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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0180800 |
| Transcript ID | LotjaGi2g1v0180800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat shock family protein; TAIR: AT1G54400.1 HSP20-like chaperones superfamily protein; Swiss-Prot: sp|D9UBX6|RTM2B_ARATH Inactive protein RESTRICTED TEV MOVEMENT 2; TrEMBL-Plants: tr|A0A072UAS6|A0A072UAS6_MEDTR Hsp20/alpha crystallin family protein; Found in the gene: LotjaGi2g1v0180800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:60281838..60286857) extracted from Lotus japonicus Gifu genome v1.2.
CCGTATTTTCTTCCAAAACTTCTACTATATCTTTAGAAGACCATAACCTACTACGTTTTCCAGACACTTTTGGTGATTCT TGTCGCACAATTTCTTTACCCATGTGTTCCATCAAGTCATGTAATGTCACTTCACCATATTGAGTAATCTTTATGAGAGA TTTATCAACCAACACACCAATTTGATATTTAATGCATTGGTCATGATGGGCATTGAGTACATTTTCTACCTCTTTTAATC CATATCCTTTGAAACAACAAGCAACGTCTAAGAAAACACTCTGCTCTTTTTCCTCCAAAGCATCAAAGCTCACTTTAAGT ATCTTTTGGATCTTTTTATCTGGAACCCTTTCATACTGTTCTAATGCAGATTCCCATTCTTGTATACTTTTTCTATACAT GTTAGAACCCAATACTTCCAAAGCCAATGGAAGGCCGGAGGCATAAGCCACTGCACGGTTTAATATGTCTACATAACTTG ATCTAACTTTGTCATTTTTAAAAGCTTTCCATCTGAGCAATTCAAAAGCCGCATTCTCGTTCAGTTCTTTCACTTCATGT GTTCTTTCAACCTCATGGCATGCTAGCAAGTGTTTATCCCGAGTCGTAATGATGACTCTACTACCACGACCAAACCAATT AGGTTTTCCAATAATATCCCTCAACTGCTCCACCGTTTCAACATCATCTAAAATCAGGAGAACCTTCTTTTGTTGGAGCC TGCGTTTTATTATTGAAATTCCTTGTTTGACACCTGTTATCTCAATTTTCTTATCTCCAAGTACATCCAAAAGAAGGGCC TTTTGGAGATGTACTAACCCATGTTTGTTTGAATTTTCCCTAACATTTTCCAAAAACTTAAACCTTCAAAATAGTCAGCA ATCGAATTGTAAACTGCTAGAGCAAGCGTTGTTTTACCTATCCCACCTGTTCCATGGATCCCTACCATGTGAACTCTATC ATCAGACCCAACATCTAAAAGAGAAATTACTTTCCGCACTTGTGACTCGAGCCCAACTGGGTAATCAGCAATAGGTAAAG CAACACGGTTAATCTTTCTTGAGACTTCATTAACAATCTTTCCAATAAACTCGTGTTCATATCCATCTCTGCCCAATAAG AGAAGTGAAGTTTGTGTGAAGCTATAATAATACATCATGTTCATGTTTTTAAGTCTTATTTACTATAACTCAAATTATAA TAATTAGACAATATCTAAAACGCAAGGAAATTAACATAAGAAACACACCCATGTTTGAAGTGCCAGCCAGACAAATCAGC CACCTGTTGTAGAGCTGTCCTCCATTTCTGCAATTTCTCCTTGTTATCTTTGAACCTCTCCATATGCAGGGTCATTGCTT CTCCGTACATTCCTTTTTGCTTCCGCACATCAGAAGGATCCACATCATAGAATACTGGCCAAACGAGGCGACAATTTTCC TTGAAGCAATTGATAATTTTGGAAAGTTCATGTAAACAAAAAGAGGAAGGTGCATAGTTCTTAGATAGCACAACAATAGC AATCCTGGATTTTCGAATGGCGTCCTCAAGTGCTGGGGTGATTTCATCCCCTTTCAGAAGCTCCTCGTCATCAATAAATG TGTGGATTCCATTATCAGATAGAGCTTTGTAGAGATTGCCAGTAAAGCCGTGGCGAGTGTCAGAGCCCCTGAAGCTAAGG AACACATCAAAAGTGAATGAATAGGTGATGGAAGAGGAAGAGGAGGAGGAGGAGGATAGCATAGCCATGAGAAAGAAAGC