGGAGATGGAACAACATCGGTCATCATTCTTGGTATG TTTTTAGTGTGTGTATATATTAATTTTATTTATTTACTTTTTCATGTGCTAGCAAGTTCTAGAGTTAGTTGCGTTCTAGG AAGCATGGACACTTTGTAGCTGTGCTGTGTTGCACATGTATTTATCTCAGCCACTCCTAGTTATAATTTATAGCTTGTTT TCACATTTATACCAGTACATATGGAAATATCTTGAAAAATTAGATACAACATTGGCATTATATTATGCCTAACACCTCAT TCTGACCTTCAAAATACTTTAATGTTCATCCTTATTATTAGTTTTTCCTAACTGTGTTATATTGTAGTCATGTCAGTATC ACGGTCTATAAACTTGAAAACGTGCCAGTGTCCCTGTATCAATCCCGTGTTATAGCTGTGTGTCCCAAGTCATATTTCTG CTTTTGAGGTTGAATTGTTTACTGAATGGAAGATCAGATGTTTACTTGATATATTGGGATTTCCTTTCTCCCAATTTCAA TATCTTGTATTTTTTGTGCAGCTGGTGAGATGCTCCATGTTGCTGAAGCATTCATTGACAAAAATTATCATCCCACAGTT ATTTGCCGAGGTAATTCAATAGTATTAGTCAGTGATTCTCTTTTAAAAGGGTATACTGTATATTATGCCTAATACAATTA TGTATAATCTGTAGCATATAACAAAGCTTTGGAGGATGCTATTGCTGTTATTGACAAAATTGCAATGCCAATTGATGCTC AAGATCGTAAGTTCTATTTCTTTGACTGGTTCCTTTTAGATTACTATTATCTTCCTCCTAACAATATACAAAAGTTCATA GTGAACTGAACTCATTCAGTCATTTATTCCCGTTTCCATTGGTTTGTTGAGGGATCCTGGGTAGGTTGTCTATATAGTTC CACATTGGAATTGAGTTGCGGCAAAATCTCCTAGTATTTTATAGTAATTGAGTCATGTGTAGAAACAACACATTACCGAT CCAGTAAACTTCTTGACATGTTATTTTAATGCTATTGGTAAATTGAACTGCAGGGGCTACAATGCTGGGGCTAGTAAAAA GCTGCATAGGCACCAAATTCACTGGTCAATTTGGGGATTTGATTGCTGTGAGTATATTTCTCAGCTTGATTTCCCAATTG ATATCGTTTTATGTTTTCAAATATTTGAACTGGATGTTTAATTTGGCAATGTTTATTATCAAATTCTTCAATAAAAACTT TCAATATTTCGGATGGGAGTGTGGCTGTTGTCATCTGTGAAGTGCTTTTAAACCAGAAATTATATTTCTACAAAAGCATG AGTCTACAAAACATGAGTTTATAATGTACATGTTCACATGTTATGGTTTTTATTTCAACAAAAAGTATGAGTTGATGGTA TTTTAATTAATCCAATGTACAAATTTATTGTTCATGTTGTGACTATTGGCATCTAGACAAGCATGCTCACATTATCTTCA TTTAATTAGATGGGCCTCTGTTGTTAAGTAGACAATACATCTATAAATTCATCGCCCTAATATAGTTTCTTCCACTACCA AGTACACACATCATTTCAGATTTTGTTCTCCAGTTTTGTTCATTTCTTTTTGATGAATTGATAGCTCTAAAATAGTTTCT TGATTTCTTTCGCTATGAAATTCACTCATTATTTCAGCTCTTGTTCTTCTTCAGTTCTGTTCATTTCTATTTGAGTGAAC AGATTAATCCCTAATGCTACTGCCTGTACTGATAATAATGACCTTTTTGCAATTATGTAGCATATTTAGATTTGTTTAAT GATGTATAATATGTCCTTCCTTGGTTAATTTTCCAGGATTTAGCTATTGATGCTACTACAACTGTAGGCGTTGATATTGG CCAAGGTTTGAGAGATGTGGATATTAAAAATTATATTAAGGTTGAGAAGGTACCTGGTGGGCAGCTGGAGGATTCAAGAG TTCTTAAGGGAGTTATGTTTAACAAAGATGTAGTTGCCCCTGGCAAAATGAGGAGAAAGATCGTTAACCCACGTATCATT CTCCTTGATTCTCCTCTTGAGTATAAAAAGGGTGAAAACCAAACAAATGCTGAACTGCTTAAAGAAGAAGATTGGAGTGT CTTATTGAAGATGGAGGAAGAATACATGGAGGAGCTCTGCATGCAGATATTGAAGTTCAAACCGGACTTAGTAATTACAG AGAAGGGCCTTAGTGATTTGGCATGCCATTATTTCAGCAAGCATGGAGTTACTGCAATCAGGAGATTGAGGAAAACTGAT AATAATAGAATTGCCAAGGCATGTGGTGCTGTTATTGTGAACAGACCAGATGAATTGCAGGAGTCTGATGTTGGTACTGG