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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0194300 |
| Transcript ID | LotjaGi2g1v0194300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G62930.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic; TrEMBL-Plants: tr|A0A072TFX1|A0A072TFX1_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi2g1v0194300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:62738374..62740526) extracted from Lotus japonicus Gifu genome v1.2.
ATTGTAATTAACAATGGAGTTCGTAAAAAATTACCCGTACATCGCACATGTAAACGGGTTATATCCTAGTGATAGACGAA ACCAACAACCTCATTCCATAGTACAACATTTTAGGAACCCGCAATATCTGACTTAAGTAAAGTATTAATTAATTAGAGAA ATTAAAATTAAAGAAATTAACCACGTATTCAAAACCCAGCAACAAAACCCCATAGCCACAGTGTTATCGTTTTCGATTCT TAAACCCTACAATGTCGTCATCTTTGTTTCAGTTAAGGAGGTTTTTCTTCAACCCTTCTTTTCTTCTTCACTCTCCGCCG TGCCGTTTCTCTCACAAGGCTCACTACGCCGTTTTAGGTTCCCTTGCGAGGTCTAAGAAGTATTCCGCTGCAATTTCCCT TTCTCGACAACTGGAATTCACAGGAAATGCATCTGATATTGTTAACTTGAACACCTTGATCAATTGATCAATTGTTACTG CCACTTGGGTCGAATCAGCTCTGCATTCTCTGTATTAGGCAAAATTCTCAAGAGGGGTTATCACCCATGTTCCATAACCT TCACTACACTCATCAAAAGTCTATGTCTTAATGGCGAGGTTCCGAAAGCATTGAAGTTTCATGATCATGTTGTAGCTAAG GGGTTTCAGTTAGCCCCTGTTGGATATGGGACCTTGATCAATGTGTTATGTAAAGTGGGAGAAACAAAGGCTGCCATGCA GTTTCTGAGACTAGTTGAAGGGAACCCTGATGTGCTAATGTATAGTAAAATCATTGATAGCCTCTGCAAAGATAAACTTG TGACTGATGCATTTGATTTATATCACGAAATGATTGTCAAGGGAATTTCTCCTAATGTTGTCACTTACCATGCTCTAATC CGCGGCTTGTGTGTCGCGGGGAAATGGAAGAAAGCTGTTGGTTTGTTCAAGGAAATGGAATTGAAAAACAACATCAAACC AGATGTTTCTACCTTTAATATATTGGTTGATGCTTTATGTAAGAAAGGAAAGGTGAAACAAGCTAAGAATGTGTTAGCTG TGATGATAAGAAAACAAGGTGTGGAGCCGGACTTGGATACTTATAGTACCTTGTTGGATGGGTATTGTCTAACTAAGGAC ATGTACAAGGCCAAATATGTATTCAACGCTATGGAGCGAGGGGGAGTGACTCCTAATGTTGATAGCTACAGTATTATGAT TAATGGGTTCTGTAAGGTTAAATTGGTGGATGAAGCCCTGGCCCTCTTCGAAGAAATGCATCACAAAGAGCTTATTCCTA ATACGGTAATATATAATTCTCTTATTGATGGTTTGTGCAAGGCCAGACGAATCTCCTGTGCTGTTGAGCTTGTTGATGTG ATGCATGATACAGGTCACCCAGCTGATTTAATCACCACCAATTCCTTATTCAATGGTTTATGCAAAAACCATCTTCTTGA CAAGGCAACTGCATTGTTCATGAAAATTAAAGATCACATAATTCAGCCAAATATACACACCTACACAGTGATAATTGATG GACTATGCAAAGTTGGAAGGCTTAAGAATGCACAAGAGATTTTTCAGGTTCTTCTGAGTGAAGGCTACAATTTAAATGCC ATGATGTATACTGTTATGATCAATGGGTATTGTAAAGAAGGTTTACTAGATGAGGCTCAGGCCTTGCTGTCAAAAATGGA AGACAATGGTTGCATTCCTAATGCTGTGAATTTTCAATCAATAATTTGTGCTCTCTTTCAAAAAAATGAGAATGAGAAGG CAGAGAGACTTGTTCGTGAAATGATTGCTAGAGATCTATTTTAAGAATGAAAGAATACATTGAAGTCTTTTTCTTCTGTT CACTGTTAGATCTTGTATTGACTAATGAAAGTCTTTCCCTCTCCTTTTTACTGACTATTCTACTAAAATACCATGTCTGC AGTAAGGGACTGTGCTGCTAATAATATAAATGTTTTCTTCTTAAAGTCTTTATCTAACAAATCTAAAAATGTTTGACATT GTTCTGAGTTACTGGCAGTTTGTACTAGAGTGATCAAATTAGATGTCTTATATCTTGTGTGACTTGCAAAATAGATAACC ATGTCTGCAGTAAGGGAATGTGCTGCTTCCCAGGATAGCTCATAGAGGTTTGTCTTATCTCATGTATACTTGA
