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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0174200 |
| Transcript ID | LotjaGi2g1v0174200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CDT1-like protein a, chloroplastic; TAIR: AT3G54710.1 CDT1-like protein B; Swiss-Prot: sp|Q9M1S9|CDT1B_ARATH CDT1-like protein b; TrEMBL-Plants: tr|A0A0B2QXX1|A0A0B2QXX1_GLYSO CDT1-like protein a, chloroplastic; Found in the gene: LotjaGi2g1v0174200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:59197189..59204089) extracted from Lotus japonicus Gifu genome v1.2.
TTAAGCATCATATTAGTCCCTGTCTTTGTGTCGTCGTCTGACCTAAGTCCCTCCCCGGAAAAATTATTGGAAAAGGTCCT CTTCTTTGTAAATTGTTTGGAGTAGGTCCTCGCCGGAGCCCGGAGCTCCGACGAGTGATGATTTGGCAAGTTGACTGTGT TAATAAGGCCTACGTGGAATTTAAAAATAAAATAAAAAATAACACATCAAAAATTTAAATTTAATTAACAAAAATACAAC AAATTAACAAAACTAACACTAAATTAATTCTTTCAAAAAAAGAAACACTAAATTAATTAATGTTTAACATATTTAACATC TCTCCCAGAAACAAACCTGGAAAAAAATTCAAAACATAGTTAACATCTTTTTGGGTTGATTTCAAAACAAATTTTTTTTT TGGAAAATCATCAAGCTGCTGCAAATCCAATCTACTTGATGCTTCATATTAGTTCACCGTAACATCAGGGAATTGATCAG ACAATAAAATTAGAGAGCAATTTTAAATTAACAATGGCCGATCATCAATTGATAAATTAAAGAATATTTCCTTCTCAAAA ATCACCACGCTGCTGCAAATCCATTCCAATTTACACATAAACAAACCCAATATCCAAACCCAACCCAGTAACCTCGTCCC TTCATCCATCACCTCCTTCATCCCTCATCCTTCATTTTCCAACCTCCTCCTCCTTCTTCATAAACAGGCCTAGAATCTTA CAAACCCAGAATAACACTCAATTACAAACCCAAAAAAACCTTCACAAACCCAGAAAAGAAGAAGCACTGCACTCCCACAG AATCAGACCTCAAGAGAAAGCAGGGGAAAAACACAAATACAAGCAAGTTACAACAGCCCCAACAAAAACAAAGCCCCACA CCGGCAGATTCTTCGAAAAATCTGATTGATGAGGAAGAAAGTTAGAAGCTTTTCATCTCTAAAGCTCAGATCCACGTCTG AAACACACTTGGGACCAAGAACCCTTCAAGTGCATCTTAGGTTTAGGGTTCGGGTCGTACCTCAAATCATCCCCAAACCC TCCACCCCTGTCGTTGCCACCCATTAACCGACTCTTGGCGACGAGGCCATCCTTCCTCTGGTGCGAATCGACCCTCTGGG GCTCCTCCTCGCGCTTGGTGGCGGCGACGAGTACGCTGTAGAAGTCGCGATCCTCTGGAGTCTTCGGGTTTGTTTAAGGG CTGGTCAAGGGAGATGGGAATGAAGGGGATGATGGGAGTTGGGGCGAAGGAAGGGCCTTCAGATGGAATCGGTGGAGGCC AGGGTGCCTTGGAGGTAGTGGAGGATGGGGTTCTGATTTCTGAAGAAGAGGAACGAACATGATGATGATTTCTTTTAGGG TTTTAAGTGTTTGATGGTGATTTAGGGTTTGGGTTAATTTGGGGGAATTGGAGTTATTTTTGGGGGAAATTGATTTTGTT AATTGATTAAGGTTAGATATGTTAATAGGTTTAATTTTGTTTAATTAATCTGACATGAAATTTATTTTTATTATTATTAT