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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0169000 |
| Transcript ID | LotjaGi2g1v0169000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | plant/protein (Protein of unknown function, DUF599); TAIR: AT4G31330.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|Q9HH76|UPPS_SULAC Tritrans,polycis-undecaprenyl-diphosphate synthase (GGDP specific); TrEMBL-Plants: tr|I1NIF3|I1NIF3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0169000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:58197617..58201185) extracted from Lotus japonicus Gifu genome v1.2.
AATGATTCCCGAATTGGCCATTGAGCACAAGTGTCCAAATTTAGGGCAAGAATCTTCAATTTTCTTGCTTCGTTTCATCT ATAAGCCGCCCAACCTATTTTCTCTTCATATATATATAGACCACACTCATACATACAGCTAACGTAGAAGTTGTGGCAAG AGTAATTGCCGTGAGAAGGAGATTAAGGAAAATTGAAACACGTACCTGAAAGAGAGAGGTTTAATTTATATGAATGGAGT GGAGAAGCTATTATATGGATATTGTGTTTGTACCATTAGGGTTAGTGATCATCTTAACTTATCATGTCTTGTTATGGCAT AGGATCCGTACACAGCCCTTGGCAACAGTCTTTGGAATAGACGCTGATGGTCGGCGATTGTGGGTTCCAGCCATGATGAT GGTATGCTCTAACTTTAATTAATATTTCAATTTCTTGAGTACTCATCGGAGAATTGAAACTAAATATAGAACAATGAGCC TAAATGCATGGTGTATTGCGTATTAAGTTATTCTCCCAAGATTTTTCGAGTTTCCAATTAACTTTATTGTGCTTTGAGTG ACATGCTATAGTTATTATATTTCATGCATGGAGTAGTGTTAAACATATCCTAGGAGAAATCTTATATTTTATATTAAGAT GTTGTACATACCACTAAAATAGCAAAGTGATCGGTTGAAACCAACCAATCACCCTTGTTACGGGTGTTTTGATCTTCGGG AATAACGGTCAGGGTGGTGGTGCTCCATGCTTCAGAGTTTATTTGTCGCCGTGAGGATAATTTGGTGGTTGAACCTTCAA GAACACTTTAACGTTTAAGTAAGGATGTGGAGAAGTGCAAGGAAGATGATGTGTAAGGATTCATACCTTCTAAGCTTACC TTCGCCTTTAATTTACAGATCGAGTTTGAGATATTCAAGGTAAGATTATTGTCATTTCAAGTCTGAGGTTCACGATAGTC TCAAGGTGTCGTTTGATCGGAAGTACATGGGTCGTTGATCAATCGGTGTGTAGGAGGCTGGCATTCTGCTTCGGTTCCTT GAGTATTGCGATAGTTTCTAGGTTAGAGATCTGTTGACCTTGGCAGTCTCACATTGGGGTAGGGTATAGTAGGAGGTGGA ATGACACCAAACGTGCTAAGTTACTTCACGCATGTTGCAGATCGATGGTCGATGATGATTTTGAGGACGACCAGCTAACC GAGAGAAGATAAGGAATAAATGTGTTTGGTCAGCCATGGTCGACGAGCAACATGTGGTCAGTATACTAAAACATTTTTTG CTTTTAGCAACAGTTCAAAAGTGTAGCCATAGACGTGAAAAATGTTTCCTAAACTTTAAGCAATAGTTTTCGATAGTCTC ATGTTCTGGCGTTACCTATTCTATTTGGTAACAATTTCATGTACTTTATAGTAGGCATGTGAGAAAATATAACATATTGT GTGGAAAAGAGAACAATTATCACGTAATAATTATTCCCTATTATTAGATAGGGAACACTTTTTAGTGTTGTAAATAACAC ACGTTGCCTAAAATGAGCTCTCTATGGCAACAACCACGAGCTGATTCCAAATGCATTTTTAGACAACATTTGTGCGTGTT GCTTAAATCAGTATTACAAAAAGCAAAAAAATATTGTAGTTATAGTTGGTGGATGATCATGTGCCTAAATATGTATGTTT CATCGGTCATGGACAGAGCATGTGACATTTTTTTTATAGGCAAATGTTAGTTGTTAGTTATGTTAGTAAATTAATTTCTC TTTAGGTTCGAACCCTGGACCCTTCACCCTTCATTCCTCCAACCCTTATTTCCCATAGCTCTTATCACTTGAGCTACATG TGATCGGTATGGGTCAATGAAGACCATGTCCCGAATACATGTGTTTGGTCAATTATGGCGAGTAGTCAACATGTGGTTGA TATGGTCGATCAACTTGAAACTCTAAGGATCAAGTTCCTTGTCGAGCAAGTTTGAAAATTTTGGACTTTGTTTTTCTAAT TTGGAAGCAAAAGTCAAAATTTCATTTAATTTAACTAAATGTACAAGAGAACACCTCTCTCAAATAGTTAGTACATTTTG AACACCTAGTTTTAAAGAATCATCCTGAGAAAATATCATAAGAAGAGACAACAAGGGACATTACAATTTTTTGTTTTTTA AATAAAAAAAGAGAAAAGTATGTTTGATAGAAGTTATTTTTAAAATCAGATATTAAAAGTAGTTTTATTTATTTTTTAAA AGTACAAGTCCAAAACATTTTAGTTATTTTCTCTTTTTGTTTCTAGTTTCATTGGTTGTTTTTTTTTTGGTCTTCTTAGT TTTTTTACTAATCCAGTTCATCAATTTTTAAAATTAAATAAATTTGACCATTCTCTTGATTTTTAAATGCATAAAATAAT