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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0186000 |
| Transcript ID | LotjaGi2g1v0186000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane 9 superfamily member; TAIR: AT2G01970.1 Endomembrane protein 70 protein family; Swiss-Prot: sp|Q9ZPS7|TMN3_ARATH Transmembrane 9 superfamily member 3; TrEMBL-Plants: tr|G7KJN8|G7KJN8_MEDTR Transmembrane 9 superfamily member; Found in the gene: LotjaGi2g1v0186000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:61346081..61350786) extracted from Lotus japonicus Gifu genome v1.2.
ATCAAACATTAGAGTGTGGCGGTGAGTCTACGTCACTCGTTTCTTTCATCTCTCATCCGTTTTTATTAACACAAACACCA CATCAAATCCTTCGTGTTCTCCTCTCTCTTCACACCATTCTTCTCGCGGGTTTGCATTGCATTCTTCACTTTCTTCAACG ATTTCCCTCTGGTTTCAGATTCATTCACCTGTGTTGGGTTGAATCCAATCAACCATCAACAATGGCGAAGGTGAAGCTCT TGCTCCCCTTCATCATCGCCTTCCTCCTCTCTCTCTCCTCCTCTGTCAGATCTGACCCCTCCGATCACCGCTACAAAGAC GGAGATCTCGTCCCTCTTTACGCCAACAAGGTTGGCCCCTTCCACAACCCCAGGTACCCATTCCCCATTCCAGATCCGCT TTTCATAGATTCAACTGCATTTCATTTGATTTCATTATAATCTGTTGATTTTGATTTTTCAGTGAGACCTATCGTTATTT TGATCTGCCATTCTGTTTACCAGGTTAGTTATTTCTGTTGCTGTTTTGTTAAAAAGTTTGCATTTTGAGATGTGGGGTGT GATTATTTTTTTGTGGGGTTTGTGATTTGTTTGTTGCTGTTTAGATCATTTGAAAGAGAAGAAGGAGGCTCTAGGTGAGG TGTTGAATGGGGATCGATTGGTGAGTGCGCCTTATAAGCTTGAGTTTCAACGTGACAAGGACTCTGTAGTGGTTTGTAAG AAGACGCTTAAGAAGGATGATGTGGTGAAGTTTCGATCCGCGGTTATGAAGGACTATTACTACCAGATGTATTATGATGA CTTGCCTATTTGGGGTTTCATTGGGAAGGTTGATAAGGATGGGAAGGATCCTAGTGATTATAGATACTACCTTTACAAGC ATATTCATTTTGATATCTCTTATAACAAGGATCGTGTCATCGAGGTCAATGTGAGGACCGATCCGACTGCTCTTGCGGAT GTCACTGAGGATAATGATGTTGATGTGGAGTTTATGTATACTGTGAAGTGGAAGGAGACCACCACCACTTTCGAGAAGCG TATGGAGAAGTACTCCCAGGCTTCCTCAATGCCTCATCATTTGGAAATCCACTGGTTCTCGATTATTAATTCTTGCGTGA CGGTGCTCCTTCTGACCGGATTTCTCGCAACTATCCTGATGCGGGTTCTTAAGAACGATTTTGTCAAGTAAGAAGGATTT ACTATCCGTGTTTGTTTTCTGGTGTGCCTATTCAATATAATTAGGTAGAGAATCTCTTGGTTTTTTTGCTGTGTTCTAGT CTTTATATGTGACTATGTGTCACCCCTGTTTGACTTCTAAATAGGTATGCACATGATGAGGAAACAGCTGAAGACCAGGA AGAGACTGGTTGGAAATATATCCATGGTGATGTATTTAGGTTTCCCAAGTACAAGTCTGTTTTCGCAGCTGCCCTTGGAT CTGGTACCCAGCTGTTTACCCTGTAAGTTTCTTCTGTCACATCAAAATGTCTCTATTACAAAATACTCAACTGTTTACCC TATAAATTGTTATATTTTTTATCCTTAATTCATCTCAATAAATTGTATTTGTGCATGCTATGCAGTACGATATTCATATT CATATTGGCACTTGTTGGCGTATTTTATCCGTACAATCGAGGAGCTCTATTTACTGCGCTTGTTGTCATATATGCACTCA CTTCAGGAATTGCTGGCTATACTGCAACCTCATTCTATTGTCAACTGGAAGGAACAAACTGGGTATTCACTTGCACATTA