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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0185200 |
| Transcript ID | LotjaGi2g1v0185200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G20230.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230; TrEMBL-Plants: tr|A0A1J7HTC8|A0A1J7HTC8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0185200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:61126185..61134229) extracted from Lotus japonicus Gifu genome v1.2.
ATCTATTTCCTCTTCCATTTGTGTCTAAGCTGATGTCATCATAAAGAACAAATGAACCAGAAGTAGAACCATACCTCTCA TGCTCCTGAAACAAGAACAGAACAACCTGCGACTATGTTCCAAATCGAAACACCCAAACTCAGATAACATCATCATCATC ATTCCATCGTACCACATTGCAGCAACAACAACAGTGAGAGTGAGTAACCACTGAAACACAAAACCTTTCTCTATGTTCCC CGCCATATACAACAGCATCTCCCAATGCCTCAACTCAACCACCGCCACTCTCTTCCACGCTCGACAAGCCCATGCCCACT TCCTCAAATTCAACCTCTTCACCGACATCCACCTCACCACACGCCTCCTCTCTCTCTACGCCGACAACCTCAGCTCCTCC CAGCTCAACCTCGTACTCTCTTCCCTCCCTCAACCCTCCCTCTTCTCCTTCTCCTCCATCATCCAAGCTTTTGTCAAATC CCACCACTTCCGCCATGTCCTCGGCGCGTTCTCTGAAATGGGTTCTCGCGGCATTGTCCCTGATGGGTTTCTTCTCCCAA GTGCCATCAAGGCTTGTGCCGCGTTGCAAGCGTTGAAACCTGGGATGCAGGTTCATGGGTTTGCTTATGCTTCTGGGTTT GTTTCGGATTCGGTTGTGATGTCTTCGTTTGTGCATATGTACTTGAAATGTGACCAGCTTGGGTTTGCCCAGAAGCTGTT TGAGAGTATGCCTGACAGGGATGTGGTTGCTTGGAGTGCTATGATTTCCGGTTACTCGCGTCGTGGACTTGTTGACAAGG CGAAGGAGCTCTTTTCTGAGATGAGGAATGAGGGCGTGGAACCTAATTTGGTGTCGTGGAATGGCATGGTTGCTGGGTTC AGTGGTACTGGTTCGCATGCTGAGGCGGTGAAGTTGTTTCAAATGATGTTATCAGAAGGGTTTTTGCCTGATAGGTCTAC TGTTTCTTGTGTTCTTCCTTCTATAGGGATCTTGGAGGATGTGGTGATGGGTGCGCAGGTTCATGGTTATGTGATCAAGC AAGGGTTGGGATCGGAAAGTTTTGTGGTGAGTGCACTTCTTGACATGTATGGAAAATGCGGGCGTGAATTTGAGATGTCT CGGGTGTTTGATGAAGTGGATCAAAAAGAAGTAGGTTCTTTGAATGCTTTTCTTACTGGTTTGTCACGTAATGGTCTGGT TGACACTGCACTGGAGGTGTTTAACAAGTTTAAGGCCCAAGAAATGGAGTTGAATGTTGTGACATGGACGTCAATAATAG CCTGCTGCTCCCAGAATGGGAAAGATCTGGAAGCTTTGGAGCTTTTTAGAAATATGCAGGCTGATGGGGTGGAGCCTAAT GCTGTAACAATCCCTAGCTTAATTCCTGCTTGTGGAAATATTTCAGCATTAATGCATGGGAAGGAAATACATTGCTTTTC TCTCAGGAAGGGAATTTCTGATGATGTATATGTAGGCAGTGCATTAATAGATATGTATGCCAAGTGCGGAAGAATCCAGT TATCTCGACGTTGTTTTGATAAAATGTCAGCCCCAAATTTGGTTTCTTGGAATGCAATTATGAAAGGATATGCAATGCAT