TAAATCTCATCCCCTTTGTATTTTTTGAGTGTCTCATTCTTGAATATATATATATATATATATATATAATTTTTTTTTTT GACAAAAAATATCTATATATATATATATATTTCCTTTTGCTTTCTAAAAAAAATAATAATTAAATCTTCATTTTCTTTTC AAATATTTTAAGGTTTATTAAAAGTAAGAAAATGGTGATCGAATTTTGATAAACAATTTTTTTCTTGGTACATAATGAAA TTGCAGGATATTGACAAGAAGGGCATAGTAGCTGTCCAAGCAATTCGAAACATGATATTGAGTTCATCCCTTATGGTCAC ATCCTCCATTATCCTCAGTGCAGGCTTGGGAGCAGTCATAAGCGGCGCTTACAATGTTAAGAAACCCATCAATGACCTGC TTTTTGGAGCTGGTGGTGAATTCATGGTGGCACTCAAATATGCCACACTCCTTGCCATTTTCATATTCTCATTTCTATGC CACTCTCAGTCTATCAGGTTTCTCAACCAAGTGAATATCCTCATTTGCATTCCACAAGAGATGATGAACTTGGTAACCCC AGATTATTTGACTGAGCTATTGGAAAAAGCTACTATTTTGAACATTGTGGGTAACAGGCTTTTTTATGCTGGGCTTTCCC TTCTCCTTTGGATATTTGGGCCTATGCTAGCTCTTATGTGTTTAGTGGCAATGGTGCCTGTACTCTACAGTCTGGACTAT GTGGCTGGGAATGGAAAGACAAACTAATGTGGTGGTTTGATATAAAAATAACATTGAAGACTACGCTAATATCGTTATGG AAACTTTTAACTTTAACATGCTAACGTTTTTTAGCTAGTTCATTATAATTTCTATACTCTTTTTGGTCAACAATACTTGG CTTAACATTTCACGGGCCAAAAAGGCCCAGCAAATTGCAAAATGGAGGCAAAGCAATACAGCGTGCAATCTAAATTAGAT GCGCATAACGTAATTTCTCTGGAACAACCTAAAGACATAAAAAGAGCATCTCCATCCCTAGCATATTAGCTTTAGGTTAG CACTATTTACGTGGATCCAAACTCCCGCATAGATTCTAAGTAACTCATAAGCAATTGATGCAGATTTTGTTCTAATCACG AATTCTTAACTTTGAGTTCTTAGCATTATTTCTATGGTCACACAACACC
CDS sequence (LotjaGi2g1v0169000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTGGAGAAGCTATTATATGGATATTGTGTTTGTACCATTAGGGTTAGTGATCATCTTAACTTATCATGTCTTGTT ATGGCATAGGATCCGTACACAGCCCTTGGCAACAGTCTTTGGAATAGACGCTGATGGTCGGCGATTGTGGGTTCCAGCCA TGATGATGGATATTGACAAGAAGGGCATAGTAGCTGTCCAAGCAATTCGAAACATGATATTGAGTTCATCCCTTATGGTC ACATCCTCCATTATCCTCAGTGCAGGCTTGGGAGCAGTCATAAGCGGCGCTTACAATGTTAAGAAACCCATCAATGACCT GCTTTTTGGAGCTGGTGGTGAATTCATGGTGGCACTCAAATATGCCACACTCCTTGCCATTTTCATATTCTCATTTCTAT GCCACTCTCAGTCTATCAGGTTTCTCAACCAAGTGAATATCCTCATTTGCATTCCACAAGAGATGATGAACTTGGTAACC CCAGATTATTTGACTGAGCTATTGGAAAAAGCTACTATTTTGAACATTGTGGGTAACAGGCTTTTTTATGCTGGGCTTTC CCTTCTCCTTTGGATATTTGGGCCTATGCTAGCTCTTATGTGTTTAGTGGCAATGGTGCCTGTACTCTACAGTCTGGACT ATGTGGCTGGGAATGGAAAGACAAACTAA
Protein sequence (LotjaGi2g1v0169000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEWRSYYMDIVFVPLGLVIILTYHVLLWHRIRTQPLATVFGIDADGRRLWVPAMMMDIDKKGIVAVQAIRNMILSSSLMV TSSIILSAGLGAVISGAYNVKKPINDLLFGAGGEFMVALKYATLLAIFIFSFLCHSQSIRFLNQVNILICIPQEMMNLVT PDYLTELLEKATILNIVGNRLFYAGLSLLLWIFGPMLALMCLVAMVPVLYSLDYVAGNGKTN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 220 | 220 | 4.0E-106 | – | |
| PANTHER | 1 | 220 | 220 | 4.0E-106 | – | |
| Phobius | 6 | 26 | 21 | - | – | |
| TMHMM | 10 | 28 | 19 | - | – | |
| Pfam | 11 | 215 | 205 | 1.2E-66 | ||
| Phobius | 27 | 77 | 51 | - | – | |
| TMHMM | 73 | 95 | 23 | - | – | |
| Phobius | 78 | 98 | 21 | - | – | |
| Phobius | 99 | 117 | 19 | - | – | |
| TMHMM | 115 | 134 | 20 | - | – | |
| Phobius | 118 | 134 | 17 | - | – | |
| Phobius | 135 | 187 | 53 | - | – | |
| TMHMM | 188 | 210 | 23 | - | – | |
| Phobius | 188 | 210 | 23 | - | – | |
| Phobius | 211 | 222 | 12 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0169000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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