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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0191600 |
| Transcript ID | LotjaGi2g1v0191600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing protein; TAIR: AT1G66160.1 CYS, MET, PRO, and GLY protein 1; Swiss-Prot: sp|Q9C8D1|PUB20_ARATH U-box domain-containing protein 20; TrEMBL-Plants: tr|A0A151REC2|A0A151REC2_CAJCA U-box domain-containing protein 21; Found in the gene: LotjaGi2g1v0191600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:62306648..62308575) extracted from Lotus japonicus Gifu genome v1.2.
TAGACATAGAAAATATTTACGTGTTCAAGTGGGTATATATATATATATAGCCACCATACACATACACATGAACAAACCCA ATTGAAGAAGACCCATCAAAATTCTCTTACAAAGTTTCAAACCTGATCAGCTAAAAGCACAACTCACCTCACAAAAACAA CATAGCCACCGTGTTTTCATTCATCAGGTTGTTTCTATCTCAATCTGTGAAGATGGTGTTGGGTTGGAGAAGAAGGAAGA GTAGCAGCCACCATAAAAATTCAAGGCCTAAAGTTGAGTTGGAGATTCCCAATCACTTCAGGTGCCCAATTTCTCTTGAT TTGATGAAGGATCCTGTAACATTGTCCACTGGAATCACCTATGATCGTGACAGTGTTGAAAAATGGTTTGATGATGGGAA CTACACGTGCCCTGTTACAAACCAGATTGTGAAGAATTTTGACATGATCCCAAACCATTCTTTAAGGATGATGATTCAAG ATTGGTGTGTGGCAAATAGGCAACATGGAGTTGAGAGAATCCCAACTCCAAGAACACCCATTAGCCCAATGGAAGTTTCT GATCTTCTTTTTCAAGTGAAGGCATCATCAAAGCGTTTTGATCAATATGGTTGTTTAGAATTGGTGCAGAAGATTGAGAG ATTGGGAGCAGAGAGCGAGAGGAACAAGAAAATCATAGTGGACAATGGAGCACCGGGTGCATTAGCCTCAGCTTTTGATG CTTTTGCAAATGATTCTGTGGAGAGGAATGTTCTTGTTCTTGAAGAGATTCTGTCAGCACTGAATTGGATGTTTCCACTT CAGTTGGAGGCTCAGAAATCTCTGGGGTCTCAAGCTTCTTTAAATTGCATTGTTTGGTTTTTGAAGCACCAAGATCTTCA GGGGAAAGAGAAATCCATTGTTGCATTGAAAGAGCTTCTCTCTTTTGGTGATGAGAACCATGTAAAGGCTCTCTCAGAGA TTGAAGGAGCCAATGAGCTCTTGGTAGAGTTCATCAACAAGAGGATTAGCCCAAAAATCACAAAAGCTTCATTAAGAATA GTTTGGTACATGTGTAGTTCAAACTCTTCTAGTGAGAAGGTGAAATTGGCTTTTGTGGAATTGGGTTTGGTTTCTTCTCT TTTGGACATTCTCATTGACTCAGAAAAGAGCATGTGTGAGAAGGCTTTGGCTATCTTGGACTCTCTCTGCAGTATTGAAG AAGGGAGGGTGAAGGCTTGTGGTAATGATTTGACAATTCCTGTGTTGGTCAAGAAGCTGTTGAGAGTCTCTGCATTGAGC ACAGGGTACTCTGTTTCTGCTATGTGGAAGCTGTGCAAGTTTGGAGAGAAAAAAGATGATGATGATGAAGGGAGAGTTTT GGTTGAGGCACTTCAAGTTGGTGCCTTTCAGAAGCTCTTGTTGGTGCTGCAAGTTGGTTGTACTGAGGAGACCAAGGAGA GAGCAACTGAGCTTCTCAAACTGCTGAATCCTTACAGGGCTGACTTGGAATGCATAGACTCAGATTTCAAGAATCTCAAG AGATCATTTTAAACTCAGTTTGGATCAGTTTCTTTTTTCTCAAAATTAATTCTACTAGTCAGAAGCTACTCTCATTACCA TAACTGATTCTAGCTTCTGAATTAATTGTAGAAGAATTTTTATACATACACTTTTATTTTACCTAGGAGTATGATGAATT ATGTGTACATGTTTTTGGGCTCATGGATCCCTGCTGTTGCTCGTACTCAACTACTCATGGGATTCAAAGAATCCATAAAT AGATAGGAAACATCTAAAATAACATTCTTTTGTATATCTTTTTTTTTTTGAATAATAAAAAAATAAAATAAAATTGTACT GCATGGTCTGGAATGAGACAGAGAGAAGATTTTAGTCTACTGCAAGTTTACAATAGTCCACATATTTGAACTTGAACCAA CCAGTTCA