TTTTTTAAATCCATGTCAGCTTATTTGGCCCGGTCAGCAATCTAAATCATCACTCGCCGGAGCTCCGGGCTCCGGTGAGG ATCCGCTCCAAACAATTTCCAATCATGAGGACCATTTACAATAATTTTTCCGGCGAGGGACCTAGGTCAGACGGCGACAC AAAGACAGGGACTAATATGATGCTTAACCCTTCATTTTTTGGCGTAAAAAATACAAGTAGATATTTGAATCCACACACAC TTTCCCTCGCTAGTGCCAAGTTCAGCTAGGGTTTACATCAACCACTCAGGTAAACCACCACTCTTTCTCTCAATTCGTCG TTAACCTTCAAATTCCTCGACCCTGAGATCGTGTTTCGCAGCTTGTGTTCATTCACAGTTTTCAATTCCTTGCAGATTTT GCTTCTGCATCGTTGTTGTTGTTGCTTGAAAATGGATCCACAAACGTGTGAGCAATCCGCAAACGAATACGATTCTTCAG ATTTCAAGTCTGAGAAGATTCTCCAAGCTGTTGATAAACCAATCATGTGCCCCACTCCTGAGAAGAAGATCGAACCCTTA CCAGTCAAATCCAAGGATGAACAAACACAGCTTCCAGAAAAGTGCACGCTCTAAACAATTTTTTTTCATGCGAAAATTTT GCTTTTTGAAGTATTTTTTTGCAGGAAAATATAATTTATGTTTTTTTATTGGTTGCAGATACAGGACCATTGCTGATTTG TTTAGACATTTGAGTTGTTCACTTAGATTGCTGCATCTGCACAAAAAGCCTCAAACTTTTCAAAATATTTGCAAACAGGT CGAAGTTCTTGCGGAAAGGTGATTGTTTTGTTTGTTCTTAAAGTTCTTGTTCTTCAATTAAGAAAAAAGAATCAGCACTC TTGAAGCATGTGCTCCCTTCATTGAAATCATGACACACGGCAATGTATTATTGTCTGTTTTATTTTAAAAAGAATAATAA AGGAAATCTAGTTTAAAGCAGCGAATTTGTAGAGTACTGGAAATTTTCCCTGAAGTTAATTAATGGACATCATTCCGGTG AAGGTTCTGTTTTTATTGTATTATTTTTCCCTATTGAATTCAATTTTTTGAAGCTTTTGAGTTTTGATTGATTGGTTCAG TGACTGGTGTTTTATTTCCAGAAAATTCTCCTATGCTCATCTTGCACGGATGAAGTATATACTTCCTGAAGGCATACTCG TAGATAAGGTGCTTGTTCATGATAAGAAGAGCTTGTGTATGAAGCCAGATATTAAGATTACCTTGGTATTTGATGTTGTT GAAGAACACTGCGAACTGTCTGCTGATATGGCTCTTCGACGATATTTTAATTCTAGACTGATTGATTATTTCAAAATGCA CCCTGAGGTAAAATTTTCAATTTTGGGTTGATATCCTTGTTAATTGTTTGGAATTTTCTGTTTGAAACAGCAATTGTCAC TATCTTACCACTTAGCAGTTGTATGACTATGGAATCCTTTCTTCTTGATCTTTAGTTGTTATGTGGATTATTATTCAAGT GTGCAGATTCTTCAGTCCTAACTCCATTCTGAAGGAGTTTCGGAACTTGTGTGCCTGTGTCTGAGATATACATCTGAGTT CTGACTAGTTCAAACAGATGTCAATGTGATACTACCATTTTACTGTAATATAGTACGTCAATTGTGGAACTCGAGATTAC TTCTATAGTGCTATTTAGGTTATCTGCAAAGTACTATATGTTGTGAACTGTTGTTCCATCTAGTTGGTAGACATATCATG TGGTGGCATGTTTATCCATAGTTGTGAATGAATTGATGATGATAAGAAAGTAGCTATGAGATTTAAAAAAATGGGTTGAT GATAATTAGAAAGTAGCTATATGATACTCTGTGGTTAGGCTACCCTTGTATAACTTCTTTTCTTGGGTATGGCTCATCCA TTTCCTTTTATTTATTCAAGTTAGCCAGAGTAATTTTAATGTATGATTGATACAGAAGAGTTTATGATGACATTTTTTTT