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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0184700 |
| Transcript ID | LotjaGi2g1v0184700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta-amylase; TAIR: AT3G23920.1 beta-amylase 1; Swiss-Prot: sp|Q9LIR6|BAM1_ARATH Beta-amylase 1, chloroplastic; TrEMBL-Plants: tr|K7MJ07|K7MJ07_SOYBN Beta-amylase; Found in the gene: LotjaGi2g1v0184700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:61002468..61007589) extracted from Lotus japonicus Gifu genome v1.2.
CGCGTTTTCTGGGAGCTTCACGCGCAATCAAAATCCAACCGTCCATCAAATCTCAAGATCCAGCAATCTCAACTGTTCAA TCCCTCAACCGTTAAAATACCCGCCACGCAACCCAAGGACACGTGTCGCGAAAGCAACGGCCAAATCCAAAGTAGTCACT ATTTTAATATTATCCAGAACCTCGCTTCTTCTCTTTATAAATCGCGACCCTTCCTCTTCCATCTTTTCCTCACACTACAA TCACTAAACCGAATCAAATCGAAAAGAAAAAAATTGTAAAATCAAATTCTTATTATTATTTATTTTCATTTTCCTGCGTT TTCTGGGATTCTATTATTTTCCCGGAAAATTGTGATTGTGAAGCGAGGGTTAAGAAAAGGAGAATCATCAGAATGGCGTT GAGCATGACTCACCAGATCGGAAGCCTCGCCGGGACGCCGGTGACGTCTGAATCTGGCTCCGGAGAGACAACAGCGTCGG TGAGCGCGGCGGCGGTTTGGAAATCTCCGGCGATGAATCTCCGGTGCCAGGTGACTAGGTCAGAGGGCGCGACTGCGGAT GGATTGTCACCGCCGGTGAGTCCGTGCAGGTCGCCGGCGCTGCGGGCGGATCTATCCGCGGCGTGCCAGGCGTTTGAGAC GGCGGTGGTGGAGAAGGAGCATGGAACGGGAGCGAAGGGGGAAGGGAAAGGGACTGGAGTTCCGGTTTATGTGATGATGC CGTTGGATAGCGTGACGATGGGGAATACGGTGAATCGGAGGAAGGCGGTGAACGCGGCGATGGCGGCGTTGAGGAGTGCT GGTGTGGAAGGGATTATGATGGATGTGTGGTGGGGATTGGTGGAGAGAGAGGCGCCTGGGGAGTATAACTGGGGCGGTTA TGCGGAGCTTCTGGAAATGGCGAAGAAGCATGGGTTGAAGGTGCAGGCGGTTATGTCGTTTCATCAATGTGGGGGTAACG TCGGTGATTCTTGCACGTGAGTTCTTCAATCTTCTTCTTCTATTTCATTATTATCGTAAATTGCTATTTGGATAATTTGT CAAATAACCACTTAATCCCAAAAGCTTAAGCTGTTGGGTAAGGGCAACTTTAATGGTTTTATATTATATTCTAACACGCC CCCTCACGCAAGAGCCCTTTGGGCTTGAAGCGTGGACAAATGCACAGGCCCACCTACCAAGTGCTTAATTAAATTCCACT TTTTAATTAGAAAGTGAGGGGAGCGAGGATCGAACTCTAGACCTCTCGGTCATAAAGGCTCTGATACCATGTCAAATAAC CACTTAACCCAAAAGCTTAAGCTGTTGGGTAAGGGCAACTTTAATGGTTTTATATTATATTCTAACATAATTTTCTTAGA ATACTCAGATTCATTGATGATAGCTGAGCCTGAGAGTTGAGGGAAACTTTAGATTTAGATTTTGATAGAATTTATTCAGG AAGAATTGATTTGATTCGTGGTAGTTTACTCAACAGATAGAAAAAAGTTTGTGATAATTTGATAGGATGAATGGATTTAG AATAGTTAATTTAATTTTTTTTTGATAGTTTTATGAACTAAATAATGGTACCTTTATTTTCATAGTAGTTACTTCGGATG TAAGAATTTAGTAAAATATTATTGTAAGAAAAAGAATTTAGTAAAATATTACTATGATACACATTTTAATTTGTTTTAGA ATTTCATAATTTTAATAAATGTTTATTATTAAACTATATTAATAAAACTTAATTAATATTTTACTCAAAATTGATAGGAA ATTAAAAGTCATTTATTAGGAGGAATTGTCACCGATTTTGAATAGGTTAATACGTGTTAAGGATAAATGCATGTTTGAAC