TGCAGGGTTATTTGAAGTTAAGAAAATTGGAGATGAATTCTTTGCATTCATTGTTGATTGCAAAGACCCCAAAGCTTGTA CTGTACTATTAAGGGGTGCTAGTAAGGATCTCTTAAACGAGGTTGAAAGAAACCTACAGGTATGTTGTTGATATTGATAT ATATACTAAAAGACCAATCAGATTTTGTTCAAACAGTTTTCTGAACCTTGTTCCCATACCAGGATGCTATGTCTGTTGCA AGGAACATAATCAAAAATCCAAAGCTTCTTCCTGGAGGTGGTGCTACTGAGTTTACTGTGTCAGCTACTTTGAAACAGAA GAGTTCATCTATTGAAGGGATAGAGAAGGTGAGTCTATTACCACTACTTTTTTTGTTTTAGTGTTCACTATTGTTTCAAT GAACCACTTGCTACTACATATTAAGTAGGTTCAGTTCAATCTCTTGTGTAGTGCAGTTGTTTATATTTGTTCTCACTCAA TATTCTTGTTGACTGACAGTGGCCGTATGAAGCTGCTGCAATTGCTTTTGAAGCTATTCCACGAACTTTAGCACAAAATT GTGGAGTAAATGTCATCCGGACTATGACTGCACTACAAGGAAAAGTGAGAATAGTTTGCCAGGTTTTATTGTATATGACT GTTCTTTTTGAAGTCTGATCTTGCTTAACAAAATATTCCTGAAAATTGTAGCATGCAAATGGAGAAAATGCTTGGATTGG CATAGATGGAAATACTGGTGCCATTGCTGACATGAAAGAGCGCAAGGTACTTTATTTTATTTTAGTAAGAACAGTTATGT ATTTTTATTCCATTTTGCCCAGTTCTGTTCCCCCCACCCCCTGGAAAATGTAAATTTTTAATCTTGTCTTGATTTATTAC TGTACGCATTCTCAGTTGTATGAGCATGTATTTCTGCAATTGAGCTCTGATTATGTTTTGTTATAATATGGTGTTAGATC TGGGATGCCTATAATGTTAAGGCACAAACGTTTAAGACCGCCATTGAAGCTGCTTGCATGCTTTTGAGGATTGATGATAT CGTGAGTGGGATCAAGAAGAAACAGGCCCCTGGAGCAGGTCCCTCAAAGCCCAAGGTTGAGACTGAGGCAGATGCTGACG GCGAGCAAATCCTTCCCGACTAA
CDS sequence (LotjaGi2g1v0168600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAATGACTTCCAGGCCGTTGCTGACATAATCCGTACCACATTGGGACCCAGGTCCATGCTGAAAATGCTTCTTGA TGCTTCGGGAGGAATCGTAGTGACTAATGATGGGAATGCTATCTTACGTGAATTAGATGTTGCTCATCCGGCTGCAAAGT CTATGATTGAATTAAGTCGTACTCAAGATGAAGAAGTAGGAGATGGAACAACATCGGTCATCATTCTTGCTGGTGAGATG CTCCATGTTGCTGAAGCATTCATTGACAAAAATTATCATCCCACAGTTATTTGCCGAGCATATAACAAAGCTTTGGAGGA TGCTATTGCTGTTATTGACAAAATTGCAATGCCAATTGATGCTCAAGATCGGGCTACAATGCTGGGGCTAGTAAAAAGCT GCATAGGCACCAAATTCACTGGTCAATTTGGGGATTTGATTGCTGATTTAGCTATTGATGCTACTACAACTGTAGGCGTT GATATTGGCCAAGGTTTGAGAGATGTGGATATTAAAAATTATATTAAGGTTGAGAAGGTACCTGGTGGGCAGCTGGAGGA TTCAAGAGTTCTTAAGGGAGTTATGTTTAACAAAGATGTAGTTGCCCCTGGCAAAATGAGGAGAAAGATCGTTAACCCAC GTATCATTCTCCTTGATTCTCCTCTTGAGTATAAAAAGGGTGAAAACCAAACAAATGCTGAACTGCTTAAAGAAGAAGAT TGGAGTGTCTTATTGAAGATGGAGGAAGAATACATGGAGGAGCTCTGCATGCAGATATTGAAGTTCAAACCGGACTTAGT AATTACAGAGAAGGGCCTTAGTGATTTGGCATGCCATTATTTCAGCAAGCATGGAGTTACTGCAATCAGGAGATTGAGGA AAACTGATAATAATAGAATTGCCAAGGCATGTGGTGCTGTTATTGTGAACAGACCAGATGAATTGCAGGAGTCTGATGTT GGTACTGGTGCAGGGTTATTTGAAGTTAAGAAAATTGGAGATGAATTCTTTGCATTCATTGTTGATTGCAAAGACCCCAA