TTGGAATGATAAGTGTGGAATATGAGTGGTGTGTCTGAGTCTCGAAAAACAAACAAATATTTAAAGAACACGAAACTGAT AGACTTTAAAATGATATATAGCGTACCATATATTGAGTTAGCCTCTTTCTTGTGATGTTTCTCGTTGTTTTTCTAATTTT CGTTCTGATTGGAACCCATGCTTCTTGTTTGTGGTGGAACTGTGGAAGTTGTCACATTAAGCTTGAGTTATAAAACCGTC TCACTTGACCAGTCACTCAAAATATGGACAAAGAAAATGTCAATGCATTAGTTATGCAACAACAGTCTGTTCTTGTTTTT CAATTTTTCATTTATGTTTGGACCCCATGCTTGTTTTTGTGGTGGAAGTGAACCAACGTAGAATGAATGCTACCACTATT ATCACGTAAGAGATTAGTCCTAATTTATTTTTCTCCCTCCACAGACTTTAAGGATTTCAAATTGACTTCAAGGGGCACCA GGGTTACCTACCTTGCACAATGTTCTGCTGTTTAGTATTGGGTCTCTGTCAGTCTTATCCGCAGGAGACAACAAGATTAC ATCAACAGAAAAAGAAGAAATTCAAGAACAATAACACTACTATGATCATTTTCTCCCATTTTCTATTGATCATAGAATCT TTTTAAATAAAATGGTCATTTTTCCCTTGTCTCCCCTCATAATTTCAGAATCTACAAACCTTTTATATTTTTCCCTAAGT ACCAACTATCAAATACCAAATTGAAATGCAATCCCAACTCGCCTTGAAACTTTTACAACTTCAACATACTTACTATTAAA TCCTCAACTGTTTAATTTATGTCCAAACATTTTAGGATGATTTACCATACACATAAAATTGAAAATTGTTACTGTCTTGC TTGGCTGGCCTATTCCCAAACAGAGCATCAGCACATATTTGTCAGTTCACCAAAAAACAAACTAATATTTGCTAAATGGT TTAATAAGTATAATTATTTTCCCTCCAAATTTGACAAGCTGGTGCCTGGTGGCGTGAAAAACTATCAAATTTTCAATTTA AGATGAGAGAAGCCAATCTGATGTTTATGCTTAGTATATCATGCCAAATCAATGATGTAGTGATACCCTATTTTCATAGA AACTGGAATACTATGAAACAACCAGCCATCCAAGCCACACCCTAAGACAATTCATTGAAAGACATTTAACTTGAGTAGGT CATAAAAATGTATGCAAGTATGTTTATATGCCAGAATTTGTAGTGAATAATACGGATTAGGGAAGCACTCTACTCAGAAA AACTATACTTTATTTTTTGAAAGTCAGAAAAACTATACTTTGAATTAGGTGGAATTCTATAAGCATCTCTTATAGTTGTC TCATAAACCTAAGCAATACATTGAACAAATTTAAGTATTTAGTTCCCAAGTTCTTTTGCTGTTTAGTCCCTCAAAAAGAA AATTTAAGTTCACAAGTCACAACTCAGAGATTGTTGGAACAGGGTTTTGGCAATCCTTAAGTTGCAGAAAAAGGAATCAC AAGTCTTATAAGAAAAAGAAAAGGAGCAAAGATGGGGCAGGAAATTGAATCACAAGGCTTCCTTCATTTAAAGCTTAGGC TACTGACTCTAATCTTACCATGGAATACTAAGATTGAAGCAAGCATCCTCCTAGAAAACTTATGCAAATCAAAAAGGTAT AATTCTCATTTAAACTGTGGAAAACCCATCACAAAATTAAACTGTGGAATCTCCAGCTTTGTATTTGTATAAAAAGAGAT TGAGTCACGGTTGTTTCATTCATTCAAACCATTTCCATAACATTTGGCAATAGAAAAATCCCAATTTAGCGAGAGAAGAG AAGCTGAAAGTACCTGCAATGGAAACCAATGCTGCCGGAGCTACAAAGAATAATCGCTTGTATGAGGAATTTGAACCCTA CTGCAAATGGCTTACAAAGGAAGGACAAAAGATTCTTGACATTGATTTGAAAGGTATTAATTAAATTATTTTACACTGAA AATATAAATTGGGGATTGATTATTGGACTTCCTCCGCCCAACTCATATGTCTCCTAACTCTTACCGGTTCAGTTATTGTT GTTCGGGGGCATTAATTAAATTCCTTGCGCAATTTATGTATTATGAGTGAATTTAGTCTGCATTTTAATGACTAAATACA TCATTTATTAAATTAATCTAAAAATTATTTAAGATATCAAACTTAACAATTTCATATTTCTATCCACTTAATTAGAAATA AGTGATAGAATTCTAGAAAGATCAAGAAATATAATAAAAATAATATTGGTTTTTTTTATAAAGGCGAAAGAAAGAAGGCT