GGAAAGGCTAAGGATACAATTGAGATGTTTCATATGATGCTGCAAAGGGGCCAGAAGCCTGACCCAGTTACCTTCACATG TTTGTTGTCTGCATGCACTCAAAATGGCTTAACAGAAGAGGGATGGTACTATTTTAATAGCATCTCCAAAGAGCATGGCG TCGAAGCTAAAATGGAACATTATGCTTGCATGGTGACGCTTCTCAGTCGTGTAGGAAAACTCGAAGAAGCTTATTCTATC ATCAAGGAAATGCCATTTGAACCTGATGCTTGTATATGGGGAGCCTTGCTAAGTTCTTGCAGAGTTCACCATAATTTGAA TTTAGGTAAGATTGCTGCAGATAAGCTTTTCCTGTTAGAACCAGACAACCCTGGTAACTACATTCTTATGTCCAATATAT ATGCGTCAAAGGGTATGTGGGATGAAGTAAATAGAATACGTGATGTGATGAAAAGTAAGGGTTTGAAGAAAAACCCTGGC TGTAGTTGGATTGAGATCGGACACAGAGTACACATGCTTCTTGCTGGTGACAAATCACATCCACAAATGGAAGAGATTAT GCAGAAGTTGGATAAATTGGGCATCGAGATGAAGAAGTCTGGTTACTTCCCTAAGACTGACTTTGCTCTACAAGATGTGG AGGAGCAAGATAAAGAGCAGATATTGTGTGGGCACAGTGAGAAGTTGGCAGTAGTATTAGGACTGCTCAACACAAGTCCA GGACAACCTCTTCAAGTGATTAAGAACCTAAGAATATGTGATGATTGCCATGAAGTTATAAAAGTTATAAGCAGATTGGA AGGAAGAGAAATTTTTGTAAGAGACACAAATCGTTTTCACCATTTCAAAGATGGTGTTTGCTCTTGTGGTAATTTTTGGT GAACTGCTCGTTGTTTTCTGGTGACTTTTCTTCAAGAGGATTCAATTCTCTGCCAAGGGTCTTTCCAGTAGACATGAAAA CAGATTATTCATTAATCAATAGATGTGCATTATCAATAATTTGATGCCCATGGAGTTAGTCATCTTTAGATCAAAGATAT GTGTACTTTTGGTGACTGGCGAATAAATTGATCTTTGTGACCTCGTCGGTTTTTATTTGGGAAACCTTTTTCTTCACTCC CCTTTGTTCTTGTAGTGAAGGTTTATAGCAACCTTATGTAGAATATATGAAGGGGAGACAACTTGCAGGTCTGGATATGC TCACAGAAAATTTGAGGAACTTCAATATTTATTACTTGCCTAACTCTATTGTTTTCTTTAGGATTGATATGGAGCAGCAG TATCTAGTATAGACTATAGAGTATTATGATTTGAAGCTTTTTAATTGATGAGATTTGAAATAAACTTTGGTATTTCAGAA CCTGTTGAAATGTTAATGTTCACAGGTCTGTTACTTTGACACAAGCCCTCCTCTGTCCTTTTCAAGGCCTGGTATACTTT GATCAGCATGATTGTGGATACAGGTATGAGGAAGAATTCCTAGAATCATATACTGAATTGCCAAACCACCTGATTTCTGG CTCTCTCCAACAAGCATTTCGTGGCTAATAGATTATGTAGGTTAACTATGTCCATGTAAGTGGTAGATACCTGATTTAAC ATCAGTTGATTAATTCAAAGATATGTTAATTTGAAGCTGAGTCTTCACAGCCTCAAAATCGTTCAGTAGTTTTTTTTTTT GTTCTCTGGAGCAGCAGGGCTTGTATTTCTTCTTGTTTACATTGTTTTTGTCCAATGGGAATAAAAACTTCTCCATTGTA AATTTTACTTCTTTAACTGTGGCTTCATGTGGGTATGAAGGCACTATGTACATGTCTTATGTTTGAAATTTTAGAAAAGT GATTCTCATGCTTCTCTGCTTGTGACATTTCTGTTTTCACTTGCTTGGCTGCTACTATTATGTTTAGGGCTTTGATTCCC TTCAAAACCGTTCCAATTCAATATGTGAACATTCCTAAATGTCGGGGATGATTGCAAGTTGCAACACGCTTCTCCATAGT GGAGACAACCAAACAAGGGAAGGTTTGGTCCCTCAAAAAAAAAACTTCATGACAATATATTAAAAACAATTTTTCTGAAA