AGCTTGTACTGTACTATTAAGGGGTGCTAGTAAGGATCTCTTAAACGAGGTTGAAAGAAACCTACAGGATGCTATGTCTG TTGCAAGGAACATAATCAAAAATCCAAAGCTTCTTCCTGGAGGTGGTGCTACTGAGTTTACTGTGTCAGCTACTTTGAAA CAGAAGAGTTCATCTATTGAAGGGATAGAGAAGTGGCCGTATGAAGCTGCTGCAATTGCTTTTGAAGCTATTCCACGAAC TTTAGCACAAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCACTACAAGGAAAACATGCAAATGGAGAAAATGCTT GGATTGGCATAGATGGAAATACTGGTGCCATTGCTGACATGAAAGAGCGCAAGATCTGGGATGCCTATAATGTTAAGGCA CAAACGTTTAAGACCGCCATTGAAGCTGCTTGCATGCTTTTGAGGATTGATGATATCGTGAGTGGGATCAAGAAGAAACA GGCCCCTGGAGCAGGTCCCTCAAAGCCCAAGGTTGAGACTGAGGCAGATGCTGACGGCGAGCAAATCCTTCCCGACTAA
Protein sequence (LotjaGi2g1v0168600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDNDFQAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEM LHVAEAFIDKNYHPTVICRAYNKALEDAIAVIDKIAMPIDAQDRATMLGLVKSCIGTKFTGQFGDLIADLAIDATTTVGV DIGQGLRDVDIKNYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELLKEED WSVLLKMEEEYMEELCMQILKFKPDLVITEKGLSDLACHYFSKHGVTAIRRLRKTDNNRIAKACGAVIVNRPDELQESDV GTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLLPGGGATEFTVSATLK QKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAIADMKERKIWDAYNVKA QTFKTAIEAACMLLRIDDIVSGIKKKQAPGAGPSKPKVETEADADGEQILPD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 518 | 513 | 1.2E-292 | – | |
| Gene3D | 6 | 500 | 495 | 4.3E-178 | ||
| SUPERFAMILY | 6 | 502 | 497 | 2.22E-81 | ||
| TIGRFAM | 6 | 506 | 501 | 5.9E-268 | ||
| PANTHER | 6 | 518 | 513 | 1.2E-292 | – | |
| CDD | 7 | 502 | 496 | 0.0 | ||
| Pfam | 8 | 501 | 494 | 3.7E-161 | ||
| PRINTS | 10 | 26 | 17 | 2.8E-28 | ||
| ProSitePatterns | 13 | 25 | 13 | - | ||
| PRINTS | 32 | 50 | 19 | 2.8E-28 | ||
| ProSitePatterns | 34 | 50 | 17 | - | ||
| PRINTS | 62 | 81 | 20 | 2.8E-28 | ||
| ProSitePatterns | 62 | 70 | 9 | - | ||
| SUPERFAMILY | 119 | 381 | 263 | 2.08E-24 | ||
| Gene3D | 120 | 382 | 263 | 4.3E-178 | ||
| SUPERFAMILY | 187 | 355 | 169 | 1.41E-46 | ||
| Gene3D | 191 | 347 | 157 | 4.3E-178 | ||
| PRINTS | 350 | 372 | 23 | 2.8E-28 | ||
| Coils | 361 | 381 | 21 | - | – | |
| PRINTS | 384 | 396 | 13 | 2.8E-28 | ||
| MobiDBLite | 505 | 532 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
| Molecular function | Unfolded protein binding | Interacting selectively and non-covalently with an unfolded protein. |
Expression pattern of LotjaGi2g1v0168600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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