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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0178700 |
| Transcript ID | LotjaGi2g1v0178700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GRAM domain protein/ABA-responsive-like protein; TAIR: AT5G23370.1 GRAM domain-containing protein / ABA-responsive protein-like protein; Swiss-Prot: sp|Q9FMW4|GEML8_ARATH Putative GEM-like protein 8; TrEMBL-Plants: tr|G7KKC8|G7KKC8_MEDTR GRAM domain protein/ABA-responsive-like protein; Found in the gene: LotjaGi2g1v0178700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:60020592..60023374) extracted from Lotus japonicus Gifu genome v1.2.
CAGACTCAGAAACAATGCAGAATGGTATAGGCATTAAGAGAATGATTTGCCTTAATTAGTTACTAGAAGCATGCTAATTG CTAACTGTAGTATCATAATTATTAAATTCTCAGGCCTAGTTATTATGGCGTGTAACGAAATATTAAAGAATTTTGAATGT GTTTCTATAGTTATAAATAAGACTTTAGAATTTTATACGCAAGGTTTTCATCCATTTCCACAAAGCTTTCCTCGGCCAGC TATTACAAGAATTGCAAATATAATCCCAGTATATTTTCAAGAACTCCAATTTGCATAGCAGATTTCTGAAATTTCACTCA ATGATGAAGTCTTTCGGTACCTCTCCTGGGAGATGTTTTACTTTTCATCAGCCTGATGACAATTCTGGTACCTCTACTTC AACCTCCACCAAATCAAGTAAGTGCATCCGTCTATAATTGATTCTAAATGCAAAATCAATTCTCGGAAGAAGCTTTTTTA ACTAGCTTCTGTGTTCCAGAATTGATTATGAGGAAATAGAAGCTGATCCAAATATGCCATAGATGCAGCTTTTCTTCATT TGGTTTCTCTCATCACATCAATATATACTCTACCAATAACAAAATATGTAAGGTATTCTTTTAATCTCTTATTCACTGCA GACAAAGAAAATTCCAAGAAGGGCACAAGAAAGGAAAACAGTAGTCTTGCGTATAGGATTCATGAACATGGTAAGTACTC AAAGTTTAGAGATCACACTAAGAAAAGTGAATCCTTTTGATTAATGTACACCGTGTGTTTGCAGTAAAATTGGGTCCTAA ACTGTCTGAGACTCTGAAAGGTAAGTTGAGTTTGGGTGCTAGGATTATACAAGAAGGAGGGAGAGAGAACATTTTCAAGC ATGTTTTTGGGATGCAAGAAGAAGAGCAATTCTTGAAGGCTTCTCAATGCTATTTGTACACGACAGCTGGTCCTATTGCT GGAATTCTCTTTATCTCCACAAAAAAAGTTGCATTTTGCAGTGAAAGCCCCACATCGTTCTGTTCTGAAGCTGGAGAGAT AGTTAAAGCACCTTACAAGGTAAATCTTGAACCAAATTAACTTTAAGCTTAAACGAATCAGTTCATATAATTGCTATTTT TCTGATAGCAAGGTTGCTGTTATGTATGCAGGTTTTGATACCAATTGAGAAGGTAAAAGAGGTGAATGAAAGCATGAATG TGAACAAGTTAGAACAGAAATACATAGAGGTAGTGACTAAGGATGGCTCTGAGTTTTGGTTTATGGGGTTTTTACGGTAT GAGAAGGCTCTCAGGAATCTCAAGAAAGCTGTTTCAATGGGAAATAGTTGTAAATAGGGGAAATTGAACATTGTAGTTAA GTCTCTGGATGCTTGAGATATACATATAGTAGCTTGGTTTTAGTAATTTTTTTGCAAGTTTGAATGGGATATTAAGCATC TTAAGTTCTTGCTTTATCCCTTATTAGTTGGTGATAATATATGTGTCTTAAGTTAATATATGAATAGGAAATTAAAAGAG CACATTGGGCTCTATAAACCTCAATTATGTGCGAGATTTATGAAGAGCTGCCCACTTCGGAGATCTAGCGTAGGCAGTCT TACCTTGCATTTTTGCAAGAGGCCGATTCCATGGCTCGAACCTGTGACTGCAAAGTCACATGATAGCAACCATACCATTG CACCGAAGCTCGCCCTCATGATTAGGAAATTAAATAAAAGAAACAAAAAAGATGATCAAATGGGTTTGATCACTGATCAT TGATCAATTAGTTAATTTCATCACAAAATGTGCACAAAATCTTACAAAGGCATTTATTTTGCATAACATGAATATTGAAA