TCGTTTTTAAAAATTATTTTTATTAAAGCAATTTTTTTCTTATTTGTTTGTTGTTTTAAAAATTTAAGGTAATATTTTTT TTGAACGTTAAGATAATAATATTAATTATCACTTTTTAATGTATTTGGTTTCATTTGTTTATTTTAAAAGTTTTACTAAA AATAACACATTGAATAAATAAACCAAACAATATATAATAATTTTAATATACATTACATAAAAATATTATTGTTGTTTTAA ATCGGTGAACGAAGCATCCTAATGCTAGAAGGTAGGCAATGAAGCATCCCAAATCCAACAAACTAACCACAAACCTAAGG AAAAGAAACTAGGGGATGTCCTCTCGCTGTAAATTGTCATCACGCTAAGACCAGCCTGACATATCAAGAGAATCAATTTC AAGAAACAAAACTACATTAAGTGCCCAAGGGCCTTTGTCGCAACACCTACACAAATCATGAACCATCTTCACCTCCCATG GCGAAAAAAGTGACACACTAGTATTAACCTTCTTCCCCTCAAAGCGTCACTCCAAGACTTTGTTATAACATAATCGCATG GCAACGAAAATGATGAACCAAACCCATCTATCTTCGTCGTCGAATCTTTGGCCCAGGCCTTCCGAATACTCACCTTCACA GATCAGAGGCCTAGCAAAAACAGCAAATATAACTTCACCTCCAACTTGATACCCATCCACATATCAGATAGCCTCGAAGA CTTCCTTCCTACTATAGGCGAATCTTATGAACCCAAACTAGAACTTCTGACCCTGTTTCCTCACCCGTCGAATAAAAACA TTCCTCAGCTTTCCCAAATGCTTGAAAAGACCTTGAACCCTGGTGATACCCACCCGAATAAGCAATCCCATCAATGAACA ATGATGTACACAACGAAAGTGAGACGCGTTCGACCCTAGCACTTTTCCCATCACTATCATCATCTGACTCACCTTCACCA TCATCATCCTCGATCTAGCCCACCGATCACTGTTGCCACCAGCATCTGTCTCACTTGCCACATAGCCATAAAGGCAACAA AAACATTAAGTTAATTTGAAAGACAAACTATAAAATAAAATGTTATCACACTTATTTTTACTATCTTCACTTTTTTTTTT GTTTCTATGAACTTAAATATCACCTTATTTTTTTATATTTCATTCTTTTATATTTTTTCCTCTAATATTTTTTCTCTCAT TTTTATATCTACATCCCAAACTAAGCATTTATCAGGTTTCTCACAAACACTACCCCAAACACAAACTATCTCGTTCAACC CTGGACTAGACACAACTCGTTCAAACCACCAGTTCCTAATCCCAGCCACCACTACTCCGCCGCCGTCAGTGATTCCATCG CCGGCGTCGTTTTACACCGTAGCCAGCAAAACACAAAGCGTACAACACAGCCCAAACCTCGAACCACCACCATCATCGAC CCAACTGCACCAACAGCCGTCGCAGGGTGACTCTGATCTGCCGGAGCCGCAGCCAGCTCTAGGTGCATCCACAATCACAA ATGGCACCAGGTGGTGACACGAACGACGGTGTTTTCCCAACTCCATCACGGAAGACTCAGCGGTTCACCACCTCCACCGG AACCCTAACATCACCTTCGCTCCCTTCCTCTTCCAACTCTCCCGGCGGTGACCTTCGTCCGCCGCTGACACTTCCCACAC TTCCATTCGAGCTCATGGAAGTTATCCTCTGCAGGCTTCCGGTGAAGTCTCTCTTGCGATTCCGGTGCGTCTGCAAGTCC TGGAATCTCCTGATTTCCGATCCCAAATTCGCCAGAAGGCACCTTCGCGAGTTCAACCGCTACAATCTCATTGTAAAATC CAGGAACCATGTCAACTCTTATTCACACAGCTCCACCACTTTCAACAACACAATGATTCTCAGCTCGACGCGGCTAGAGT ACCCTCTCAACCGCGATATCCGTAACGATCTCGTTGGCTCGTGCGATGGTATGCTCTGTTTCTGCGCCCCAAATGGTGCC TGTCTGGTATGGAACCCTTCTATTAGGATATCTATAGAATTGCCACCATTGGAACATATCAAGGTAGAATCGTTAGGGTT TGGTTACGATATTCTCACTGAGACTTACAAGGTGGTAATAGTTATTTTTGCTTCGAGCTACCATGCTCGTGTCGTGGTTC