ATTTCTCCAATTTGATCCTGTATCCATTATACTTGCATTTGTTTTCAATCATGAGTATAGTTTCTTCATGTTTGTCTTTT TATCATGACAGGTCAGGAACTTGCTATTGACTGGATGCCTTTTCTGTGGACCTCTGTTCCTGACATTTTGCTTTCTGAAC ACTGTTGCAATTACTTATAATGCTACTGCTGCTCTCCCATTTGGCACAATTGTGGTTATAGTTCTCATATGGACACTTGT CACATCTCCTTTGCTTGTGTTGGGTGGGATTGCTGGGAAGAATAGCAAGGCTGAATTTCAAGCTCCCGTCCGCACAACTA AATATCCAAGGGAGATTCCACCTTTGCCATGGTATCGCGGAGCAGTTCCACAGATGGCGATGGCAGGATTTTTGCCTTTC AGTGCTATATACATTGAACTCTACTATATATTTGCCAGTGTTTGGGGTCACAGGATATACACCATCTATAGCATCCTGTT CATTGTCTTCATCATTCTCTTGATCGTTACTGCTTTCATTACTGTAGCATTGACATACTTCCAGCTCGCTGCTGAGGATC ACGAGTGGTGGTGGAGGTATGAAATCACTATTCATCACAACTTGTTTTACTGCCTCTACTCCTTATGGCTTAGGATTTGT ATTGTGGCTAGGTGGTGAATATGAGATGTGAATTGATTTGTCAATTAACTGTGTCTTGGGCATAGTAGTCAATCGCGGCA AATCGCGCCGCTATAGCGCCGTCGCGGCCCCTCCCTGCGATTCTGAAACAATTGCGTCGCGGATTTCTGTCGCGGCTGTC GCGGCGCGATTCGCGGCCGAAATCGCGGTCAATCGCACCAGATCGCGGCGCGACAGGGAGAAGAGAAGAGGAACTCACGT AAAAGACTAAATTGCCCTTGAATTTTTACAATTAGGTTAAACTTTGAGGGTACTTTTGGTATTTCATTCTGAATAAATGA AACGCGCGTTTCACTTTCTTCACTATTCATCTTCTTCTTTCTTCTGCGAATCTGGTCATTGTGCGACGCGACCTCCTTCA GCCACCGTCGATCAGCACCCATGGCCACCACCCGACCTCCGACAAGCACCGCCCACTTCCGGCGACCACTGTGCGGTGAC TTTCAACCAATCTCCGGCGACCACTGCCCCTGTTTCCCTTGGGCCTCTGTTATGCTCTGTTTTTTGTTATCTTTATATTC CTCTATTTTTCCTTTCCTTTCTTTTCCTCTTTATTTTTCCATTCTCAATCAATTCATTTTGTTACCTTTGGTGCTGGAAG ATCCTCCTATCTTCTCTATCATTTCATCAGGTTATGAATTTTAAGTTATATTTATCATTTTTTAGTTATTTTATGTATAT ATGTATATACTATTATACTATTAATTATATAAAATTATATATGAAAAATCAGAATAGCGGCCATCCCGCTATCCCACTTT TGGGGTCGGCCGCTACGCGCCGCTATCCGGGATTGACTACTATGGTCTTGGGTGACATTATGATGGATATAGATCGAGTG GTAATATGAAATGCTAGGATACTTTTTTTTTTTAAATCTCTTGAATATAATACAATGAAATTTCCAATTAAAGTGAGTTA TGATGATAGATCAAAATGCATAAATTTCCAATGGCAAAATATTGGTCATGATGTTTTTCGACAAGTACTTCAAACTCTTA GAATTCTTAACTGAATTGGCTGATTCTTTATTGATGGGTTGTGGAGTGTGTGATTCTGACACATGAGAAGCATGTAAATA TTCTTGCTTTTATGATTCTATTTTTGTTTCTTGATTTTTCTGACTTCAATGCCACCATTCCTGGAGAAAAGTTGGGTCCT CTAGATTGCAATCTTTCTTGCATAATGCAATCTATTAATTCACAATCATATGTGCCTTGACCTTTTGATTTTTGGGATGT TCACTTTCAAAATGAATCACATGACTTGCATGAGGTCTGAGTTTATGTGAAATTGTAAGTTTCTCACTTGACCTATGTGT TCTTATTTCCTTACAGATCATTTCTATGTGGTGGTTCAACTGGCTTATTTATCTATGCCTATTGTCTGTATTACTACTAT GCGCGCTCCGACATGTCCGGGTTCATGCAAACCTCATTTTTCTTCGGATACATGGCCTGTATATGCTATGGTTTCTTCTT GATGCTTGGAACTGTTGGATTCCGTGCAGCATTGTTCTTTGTCCGTCACATATACCGATCCATTAAGTGCGAGTAGGCAT TTTGTCCTCTCAAGTCTCCAGTCCACTAGAGCTATTGTCTTCATTTCATAGGCATTCTGTAGAAAATTATAGTTATTTTG