TCTTAGGTCCAAAGTTTGATTTTTAGAAGTCACACTCTTGTTCCATAGATGCTGCAAATGTCAGCTTAAGTCAACATGTT AGCTGCAATTCTGAAAAATAGTTTTTCGAATCTTTAGGTCGAAAGTTCAATTACTCTAAGCTGCATTTTTCTCGGGATAT CTTCAACATTTACCACGTCCACCTCTGCGAGAGCTGCCCAATCAATAAAAACGGAGTAGATTTTTACGATTAATATGTTT CACGTTAGAAACAATAATTGTATACACGTGTAGATAGCTTTGGAAAAGCAATAAGATACCCAAAAAGTATTGCTTTTGAT TTTGAATTTCAATTTCTTCTACGCCACAGCAATTCAACCACTAGGCAAATGGACAATAAAAGTTCATACTAAGCGGCTGA AATTCAATTTTGGAAAATCGAGTAATTTAGAAGAATTTTTGCGCCTTTGGCATTGAACTTATCTGGACAAGGCAAATTTG AATAAAATTCAATTGCGTGGTGTTGCGGTCTCAGTTTTTCTGTCACCCTCACCTCTTGAAGGAAATATATGGCTCATATT ATCTTGGGTTAATAAATTATTGTTGTTCTAGTATTATTATTCAAAGACATGGTAAGAATTTTATTTTAGTGACTATTATA TTTGTTTAAAATCAAGTAGGCTAAATTGTATTATTAATTTATTTTTATTATAAGAAGAGGCGTGAGCAGTACGGTGTAAT AAACCGACCAATCTCATTTTATTTGTGGCCTTTAGTGGAAAAGTAAACAAAAGGAAAGTGTGTGGTTTCGTGAAGGATAG ATGAGGACACGTGAGGTTTAGACTTGTACGCATTCTCACATGGGCATCGTTCCAAAAAGTGGACTAGCTTTTTACGATTA GATTTGATGAATTTTATGTTTCAGCCAATAATTTATTCAGCCAAAATAATTTTCTATTTCCTGGCTAGTTGGAACTTGAT AATTCATCCAAAATAATTTCATAATTGATTAATTTACTAATTATTATGCCAGTTGCTAAGTTTGTCTTCTGTCTACATTT TTGATTGCATTGTTTGTTTGATTTGATACTGTTCAAGTGTAAAATGTAAATGCCTGGTGTTTTCTTTGTGGCTTACAAAT TTTTCTTGTGTGCAGTATTCCCTTGCCGAAATGGGCTGTGGAGGAGATTGAGAAAGATCCTGATCTTGCATATACTGATC AATGGGGAAGAAGAAACTATGAATATATATCTCTTGGGTGTGATACTTTACCAGTACTCAAGGGCCGTACACCAGTTCAG TGTTATGCTGATTTCATGAGAGCTTTCAGAGACAATTTCAAGCACCTTCTTGGTGACACTGTTGTGGTAAATATTTTTCA TCCCTGTTCACAATTCTGTCTAATTTAACTGCGTAATTTGTTGCTTAATACCATGCTGTGTTTTGTTGTATGATTATGAT ATAGCTTCTTACCTGAATTTCTATCAATGTCAAAATTCAGGAAATCCAAGTTGGGATGGGACCAGCTGGTGAGCTGCGTT ACCCCTCATACCCAGAGCAAAATGGGACATGGAGATTCCCAGGAATTGGTGCTTTCCAATGCTATGACAAGGTGCATATA TATCCTTTATGTTTTTTTGTCTCTGTTATGTAGTGCTTGGAAATCATTCTTCAACTGATTCTAAAATTAAAATCAATTTT AAGGAGAAGTCTCTGAGTAACTTCTGAATCCTAGAATTGATTCGGAAGAAAGCTCATACAAATATATGCTAATAATCGTG TCGGAAGTGTTATTTGGCTTCAAATTCTAATATTCTTAGTTTCACTATGTTGCAGTATATGTTGAGTAGCTTAAAAGCTG CTGCTGAAGCTGAGGGTAAGCAAGAATGGGGAAGCACTGGCCCTACTGATGCTGGCGAATATAACAACTGGCCAGAAGAC ACTGCATTTTTCCGCAGAGAAGGTGGAGGCTGGGATAGTCATTATGGTGAATTTTTTCTCACCTGGTATTCTCAGATGCT GTTAGATCATGGTGAAAGAATTCTCACATCAGCCAAATCAATCTTTGACAGCACTGGAGTTAAGATCTCAGTGAAGGTTG CTGGTATTCACTGGCACTATGGTACAAGGTCTCATGCTCCAGAGCTTACAGCAGGATACTACAACACCCGCTTCCGCGAT GGCTACCTCCCCATTGCTCAAATGCTTGCACGCCATGGTGCCGTGTTTAATTTCACGTGTATTGAGATGCGTGATCACGA GCAGCCACAAGACGCTCTCTGTGCACCGGAGAAGCTCGTGAACCAAGTGGCTTTAGCTACGCAGAAGGCACAGGTCCCAC TTGCTGGGGAAAACGCTTTGCAAAGGTATGATGAACATGCACATGAGCAGATACTCAAGTCAGCACAGTTGAATGATGAC