AAACTTTGGGTACCAATTCTTGGAGAAGTATTGAGGATTTTACTGGTCATTCCTACTTTCAGGAATTTGGGAAATTTGTT AGTGGAACAATTAACTGGTTGGCAGGTTCGTGGTCTGCCAATAATTGGTCTAACCTGTTTATTAATTCTCTTGATTTGGT GAAGGAGTCATGGTCTAAACTTTGCCTGCCTGATGTATACGACCCCACATTGGGAGTGTTGAGAGATTGCTTGTGTGTCC TTTATGAAAAGCAATTTTTTTGGGATGTTTGGGTCATGAAGGAGCATGGAAATAATGAGTCATGGACAAGATTGTTCAAT ATTCCTATTCCTGTTCACAATGGGGGTCTTGGTTATGTTCCGCGTAACCACTCACGTAATATTTCTGAGGATGATGAAGG AATAATGCTGCAATCGCTGCCTTCCTTTACTAATTTAGTTGTTTATAAGGAATATGGCTTCAATGATGATATTTTTACGA TTTTTTGTATTGGAAACAACCAAGCTAGGATGCTCCCAGAGATCTACCATGAGCCAGTGGTCTGCGCGGAGAGTTTGATA TCACCATGTTTTCAATATTAGATGTAGGTTTTATATGCCACTTGTGCATTAGGTTCTTGAAGAATCCATAAGTTGCATGG ATGTTTGTTAATTAATACTCGATGTAATATATTGCAAGTATTTGGGTTTCATAGAACTTTCATGTAAGACCTCTTTGGAT GTTGGACACTTACGTAAGGCCTCTTTTAAGAGCTTATCTAGTTCTCTACAAACCGTGTCTGTTTGTCTCCATCTTAACCT AATTTGGTTTCATGGAATGGCGTTGTTTCTGGGTTCAGTAATACTGGTTCACTTGCTGAGGCGGTGAAGTTGTTTCAAAT GGTGTTATCAGAGGGGTTTTTGTTGATGGGTCTACTGTTTCTCGTGTTCCTCCTGCTATAGGGAACTTGGAGGATGTGGT GATGGGTGCGCAGGTTCATGGAAATGTGATCAAGCAAGGTTGAAATCGAACAATTTTGCGGAAGAATCCAGCTATCTCGA CATTGTTTTGGTAAAATGTCAGCCCCAAATTTGGTTTCTTGGATTGCAATTATGAGTGGATATGCAATTTAGGTGCTTCA TATAATGCTGCTAAGTGGCCAAAAGCCTGACTCTTCATAATGTTCCATTTTAGCTTCGACGCCAGCCCTCTCCTGTTAAC CCATTTTGAGTTGGAGAGTTAATGTTGACTGTTCTGTTCCTTTGACACGGGCCCTCCTCTGTCCTTTTCAAGGCCTAATA TGCTTTGATCAGCATGATTGTGGATACAGGTATGAGGAAGAATTCGTAGAATCATATACCGAATTGCCAAACCACCTGAT TTCTGGCTTTCTCCAACAATCATTTCATGGCTAATAGATTATGTAGGTTGCTTTGAGTAGATTTTTCTTTACAAAAGAAA AGTAAACTATGTCCATGTAAATGGCAGATACCTGATTTAACATCAGTTTATTAATTCAAAGATATGTTAAATTGAAGCTG TCTTCACAGCCTCAAAATCCTCCAGTAATTTTTTTTTTGTTCTCTGGAACAGCAGGGCATGTATTTCTTGTTTGCATTGT TTTTGTCCAATGGACATAAAAACTTTTCCTTTGTAAATTTTACTTCTGTAACTGTGGCTTCATGTGGGTATGAAGGCACT TTTACATGTCTTACTAGTTTTATAAGGCACGGGGGAATTTATTCTCGATTTTTTTTTTTTTAAATTGGTTGAAATCATTT TTTAATATTTATTTATTAAAGTGATTCTCATGCTTCTGCCTGTGACATTGTGAATTTAGTGGATCATGCTAGGCAGTTTC TTGAGACTTTGCACATTTATTGCTCTGATTACTTCACCTGCTTGGGTGCTACTACTATTATTTTTGGGCTTTGATTCCCT AGTTGTGGGGTTCATTAGTAACACCAGTTACACCACCACTCCCATCTCAAATATGAGGATATTTATGTCACAATTCACAA TATATCTTTTTCTTCCCTTTCACATTTCCTTCCATTATCTCCAATATCAAACAACTAAATATAATCCTCTCAAAAACCAA AAACCATTGAGGTAGGGTTGGGTTTACTGCCAATGAGGTGAAACGAAATCAACAAGATATCCTTTATTGTTATTGTGTTT TTTTGTTTAGCGCCAAAGGGAAGGCTTTCACACTGAACATTTTCC