GGTGTGTGGATAAGGCTGCTGATATTCCAGAGGCCATACTACCAGAACCCTGTGGCCAAAGAAGTTGTCACTTGATTTCG GAGGATTTCCCTGTAATTTCTTCGACAGCACTTTCCTCAACTTCCAACCAAATTGAACAGTCCCCTGAGAAGTTCAATTT GTATCCATCTTTTACAAGACATTTTTCTCAGAAGATTGTTGCTGACCAGACAGAAAAGGTTCATGACCTTTCATCCACTA AAACTTGTCTGTCATCTGATGTGTCTGATTGTCCTGACATCCCAGAATGTGAAAGAAAAGGGCAGAAAGAATGTGCAGCA TTATCTGATCATTTGAATACAGAAAGAGGGCAGCAGAAGGAATCATTTTCAATATGTTATCAACCTAGTGTTACTAATAC ACCAGTTCGTATGTTTGGACATTCTGTTAGTCACGGAAATTCTGAAAGCCCTGAGGTGAAAATGGTCTCTTGCGTTGATA GTTTTGTGATAGAGACACCTGCACAATCAGCACCTGGGAGATTGTTGCCCGTTTCTGATGATAAGCTTCAAAACATGACT TACCCAAAGTCTACATCATGTTCTAAGACTGCAAAAAGAGTGCTTGACTTTTCAGGCATGGAAGGCAATGAAGGATTGGA CAATAGAGTAGACATCTCAGAATCTAGCAGCGCTACACATGAATTTCATGGCATCCCTCAACCAAGCATAAGTTTTTCTG AGGATTGCAATTCTTTTGATTCTGTTGCTCTGCCTCTGGAGGTAAGCCAATCTTAAACTGGCTTTGATTTTTGACTGATT CACCATGTCATACATTTGACATTTACTAATTATTCCATCTTGAAGCTTTCTTTTTGTCCTTAATTGAGAAACTGCAAACC AAACAAGTTTTTTCTAACATTGTAATAGTTCACATTAAATTATAACTAATTAGTGGGGCACACATCATATATTGATTATA TTCATTCTTGAAAAAGTGGGATAGTGGGGATGGTTAAGAGAAGATAATGAAGATAAGGAATGCGAAATGTATCAAAGATT GAAGTGAAAACTTGGATAGTTATATGAGGGTATTAATATTTTTTATTTATAAAGAACTTACAATTGTAGAACTTCGATGG ATTTATCAAATATGGTGTGTCAAATAGGGTTTTCACAGTGTTTACAAATGAAAAAGTTTGGAATTAAGAGTACAGATGAA AAACTACCCTTTTATTCATTTTTTTCTTTGTAATGGTGATGGTCTGCATTTTGGGAATGTACTTTCCTTCTCTTTCTAGA TTGACAACACAATGATTTACCAAGTACACCATTCATTTTACATTTTCCCCCATTCTCCTCCAGTTTGGTACTAGTCAAAT CTATTATTATTCTTGATTCAGTAGTATATGCTTGTGGTATGCATTTTTTATGACAATGTAGACTTATTTGAAGTTCTACC CGCGTTAATAACTGTTGGCACTTGGTATATCTTTGGGTATAGATTAATATCCCTTGTTCAATCGCCATACTTGATTGGCA ATGTGAACCCCCTTTATCAATTTATAGTATGTTCTCTATCTACTTGTCATGTCAAGATTTGATACTATCTGGTGGTCTTT ACTTGTGAAAGATTTCTTTTGAAAAGTCATGAGACTCATGAATGTGTTTTAAATTTATTTTTCTCACTTTAATAAAAAAA ATTATTTTTCTCACAATTGTGAAGTGATTAGTTTCTTGTAACTTGGTTTCTCAATGCAGGTAGAGGAGAGCCTTGGTTAC TCTTTTGAGAAAACTGACCAAAATCAAGGTGGTTTAGGGAATAAAAACATATCATCATTGGTGGATATGGTTAATGTGAT TGGATCTATATTTCAATCTGTTAAAAGAACTCCAATCACAAAAGAGGAGCTCCTGCAAAAGATAATTATGAACAGTTTGG ATTTTGATGAGATTGGTGTGCTCTAGTTCCGTTTTTCACTTTCAATATGGTTTCTTACTAATAAACTAAGCTAATTAATT TTTTCCTCCCTATAGGAGAAGTTGAAAAACAGATTGAGATTCTGGAAAAGTTGGTGCCGGACTGGATTTGCAAGAAGTTG