ACAGAGATGTGTGCCTTTACATACCTGAGGATGAACCCGCAGTTGTTCCAACCTGATAACTGGAGGAAGTTTGTTTCGTT TGTGAAGAAGATGAAAGAAGGGAAAGGTACCCACAAGTGTTGGGAGCAGGTAGAGAGGGAAGCTGAGCATTTTGTGCATG TTACACGGCCTCTTGTGCAAGAGGCTGCCTTGATGCACTGAGAATTGTTGGATTTCCACTTATTACACATCAATAGAGCT TAGAAAAGTAGCCACGAGTAGGCTGTTAAAAGTTTTAGGGAACTAGCAGCCATGGTTTTCTGGCTATGCAGATGTGTAAT TTTGTATTATATTGTAGTACTTCACAACATCTTGTTATTTGCTTCTAAAACTTGTATCTGTTACCCTTGATATTTGTATA GATTATGTTCGGATACCCGTCATGATTTAGTACTTAGTATGCATTTTAAGATAAATTGTTACTGAACGGTGTATTGGCAG AAATGATTACATTCAATTACACAAGCAAACGGGATTAGGTGGTAAATTGGTCTTGAAGCGGACTGCATGTTCCTTACTGC TGTCCACCTAACATGAGGGGCTTTGTGGCGATCATTGGGCGAGCTGGGCGAGTTCTCCTCATATATTAGGAATGATCCAC TGATAAAGAATGCCCGCAGGAACGATTCGCCTATGAAGATAGAAAGCCTACCAAAGTACAAGACTAATTACATTGGTTAC AGGTAAATTCATGTTGGATGAATTAAAAAATCTTTTATTAGTTCGTGTTTTTTTATGAAGAGAACAATCTTTTTATGGAA GGATCATTAAAAAATGGGTCTAGAGTTCTTGTAGAAATATTTGGAAGATTCAAAACCAACTATTTACTAGCAATAATACA AT
CDS sequence (LotjaGi2g1v0184700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTTGAGCATGACTCACCAGATCGGAAGCCTCGCCGGGACGCCGGTGACGTCTGAATCTGGCTCCGGAGAGACAAC AGCGTCGGTGAGCGCGGCGGCGGTTTGGAAATCTCCGGCGATGAATCTCCGGTGCCAGGTGACTAGGTCAGAGGGCGCGA CTGCGGATGGATTGTCACCGCCGGTGAGTCCGTGCAGGTCGCCGGCGCTGCGGGCGGATCTATCCGCGGCGTGCCAGGCG TTTGAGACGGCGGTGGTGGAGAAGGAGCATGGAACGGGAGCGAAGGGGGAAGGGAAAGGGACTGGAGTTCCGGTTTATGT GATGATGCCGTTGGATAGCGTGACGATGGGGAATACGGTGAATCGGAGGAAGGCGGTGAACGCGGCGATGGCGGCGTTGA GGAGTGCTGGTGTGGAAGGGATTATGATGGATGTGTGGTGGGGATTGGTGGAGAGAGAGGCGCCTGGGGAGTATAACTGG GGCGGTTATGCGGAGCTTCTGGAAATGGCGAAGAAGCATGGGTTGAAGGTGCAGGCGGTTATGTCGTTTCATCAATGTGG GGGTAACGTCGGTGATTCTTGCACTATTCCCTTGCCGAAATGGGCTGTGGAGGAGATTGAGAAAGATCCTGATCTTGCAT ATACTGATCAATGGGGAAGAAGAAACTATGAATATATATCTCTTGGGTGTGATACTTTACCAGTACTCAAGGGCCGTACA CCAGTTCAGTGTTATGCTGATTTCATGAGAGCTTTCAGAGACAATTTCAAGCACCTTCTTGGTGACACTGTTGTGGAAAT CCAAGTTGGGATGGGACCAGCTGGTGAGCTGCGTTACCCCTCATACCCAGAGCAAAATGGGACATGGAGATTCCCAGGAA TTGGTGCTTTCCAATGCTATGACAAGTATATGTTGAGTAGCTTAAAAGCTGCTGCTGAAGCTGAGGGTAAGCAAGAATGG GGAAGCACTGGCCCTACTGATGCTGGCGAATATAACAACTGGCCAGAAGACACTGCATTTTTCCGCAGAGAAGGTGGAGG CTGGGATAGTCATTATGGTGAATTTTTTCTCACCTGGTATTCTCAGATGCTGTTAGATCATGGTGAAAGAATTCTCACAT CAGCCAAATCAATCTTTGACAGCACTGGAGTTAAGATCTCAGTGAAGGTTGCTGGTATTCACTGGCACTATGGTACAAGG TCTCATGCTCCAGAGCTTACAGCAGGATACTACAACACCCGCTTCCGCGATGGCTACCTCCCCATTGCTCAAATGCTTGC ACGCCATGGTGCCGTGTTTAATTTCACGTGTATTGAGATGCGTGATCACGAGCAGCCACAAGACGCTCTCTGTGCACCGG AGAAGCTCGTGAACCAAGTGGCTTTAGCTACGCAGAAGGCACAGGTCCCACTTGCTGGGGAAAACGCTTTGCAAAGGTAT GATGAACATGCACATGAGCAGATACTCAAGTCAGCACAGTTGAATGATGACACAGAGATGTGTGCCTTTACATACCTGAG GATGAACCCGCAGTTGTTCCAACCTGATAACTGGAGGAAGTTTGTTTCGTTTGTGAAGAAGATGAAAGAAGGGAAAGGTA CCCACAAGTGTTGGGAGCAGGTAGAGAGGGAAGCTGAGCATTTTGTGCATGTTACACGGCCTCTTGTGCAAGAGGCTGCC TTGATGCACTGA