CDS sequence (LotjaGi2g1v0191600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTTGGGTTGGAGAAGAAGGAAGAGTAGCAGCCACCATAAAAATTCAAGGCCTAAAGTTGAGTTGGAGATTCCCAA TCACTTCAGGTGCCCAATTTCTCTTGATTTGATGAAGGATCCTGTAACATTGTCCACTGGAATCACCTATGATCGTGACA GTGTTGAAAAATGGTTTGATGATGGGAACTACACGTGCCCTGTTACAAACCAGATTGTGAAGAATTTTGACATGATCCCA AACCATTCTTTAAGGATGATGATTCAAGATTGGTGTGTGGCAAATAGGCAACATGGAGTTGAGAGAATCCCAACTCCAAG AACACCCATTAGCCCAATGGAAGTTTCTGATCTTCTTTTTCAAGTGAAGGCATCATCAAAGCGTTTTGATCAATATGGTT GTTTAGAATTGGTGCAGAAGATTGAGAGATTGGGAGCAGAGAGCGAGAGGAACAAGAAAATCATAGTGGACAATGGAGCA CCGGGTGCATTAGCCTCAGCTTTTGATGCTTTTGCAAATGATTCTGTGGAGAGGAATGTTCTTGTTCTTGAAGAGATTCT GTCAGCACTGAATTGGATGTTTCCACTTCAGTTGGAGGCTCAGAAATCTCTGGGGTCTCAAGCTTCTTTAAATTGCATTG TTTGGTTTTTGAAGCACCAAGATCTTCAGGGGAAAGAGAAATCCATTGTTGCATTGAAAGAGCTTCTCTCTTTTGGTGAT GAGAACCATGTAAAGGCTCTCTCAGAGATTGAAGGAGCCAATGAGCTCTTGGTAGAGTTCATCAACAAGAGGATTAGCCC AAAAATCACAAAAGCTTCATTAAGAATAGTTTGGTACATGTGTAGTTCAAACTCTTCTAGTGAGAAGGTGAAATTGGCTT TTGTGGAATTGGGTTTGGTTTCTTCTCTTTTGGACATTCTCATTGACTCAGAAAAGAGCATGTGTGAGAAGGCTTTGGCT ATCTTGGACTCTCTCTGCAGTATTGAAGAAGGGAGGGTGAAGGCTTGTGGTAATGATTTGACAATTCCTGTGTTGGTCAA GAAGCTGTTGAGAGTCTCTGCATTGAGCACAGGGTACTCTGTTTCTGCTATGTGGAAGCTGTGCAAGTTTGGAGAGAAAA AAGATGATGATGATGAAGGGAGAGTTTTGGTTGAGGCACTTCAAGTTGGTGCCTTTCAGAAGCTCTTGTTGGTGCTGCAA GTTGGTTGTACTGAGGAGACCAAGGAGAGAGCAACTGAGCTTCTCAAACTGCTGAATCCTTACAGGGCTGACTTGGAATG CATAGACTCAGATTTCAAGAATCTCAAGAGATCATTTTAA
Protein sequence (LotjaGi2g1v0191600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLGWRRRKSSSHHKNSRPKVELEIPNHFRCPISLDLMKDPVTLSTGITYDRDSVEKWFDDGNYTCPVTNQIVKNFDMIP NHSLRMMIQDWCVANRQHGVERIPTPRTPISPMEVSDLLFQVKASSKRFDQYGCLELVQKIERLGAESERNKKIIVDNGA PGALASAFDAFANDSVERNVLVLEEILSALNWMFPLQLEAQKSLGSQASLNCIVWFLKHQDLQGKEKSIVALKELLSFGD ENHVKALSEIEGANELLVEFINKRISPKITKASLRIVWYMCSSNSSSEKVKLAFVELGLVSSLLDILIDSEKSMCEKALA ILDSLCSIEEGRVKACGNDLTIPVLVKKLLRVSALSTGYSVSAMWKLCKFGEKKDDDDEGRVLVEALQVGAFQKLLLVLQ VGCTEETKERATELLKLLNPYRADLECIDSDFKNLKRSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 4 | 103 | 100 | 2.2E-28 | ||
| PANTHER | 15 | 439 | 425 | 8.4E-213 | – | |
| SUPERFAMILY | 15 | 101 | 87 | 9.71E-30 | – | |
| PANTHER | 15 | 439 | 425 | 8.4E-213 | – | |
| ProSiteProfiles | 24 | 98 | 75 | 36.764 | ||
| Pfam | 25 | 96 | 72 | 9.0E-20 | ||
| SMART | 28 | 91 | 64 | 1.6E-26 | ||
| CDD | 29 | 71 | 43 | 7.25554E-27 | – | |
| Gene3D | 127 | 420 | 294 | 3.9E-17 | ||
| SUPERFAMILY | 181 | 386 | 206 | 9.6E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi2g1v0191600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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