GTTTCTTCTGGAGATGTTATGTACAGGTATGTCTCTGATTATTATTGATTAAATCTCTGTTTGTTTTCTCATCGTACCTG AATACTTAGCATGAAATCCAGCCTTCACATGTTCCCACAGACAATTCATATCATCTTGAGCCGTTACTGAGGATATCTAT TAACTACTTTTTTTTTTAGTGCATGAGGTTGTCTAATCTTTAGATTTGTTAATAGAGCAAATAATAGTTTGTTATGTTTC TGCATCAAGAACCAACAATAGCATCATCAAATACCATCTTCTTGTTGCATAAATGATTAGCCCAGACCTTTTTAATCCAT CTATTGCTGCCTAATATATACTGTAAGACATAATTATATACTTTGTAAAGACTGATTCCCTGTAATTTAATTTTCCACAA ATGGGTTAATGTTACGTTATGACCATACTTTATGTTTATGATGGTAAACAATGTAGAATGCATGTAGCATTTTTTATTTT TGTTTTTAAAAATCATTATATCTACTAATGTATGGTTCTTATTCTTTCATGATTAATGGAAGGCTATACTAGTCAAATTT TGACTAGTATAGCCTTCCATTAATCATGAAAGAAGTTAGAACAATGTTTTTGTGAGCCAAAATCCTGTAGCATTTACTTC AAAATAAGTTATTTCTTAATTTTTTTTTTTGAAATTCTTATAGTTTGTAAAACTTGATTTGCAGCATCAAGAAAGTGTCA GATTTGGACTCAGTTCGATCAAGGCTCTTCAGTAATGTGACCGTAGGAATTGAGTAAAAGGTTTTAGTCGATTGGCGATG AAAATAAATTATGGTGTTGCAAATATTTGTCGACTTATGCTATGTTCAATGTGCTAATTGTGGGGTTGAAATTTCCGTAC TCATCATTGTTTTGAGTCAGTTACAGCAACAGGCTGTGGTGAGTATGGGTGAGGTTTGGTTGGATTCAACAAAAAAGAAG TAAAAGAACAGGGTTTCAATACCAATCCAACTATTTTCTCCTTGAACTTTTTAACGCCCTGCAGTTACTTTCACTCGATT CAATCATGCTCTATGGTGAGGTTAAACTCTGAAGTGTGAGAAGTTCATGTTCTACATATTATTCATATTCCCTATATATT AGATTTGTTATCCGTGCATATTGGGAGTTTAGTGTTACCTCATCAAATGTGTTAATTATCTTAATGTACGGTAATTGTGT TAAAAAGTCATTTAAAAATGTAAAAAACAACTTGACAAGCTGCTTAACATGAAGAATGACATGTAACATTTGAAGGTAAA AATTGATAAGGTTTTTTTCCC
CDS sequence (LotjaGi2g1v0174200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCACAAACGTGTGAGCAATCCGCAAACGAATACGATTCTTCAGATTTCAAGTCTGAGAAGATTCTCCAAGCTGT TGATAAACCAATCATGTGCCCCACTCCTGAGAAGAAGATCGAACCCTTACCAGTCAAATCCAAGGATGAACAAACACAGC TTCCAGAAAAATACAGGACCATTGCTGATTTGTTTAGACATTTGAGTTGTTCACTTAGATTGCTGCATCTGCACAAAAAG CCTCAAACTTTTCAAAATATTTGCAAACAGGTCGAAGTTCTTGCGGAAAGAAAATTCTCCTATGCTCATCTTGCACGGAT GAAGTATATACTTCCTGAAGGCATACTCGTAGATAAGGTGCTTGTTCATGATAAGAAGAGCTTGTGTATGAAGCCAGATA TTAAGATTACCTTGGTATTTGATGTTGTTGAAGAACACTGCGAACTGTCTGCTGATATGGCTCTTCGACGATATTTTAAT TCTAGACTGATTGATTATTTCAAAATGCACCCTGAGGCTGCTGATATTCCAGAGGCCATACTACCAGAACCCTGTGGCCA AAGAAGTTGTCACTTGATTTCGGAGGATTTCCCTGTAATTTCTTCGACAGCACTTTCCTCAACTTCCAACCAAATTGAAC