CAGTTCTTTTGTGTACTTTAAGGGAAGCTGGGTTGGGTGGGATTCTGGCTTCCACATCAACTTGGTTAGATCACAAAGGG TGATTTTGAGTATAACGTCTGTACTACCATCTCTTTTAACCGAACTCTTGCAATACATTTTGTTTTGGTCTATGTGAACG TACTTTTCATCATGTCAATTTTTTCAGCTTTGTCAAAACAACTCAGTTCTACTGAAGTTAATAACAAATCCTAATTGCAA CACATTGATTGGTTGCATCATAGAGTAACTAATGATACATTTCCGAAAATGGCTGTCACTTAAAGCAGCAGTATGTCCTG AAGAGCACCATGCTCTGTCAAATGAACAACTTGATTCAATCATTCACTAATTACAGTATTTATATACACTGATAATGAAT AACTAACTGATAATGAATAACTATAAGCTTCTAACTATCAATTAACATATTTCAGTTAAAAAGTTACTGCCTATACAACC GGTACAAAACTGTCTAGTAGTAATGAGTTAAATCAATGCTATGATCTAATCAATGCTATGATCTAATAGCCGCCCTCAGA CTGGGGTGGATATTCAGCACACCCAGCTTGGAAATTAAGGAGGTGGTGAAATGGCATAGGTTCCAG
CDS sequence (LotjaGi2g1v0186000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAAGGTGAAGCTCTTGCTCCCCTTCATCATCGCCTTCCTCCTCTCTCTCTCCTCCTCTGTCAGATCTGACCCCTC CGATCACCGCTACAAAGACGGAGATCTCGTCCCTCTTTACGCCAACAAGGTTGGCCCCTTCCACAACCCCAGTGAGACCT ATCGTTATTTTGATCTGCCATTCTGTTTACCAGATCATTTGAAAGAGAAGAAGGAGGCTCTAGGTGAGGTGTTGAATGGG GATCGATTGGTGAGTGCGCCTTATAAGCTTGAGTTTCAACGTGACAAGGACTCTGTAGTGGTTTGTAAGAAGACGCTTAA GAAGGATGATGTGGTGAAGTTTCGATCCGCGGTTATGAAGGACTATTACTACCAGATGTATTATGATGACTTGCCTATTT GGGGTTTCATTGGGAAGGTTGATAAGGATGGGAAGGATCCTAGTGATTATAGATACTACCTTTACAAGCATATTCATTTT GATATCTCTTATAACAAGGATCGTGTCATCGAGGTCAATGTGAGGACCGATCCGACTGCTCTTGCGGATGTCACTGAGGA TAATGATGTTGATGTGGAGTTTATGTATACTGTGAAGTGGAAGGAGACCACCACCACTTTCGAGAAGCGTATGGAGAAGT ACTCCCAGGCTTCCTCAATGCCTCATCATTTGGAAATCCACTGGTTCTCGATTATTAATTCTTGCGTGACGGTGCTCCTT CTGACCGGATTTCTCGCAACTATCCTGATGCGGGTTCTTAAGAACGATTTTGTCAAGTATGCACATGATGAGGAAACAGC TGAAGACCAGGAAGAGACTGGTTGGAAATATATCCATGGTGATGTATTTAGGTTTCCCAAGTACAAGTCTGTTTTCGCAG CTGCCCTTGGATCTGGTACCCAGCTGTTTACCCTTACGATATTCATATTCATATTGGCACTTGTTGGCGTATTTTATCCG TACAATCGAGGAGCTCTATTTACTGCGCTTGTTGTCATATATGCACTCACTTCAGGAATTGCTGGCTATACTGCAACCTC ATTCTATTGTCAACTGGAAGGAACAAACTGGGTCAGGAACTTGCTATTGACTGGATGCCTTTTCTGTGGACCTCTGTTCC TGACATTTTGCTTTCTGAACACTGTTGCAATTACTTATAATGCTACTGCTGCTCTCCCATTTGGCACAATTGTGGTTATA GTTCTCATATGGACACTTGTCACATCTCCTTTGCTTGTGTTGGGTGGGATTGCTGGGAAGAATAGCAAGGCTGAATTTCA AGCTCCCGTCCGCACAACTAAATATCCAAGGGAGATTCCACCTTTGCCATGGTATCGCGGAGCAGTTCCACAGATGGCGA TGGCAGGATTTTTGCCTTTCAGTGCTATATACATTGAACTCTACTATATATTTGCCAGTGTTTGGGGTCACAGGATATAC ACCATCTATAGCATCCTGTTCATTGTCTTCATCATTCTCTTGATCGTTACTGCTTTCATTACTGTAGCATTGACATACTT CCAGCTCGCTGCTGAGGATCACGAGTGGTGGTGGAGATCATTTCTATGTGGTGGTTCAACTGGCTTATTTATCTATGCCT ATTGTCTGTATTACTACTATGCGCGCTCCGACATGTCCGGGTTCATGCAAACCTCATTTTTCTTCGGATACATGGCCTGT ATATGCTATGGTTTCTTCTTGATGCTTGGAACTGTTGGATTCCGTGCAGCATTGTTCTTTGTCCGTCACATATACCGATC CATTAAGTGCGAGTAG