CDS sequence (LotjaGi2g1v0185200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCCCGCCATATACAACAGCATCTCCCAATGCCTCAACTCAACCACCGCCACTCTCTTCCACGCTCGACAAGCCCA TGCCCACTTCCTCAAATTCAACCTCTTCACCGACATCCACCTCACCACACGCCTCCTCTCTCTCTACGCCGACAACCTCA GCTCCTCCCAGCTCAACCTCGTACTCTCTTCCCTCCCTCAACCCTCCCTCTTCTCCTTCTCCTCCATCATCCAAGCTTTT GTCAAATCCCACCACTTCCGCCATGTCCTCGGCGCGTTCTCTGAAATGGGTTCTCGCGGCATTGTCCCTGATGGGTTTCT TCTCCCAAGTGCCATCAAGGCTTGTGCCGCGTTGCAAGCGTTGAAACCTGGGATGCAGGTTCATGGGTTTGCTTATGCTT CTGGGTTTGTTTCGGATTCGGTTGTGATGTCTTCGTTTGTGCATATGTACTTGAAATGTGACCAGCTTGGGTTTGCCCAG AAGCTGTTTGAGAGTATGCCTGACAGGGATGTGGTTGCTTGGAGTGCTATGATTTCCGGTTACTCGCGTCGTGGACTTGT TGACAAGGCGAAGGAGCTCTTTTCTGAGATGAGGAATGAGGGCGTGGAACCTAATTTGGTGTCGTGGAATGGCATGGTTG CTGGGTTCAGTGGTACTGGTTCGCATGCTGAGGCGGTGAAGTTGTTTCAAATGATGTTATCAGAAGGGTTTTTGCCTGAT AGGTCTACTGTTTCTTGTGTTCTTCCTTCTATAGGGATCTTGGAGGATGTGGTGATGGGTGCGCAGGTTCATGGAAATGT GATCAAGCAAGGTTGA
Protein sequence (LotjaGi2g1v0185200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFPAIYNSISQCLNSTTATLFHARQAHAHFLKFNLFTDIHLTTRLLSLYADNLSSSQLNLVLSSLPQPSLFSFSSIIQAF VKSHHFRHVLGAFSEMGSRGIVPDGFLLPSAIKACAALQALKPGMQVHGFAYASGFVSDSVVMSSFVHMYLKCDQLGFAQ KLFESMPDRDVVAWSAMISGYSRRGLVDKAKELFSEMRNEGVEPNLVSWNGMVAGFSGTGSHAEAVKLFQMMLSEGFLPD RSTVSCVLPSIGILEDVVMGAQVHGNVIKQG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 23 | 155 | 133 | 9.2E-12 | ||
| ProSiteProfiles | 69 | 103 | 35 | 9.624 | ||
| Pfam | 71 | 101 | 31 | 0.013 | ||
| TIGRFAM | 72 | 104 | 33 | 3.7E-5 | ||
| PANTHER | 108 | 205 | 98 | 2.3E-27 | – | |
| ProSiteProfiles | 139 | 169 | 31 | 7.191 | ||
| Gene3D | 156 | 270 | 115 | 1.3E-26 | ||
| ProSiteProfiles | 170 | 204 | 35 | 14.261 | ||
| Pfam | 170 | 216 | 47 | 2.5E-13 | ||
| TIGRFAM | 172 | 205 | 34 | 1.0E-10 | ||
| ProSiteProfiles | 205 | 239 | 35 | 11.279 | ||
| TIGRFAM | 207 | 240 | 34 | 9.0E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0185200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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