AGTCCCCTGAGAAGTTCAATTTGTATCCATCTTTTACAAGACATTTTTCTCAGAAGATTGTTGCTGACCAGACAGAAAAG GTTCATGACCTTTCATCCACTAAAACTTGTCTGTCATCTGATGTGTCTGATTGTCCTGACATCCCAGAATGTGAAAGAAA AGGGCAGAAAGAATGTGCAGCATTATCTGATCATTTGAATACAGAAAGAGGGCAGCAGAAGGAATCATTTTCAATATGTT ATCAACCTAGTGTTACTAATACACCAGTTCGTATGTTTGGACATTCTGTTAGTCACGGAAATTCTGAAAGCCCTGAGGTG AAAATGGTCTCTTGCGTTGATAGTTTTGTGATAGAGACACCTGCACAATCAGCACCTGGGAGATTGTTGCCCGTTTCTGA TGATAAGCTTCAAAACATGACTTACCCAAAGTCTACATCATGTTCTAAGACTGCAAAAAGAGTGCTTGACTTTTCAGGCA TGGAAGGCAATGAAGGATTGGACAATAGAGTAGACATCTCAGAATCTAGCAGCGCTACACATGAATTTCATGGCATCCCT CAACCAAGCATAAGTTTTTCTGAGGATTGCAATTCTTTTGATTCTGTTGCTCTGCCTCTGGAGGTAGAGGAGAGCCTTGG TTACTCTTTTGAGAAAACTGACCAAAATCAAGGTGGTTTAGGGAATAAAAACATATCATCATTGGTGGATATGGTTAATG TGATTGGATCTATATTTCAATCTGTTAAAAGAACTCCAATCACAAAAGAGGAGCTCCTGCAAAAGATAATTATGAACAGT TTGGATTTTGATGAGATTGGAGAAGTTGAAAAACAGATTGAGATTCTGGAAAAGTTGGTGCCGGACTGGATTTGCAAGAA GTTGGTTTCTTCTGGAGATGTTATGTACAGCATCAAGAAAGTGTCAGATTTGGACTCAGTTCGATCAAGGCTCTTCAGTA ATGTGACCGTAGGAATTGAGTAA
Protein sequence (LotjaGi2g1v0174200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPQTCEQSANEYDSSDFKSEKILQAVDKPIMCPTPEKKIEPLPVKSKDEQTQLPEKYRTIADLFRHLSCSLRLLHLHKK PQTFQNICKQVEVLAERKFSYAHLARMKYILPEGILVDKVLVHDKKSLCMKPDIKITLVFDVVEEHCELSADMALRRYFN SRLIDYFKMHPEAADIPEAILPEPCGQRSCHLISEDFPVISSTALSSTSNQIEQSPEKFNLYPSFTRHFSQKIVADQTEK VHDLSSTKTCLSSDVSDCPDIPECERKGQKECAALSDHLNTERGQQKESFSICYQPSVTNTPVRMFGHSVSHGNSESPEV KMVSCVDSFVIETPAQSAPGRLLPVSDDKLQNMTYPKSTSCSKTAKRVLDFSGMEGNEGLDNRVDISESSSATHEFHGIP QPSISFSEDCNSFDSVALPLEVEESLGYSFEKTDQNQGGLGNKNISSLVDMVNVIGSIFQSVKRTPITKEELLQKIIMNS LDFDEIGEVEKQIEILEKLVPDWICKKLVSSGDVMYSIKKVSDLDSVRSRLFSNVTVGIE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 532 | 521 | 3.0E-122 | – | |
| CDD | 35 | 184 | 150 | 4.71686E-43 | – | |
| SUPERFAMILY | 49 | 184 | 136 | 1.03E-28 | ||
| SMART | 54 | 183 | 130 | 5.3E-15 | ||
| Pfam | 54 | 118 | 65 | 6.6E-11 | ||
| Gene3D | 433 | 537 | 105 | 2.6E-9 | – | |
| Pfam | 445 | 505 | 61 | 2.4E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0174200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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