TTCATGTCATTCTCATTACCAATAGAAAAGCCTAGTATCATTTGACTAATTTTATTCAAATTTTTCTTAGCTTAGGATTG GTGAGAACTTATGCTTGTTTGAACATAATTCTGAAGGGAGGAACTTGATCACTAAGAGACAAATGCTTGTCCCCACCATA GTCATATATCCCAAGTTCCCTGCACAGTGTTTGGCATTTGCATACTGAGGGACAGAAAGAAAACACATAGTCCTTGTCAG CTTTCTCAATCTTGAACCAATTGGAAATGGTGGCCATACCTGGATTGCCTTCAACACCACCAGTAGCTAAAAACCACACC CCACTTAACTCTTTGAGAAGCTTCCACACTGGGGCTTTGGCACAGGTGGTATTTGTCAGAGAGGACTTGATGTTGAGATC AGTTGAGGTGAGGATGACACCACCTTTAGCATTGTAGGGTGTGAAGGTAACTGATTGGCCTTTCAAGACTTCAAGCTTCT CTTGTACCACATGAAGGGGGCATGTGTTGTTGTTGATGTTACCACTGCTTGTAAGTGTTAACCCTCCCCCTTTGCCTCTT AAGACAGGTAAGATGTAGTACTTGACACCTGTTCTCAGTTTCTGGCCTGAGATGTCAAGCACTGGTTCAGGTGCTGCTGC AGAAGCTATGCCAATCAAGAATTCTGTAGTGAAGGCAAAACAAATTATGGAAAATGCTAACTGTGAGGTCTTCATTTTTC TCTTGGCCGGGTTGTAAGAATAGATGTGACTGTTTCTGTATATAGATGAGGAAAGAGGAGCATCTATTTATAGGGCTTAA CAGGGAACATCAGTTATGTGTGTCCAAGATCAATTTGGACAAGGATGATATTTTCATATAGGATTGGGAGAAAGCATTGA CTTTGGTTAGTGGATTGTAGGTCATACTTACAAATAAGTATATTACTAAAATCCTTCTTTATA
CDS sequence (LotjaGi2g1v0178700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAAGTCTTTCGGTACCTCTCCTGGGAGATGTTTTACTTTTCATCAGCCTGATGACAATTCTGGTACCTCTACTTC AACCTCCACCAAATCAAACAAAGAAAATTCCAAGAAGGGCACAAGAAAGGAAAACAGTAGTCTTGCGTATAGGATTCATG AACATGTAAAATTGGGTCCTAAACTGTCTGAGACTCTGAAAGGTAAGTTGAGTTTGGGTGCTAGGATTATACAAGAAGGA GGGAGAGAGAACATTTTCAAGCATGTTTTTGGGATGCAAGAAGAAGAGCAATTCTTGAAGGCTTCTCAATGCTATTTGTA CACGACAGCTGGTCCTATTGCTGGAATTCTCTTTATCTCCACAAAAAAAGTTGCATTTTGCAGTGAAAGCCCCACATCGT TCTGTTCTGAAGCTGGAGAGATAGTTAAAGCACCTTACAAGGTTTTGATACCAATTGAGAAGGTAAAAGAGGTGAATGAA AGCATGAATGTGAACAAGTTAGAACAGAAATACATAGAGGTAGTGACTAAGGATGGCTCTGAGTTTTGGTTTATGGGGTT TTTACGGTATGAGAAGGCTCTCAGGAATCTCAAGAAAGCTGTTTCAATGGGAAATAGTTGTAAATAG
Protein sequence (LotjaGi2g1v0178700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMKSFGTSPGRCFTFHQPDDNSGTSTSTSTKSNKENSKKGTRKENSSLAYRIHEHVKLGPKLSETLKGKLSLGARIIQEG GRENIFKHVFGMQEEEQFLKASQCYLYTTAGPIAGILFISTKKVAFCSESPTSFCSEAGEIVKAPYKVLIPIEKVKEVNE SMNVNKLEQKYIEVVTKDGSEFWFMGFLRYEKALRNLKKAVSMGNSCK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 46 | 46 | - | – | |
| MobiDBLite | 10 | 34 | 25 | - | – | |
| PANTHER | 16 | 205 | 190 | 1.8E-97 | – | |
| PANTHER | 16 | 205 | 190 | 1.8E-97 | ||
| Gene3D | 82 | 202 | 121 | 1.0E-7 | ||
| SMART | 84 | 162 | 79 | 1.7E-11 | ||
| Pfam | 85 | 201 | 117 | 2.8E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0178700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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