ACCGCGGGTAGAGATCGACCTTAGGGCCTCCATCAACGTGATGCCACTGCGGGCCCTAGCCGATCATTATATATTCGGTC ACCCTTCAGATGTCGACTATTCTGGCTTCGAGAATTAATCATAGTTAAAGTTTTTCATTCCTCTCGGTGTGTATTGCACT AAGATTGAACTCGATAGTTCTTCTCACACACTCATTCTGCGTTGGCAAATAAGTTACCCCTCTTAGACAAAGATAATTTA GTTTAATGGTATGGTAATATTTTTCCCCCTTAAATTTTTGTAGGTTTCAAGAAGGAGCAACTTAAGGTTCAAACCAACAA CAGAGGAGTCCTCACAATTTATGGAGAAAGGCCTCTAGGGGGTGCATCAAGCACTAAGTGGAGCCGTTTCCACAAAGAAA TCAGGATCTCAAAGGACTGTGATGTGAATGGGGTCCAAGCAAAGTTTTCTCATGGGACTCTTTCAATTGTTATACCTAAA AAAAGTTCACCCATTCAACAAGCAAAAGGTGAAGCCATGGAGAAGTATTCTATTTCCAAGGTAGAAACAAGAAAGAGAAC AGCAATTAAAGTTGCAATTGGATTGTTGGCGGTGGTGGCACTTGGGACTTATATAGCACGGCTAGTAGTAAATAGAAATC CTCATGGTGCTGTTGAGTAAGTTGATGTTGTGAATGTTTAATTTGAACACTATTCAATAAGTTAAGACTATGAAAGCTGA AAATGAAAGGGGCAAAAATCAGATTCATGCTAGTGCATAGGCTTTGAGAAGATTTTCTGTGGTGGTGAGAAAATAAGCAA GGTGCCCATATTTTATATCTTCTTGTAACATATCTTGGAAGAAAAATGAAGACAGATTAAGATCACCTAATTACTGATGC TTGCAATTAGTTTGATCCCATCTTAGTTTGGCAATTGGCAAAGCTAATTTTTTTCCTACT
CDS sequence (LotjaGi2g1v0180800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAACCAATGCTGCCGGAGCTACAAAGAATAATCGCTTGTATGAGGAATTTGAACCCTACTGCAAATGGCTTACAAA GGAAGGACAAAAGATTCTTGACATTGATTTGAAAGGTTTCAAGAAGGAGCAACTTAAGGTTCAAACCAACAACAGAGGAG TCCTCACAATTTATGGAGAAAGGCCTCTAGGGGGTGCATCAAGCACTAAGTGGAGCCGTTTCCACAAAGAAATCAGGATC TCAAAGGACTGTGATGTGAATGGGGTCCAAGCAAAGTTTTCTCATGGGACTCTTTCAATTGTTATACCTAAAAAAAGTTC ACCCATTCAACAAGCAAAAGGTGAAGCCATGGAGAAGTATTCTATTTCCAAGGTAGAAACAAGAAAGAGAACAGCAATTA AAGTTGCAATTGGATTGTTGGCGGTGGTGGCACTTGGGACTTATATAGCACGGCTAGTAGTAAATAGAAATCCTCATGGT GCTGTTGAGTAA
Protein sequence (LotjaGi2g1v0180800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
METNAAGATKNNRLYEEFEPYCKWLTKEGQKILDIDLKGFKKEQLKVQTNNRGVLTIYGERPLGGASSTKWSRFHKEIRI SKDCDVNGVQAKFSHGTLSIVIPKKSSPIQQAKGEAMEKYSISKVETRKRTAIKVAIGLLAVVALGTYIARLVVNRNPHG AVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 131 | 131 | - | – | |
| Gene3D | 2 | 109 | 108 | 3.3E-18 | ||
| PANTHER | 6 | 126 | 121 | 8.6E-40 | – | |
| PANTHER | 6 | 126 | 121 | 8.6E-40 | – | |
| ProSiteProfiles | 12 | 123 | 112 | 15.97 | ||
| SUPERFAMILY | 14 | 107 | 94 | 1.33E-16 | ||
| Pfam | 30 | 110 | 81 | 2.3E-10 | ||
| CDD | 32 | 104 | 73 | 3.64369E-17 | – | |
| Phobius | 132 | 154 | 23 | - | – | |
| TMHMM | 132 | 154 | 23 | - | – | |
| Phobius | 155 | 163 | 9 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0180800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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