CDS sequence (LotjaGi2g1v0194300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGTTTCTGAGACTAGTTGAAGGGAACCCTGATGTGCTAATGTATAGTAAAATCATTGATAGCCTCTGCAAAGATAA ACTTGTGACTGATGCATTTGATTTATATCACGAAATGATTGTCAAGGGAATTTCTCCTAATGTTGTCACTTACCATGCTC TAATCCGCGGCTTGTGTGTCGCGGGGAAATGGAAGAAAGCTGTTGGTTTGTTCAAGGAAATGGAATTGAAAAACAACATC AAACCAGATGTTTCTACCTTTAATATATTGGTTGATGCTTTATGTAAGAAAGGAAAGGTGAAACAAGCTAAGAATGTGTT AGCTGTGATGATAAGAAAACAAGGTGTGGAGCCGGACTTGGATACTTATAGTACCTTGTTGGATGGGTATTGTCTAACTA AGGACATGTACAAGGCCAAATATGTATTCAACGCTATGGAGCGAGGGGGAGTGACTCCTAATGTTGATAGCTACAGTATT ATGATTAATGGGTTCTGTAAGGTTAAATTGGTGGATGAAGCCCTGGCCCTCTTCGAAGAAATGCATCACAAAGAGCTTAT TCCTAATACGGTAATATATAATTCTCTTATTGATGGTTTGTGCAAGGCCAGACGAATCTCCTGTGCTGTTGAGCTTGTTG ATGTGATGCATGATACAGGTCACCCAGCTGATTTAATCACCACCAATTCCTTATTCAATGGTTTATGCAAAAACCATCTT CTTGACAAGGCAACTGCATTGTTCATGAAAATTAAAGATCACATAATTCAGCCAAATATACACACCTACACAGTGATAAT TGATGGACTATGCAAAGTTGGAAGGCTTAAGAATGCACAAGAGATTTTTCAGGTTCTTCTGAGTGAAGGCTACAATTTAA ATGCCATGATGTATACTGTTATGATCAATGGGTATTGTAAAGAAGGTTTACTAGATGAGGCTCAGGCCTTGCTGTCAAAA ATGGAAGACAATGGTTGCATTCCTAATGCTGTGAATTTTCAATCAATAATTTGTGCTCTCTTTCAAAAAAATGAGAATGA GAAGGCAGAGAGACTTGTTCGTGAAATGATTGCTAGAGATCTATTTTAA
Protein sequence (LotjaGi2g1v0194300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQFLRLVEGNPDVLMYSKIIDSLCKDKLVTDAFDLYHEMIVKGISPNVVTYHALIRGLCVAGKWKKAVGLFKEMELKNNI KPDVSTFNILVDALCKKGKVKQAKNVLAVMIRKQGVEPDLDTYSTLLDGYCLTKDMYKAKYVFNAMERGGVTPNVDSYSI MINGFCKVKLVDEALALFEEMHHKELIPNTVIYNSLIDGLCKARRISCAVELVDVMHDTGHPADLITTNSLFNGLCKNHL LDKATALFMKIKDHIIQPNIHTYTVIIDGLCKVGRLKNAQEIFQVLLSEGYNLNAMMYTVMINGYCKEGLLDEAQALLSK MEDNGCIPNAVNFQSIICALFQKNENEKAERLVREMIARDLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 105 | 105 | 4.3E-31 | ||
| Pfam | 10 | 39 | 30 | 5.2E-6 | ||
| PANTHER | 10 | 88 | 79 | 3.5E-94 | – | |
| ProSiteProfiles | 12 | 46 | 35 | 11.367 | ||
| TIGRFAM | 15 | 48 | 34 | 9.2E-9 | ||
| Pfam | 46 | 96 | 51 | 6.9E-17 | ||
| ProSiteProfiles | 47 | 81 | 35 | 10.939 | ||
| TIGRFAM | 49 | 84 | 36 | 1.6E-9 | ||
| PANTHER | 69 | 206 | 138 | 3.5E-94 | – | |
| ProSiteProfiles | 83 | 118 | 36 | 11.542 | ||
| TIGRFAM | 86 | 119 | 34 | 7.4E-7 | ||
| Pfam | 115 | 147 | 33 | 8.0E-7 | ||
| ProSiteProfiles | 119 | 153 | 35 | 11.224 | ||
| TIGRFAM | 122 | 155 | 34 | 1.2E-7 | ||
| Gene3D | 133 | 239 | 107 | 1.3E-32 | ||
| Pfam | 150 | 181 | 32 | 1.3E-11 | ||
| ProSiteProfiles | 154 | 188 | 35 | 12.452 | ||
| TIGRFAM | 157 | 190 | 34 | 1.3E-9 | ||
| Pfam | 186 | 216 | 31 | 5.8E-11 | ||
| ProSiteProfiles | 189 | 223 | 35 | 10.797 | ||
| TIGRFAM | 191 | 224 | 34 | 1.5E-7 | ||
| PANTHER | 193 | 360 | 168 | 3.5E-94 | – | |
| ProSiteProfiles | 224 | 258 | 35 | 9.504 | ||
| Pfam | 224 | 272 | 49 | 2.4E-13 | ||
| TIGRFAM | 227 | 259 | 33 | 7.9E-4 | ||
| Gene3D | 241 | 361 | 121 | 2.4E-29 | ||
| ProSiteProfiles | 259 | 293 | 35 | 10.994 | ||
| TIGRFAM | 261 | 294 | 34 | 3.9E-4 | ||
| Pfam | 294 | 340 | 47 | 1.2E-10 | ||
| ProSiteProfiles | 294 | 328 | 35 | 13.428 | ||
| TIGRFAM | 297 | 330 | 34 | 5.5E-9 | ||
| ProSiteProfiles | 329 | 362 | 34 | 7.969 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0194300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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