Protein sequence (LotjaGi2g1v0184700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALSMTHQIGSLAGTPVTSESGSGETTASVSAAAVWKSPAMNLRCQVTRSEGATADGLSPPVSPCRSPALRADLSAACQA FETAVVEKEHGTGAKGEGKGTGVPVYVMMPLDSVTMGNTVNRRKAVNAAMAALRSAGVEGIMMDVWWGLVEREAPGEYNW GGYAELLEMAKKHGLKVQAVMSFHQCGGNVGDSCTIPLPKWAVEEIEKDPDLAYTDQWGRRNYEYISLGCDTLPVLKGRT PVQCYADFMRAFRDNFKHLLGDTVVEIQVGMGPAGELRYPSYPEQNGTWRFPGIGAFQCYDKYMLSSLKAAAEAEGKQEW GSTGPTDAGEYNNWPEDTAFFRREGGGWDSHYGEFFLTWYSQMLLDHGERILTSAKSIFDSTGVKISVKVAGIHWHYGTR SHAPELTAGYYNTRFRDGYLPIAQMLARHGAVFNFTCIEMRDHEQPQDALCAPEKLVNQVALATQKAQVPLAGENALQRY DEHAHEQILKSAQLNDDTEMCAFTYLRMNPQLFQPDNWRKFVSFVKKMKEGKGTHKCWEQVEREAEHFVHVTRPLVQEAA LMH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 561 | 561 | 0.0 | – | |
| MobiDBLite | 1 | 25 | 25 | - | – | |
| PANTHER | 1 | 561 | 561 | 0.0 | ||
| Gene3D | 95 | 562 | 468 | 7.6E-206 | – | |
| SUPERFAMILY | 102 | 538 | 437 | 1.24E-189 | ||
| Pfam | 106 | 524 | 419 | 1.0E-140 | ||
| PRINTS | 137 | 151 | 15 | 6.8E-66 | ||
| PRINTS | 158 | 176 | 19 | 6.8E-66 | ||
| PRINTS | 180 | 201 | 22 | 6.8E-66 | ||
| ProSitePatterns | 184 | 192 | 9 | - | ||
| PRINTS | 262 | 271 | 10 | 2.3E-7 | ||
| ProSitePatterns | 272 | 282 | 11 | - | ||
| PRINTS | 272 | 294 | 23 | 6.8E-66 | ||
| PRINTS | 348 | 367 | 20 | 6.8E-66 | ||
| PRINTS | 384 | 400 | 17 | 6.8E-66 | ||
| PRINTS | 401 | 412 | 12 | 6.8E-66 | ||
| PRINTS | 419 | 442 | 24 | 6.8E-66 | ||
| PRINTS | 422 | 432 | 11 | 2.3E-7 | ||
| PRINTS | 456 | 478 | 23 | 6.8E-66 | ||
| PRINTS | 504 | 518 | 15 | 2.3E-7 | ||
| PRINTS | 519 | 533 | 15 | 2.3E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Polysaccharide catabolic process | The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. | ||
| Molecular function | Beta-amylase activity | Catalysis of the reaction: (1,4-alpha-D-glucosyl)(n+1) + H2O = (1,4-alpha-D-glucosyl)(n-1) + alpha-maltose. This reaction is the hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides so as to remove successive maltose units from the non-reducing ends of the chains. |
Expression pattern of LotjaGi2g1v0184700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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