Protein sequence (LotjaGi2g1v0186000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKVKLLLPFIIAFLLSLSSSVRSDPSDHRYKDGDLVPLYANKVGPFHNPSETYRYFDLPFCLPDHLKEKKEALGEVLNG DRLVSAPYKLEFQRDKDSVVVCKKTLKKDDVVKFRSAVMKDYYYQMYYDDLPIWGFIGKVDKDGKDPSDYRYYLYKHIHF DISYNKDRVIEVNVRTDPTALADVTEDNDVDVEFMYTVKWKETTTTFEKRMEKYSQASSMPHHLEIHWFSIINSCVTVLL LTGFLATILMRVLKNDFVKYAHDEETAEDQEETGWKYIHGDVFRFPKYKSVFAAALGSGTQLFTLTIFIFILALVGVFYP YNRGALFTALVVIYALTSGIAGYTATSFYCQLEGTNWVRNLLLTGCLFCGPLFLTFCFLNTVAITYNATAALPFGTIVVI VLIWTLVTSPLLVLGGIAGKNSKAEFQAPVRTTKYPREIPPLPWYRGAVPQMAMAGFLPFSAIYIELYYIFASVWGHRIY TIYSILFIVFIILLIVTAFITVALTYFQLAAEDHEWWWRSFLCGGSTGLFIYAYCLYYYYARSDMSGFMQTSFFFGYMAC ICYGFFLMLGTVGFRAALFFVRHIYRSIKCE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 6 | 16 | 11 | - | – | |
| Phobius | 17 | 24 | 8 | - | – | |
| Phobius | 25 | 225 | 201 | - | – | |
| PANTHER | 33 | 591 | 559 | 0.0 | ||
| PANTHER | 33 | 591 | 559 | 0.0 | – | |
| Pfam | 54 | 548 | 495 | 7.5E-170 | ||
| Phobius | 226 | 249 | 24 | - | – | |
| SUPERFAMILY | 226 | 408 | 183 | 5.89E-5 | ||
| TMHMM | 228 | 250 | 23 | - | – | |
| Phobius | 250 | 290 | 41 | - | – | |
| Phobius | 291 | 319 | 29 | - | – | |
| TMHMM | 297 | 319 | 23 | - | – | |
| Phobius | 320 | 324 | 5 | - | – | |
| TMHMM | 324 | 346 | 23 | - | – | |
| Phobius | 325 | 349 | 25 | - | – | |
| Phobius | 350 | 360 | 11 | - | – | |
| TMHMM | 361 | 383 | 23 | - | – | |
| Phobius | 361 | 384 | 24 | - | – | |
| Phobius | 385 | 389 | 5 | - | – | |
| Phobius | 390 | 414 | 25 | - | – | |
| TMHMM | 396 | 418 | 23 | - | – | |
| Phobius | 415 | 451 | 37 | - | – | |
| TMHMM | 450 | 472 | 23 | - | – | |
| Phobius | 452 | 471 | 20 | - | – | |
| Phobius | 472 | 482 | 11 | - | – | |
| Phobius | 483 | 509 | 27 | - | – | |
| TMHMM | 485 | 507 | 23 | - | – | |
| Phobius | 510 | 520 | 11 | - | – | |
| TMHMM | 517 | 539 | 23 | - | – | |
| Phobius | 521 | 541 | 21 | - | – | |
| Phobius | 542 | 552 | 11 | - | – | |
| TMHMM | 552 | 574 | 23 | - | – | |
| Phobius | 553 | 581 | 29 | - | – | |
| Phobius | 582 | 591 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi2g1v0186000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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