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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0194400 |
| Transcript ID | LotjaGi2g1v0194400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G12700.1 RNA processing FACTOR; Swiss-Prot: sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial; TrEMBL-Plants: tr|K7LEI4|K7LEI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0194400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:62753522..62758850) extracted from Lotus japonicus Gifu genome v1.2.
AAATCTAATTCCCTAATAAACCTCCTAAACACTACAATGTCACCGTCGCTTGCCTTGCGAAGCCGCAGAGGCTGAAATCT CCGCCACCGACTCACCGTCGTCATCGACACTCAGAAGCTCAGAACTGTATCCTCATCCTCTGCACTACAATGTCATCGTC ATTGTTTCGGTTAAAGAGGTTTTCCTTCAACCCCTCTTTCCTTCTTCCCTCTCCGCCGCGCCGTTTCTCTCACAAGCCTG ACGACGCCGTTTCCTCTTTCCTTCGCATGCTCAGTAAGAACCCTCCCCCTCCCATCATCAAATTCAACAAGATTTTAGCT TCCCTTGCAAAGAAGAAGCAGTATTCCAATGTAATTTCACTTTCTCAACAAATGGAATTCAGTGAAATTGCTTCTGATGT TGTTAACTTGAACACCTTGATCAATTGTTACTGCCATTTGGGTCGAATCAGTTTCGCATTCTCTGTTTTAGGCAAAATTC TCAAAAGGGGTTATCACCCTGGTTCCATAACGTTCACTACACTCATCAAAAGTCTATGTCTTAATGGCGAGATTCGGAAA GCGTTGAATTTTCATGATGATGTGGTAGCTAAGGGGTTTCAGTTAGACCCTGTTGGATATGGGACATTGATCAATGTGTT ATGTAAAGTGGGAGAAACAAAGGCTGCCTTGAAGTTGCTGAGACAAGTTGAAGGGAAGCCTGATTTGCTAATGTATAGTA CAATCATTGATAGCCTATGCAAAGATAAACTCGTGACGGATGCATTTGGTTTATATCATGAAATGGGTGTCGAGAGAATT TCTCCGGATCTTTTCACTTACAATGCTCTAATCGGCGGATTGTGTGTCGCGGGAAAATTTAAGAAAGCTGTTGGTTTGTT CAAGGAAATGGAATTGAAAAACAACATCAAACCAGATGTTTCTACCTTTAATATATTGGTTGATGCTTTATGTAAGAAAG GAAAGGTGAAACAAGCTAAGAATGTGTTGGCTGTGATGATAAAACAAGGTGTGGCGCCGGACTTAGTTACTTATAGTACC TTGTTGGATGGGTATTGTCTAACTAAGGACATGTACAAGGGAAAATATGTACTCAACGCTATGGGTCGAGTGGGAGTGAC TCCTAATGTTGATAGCTACAATATTGTGATTAATGGGTTCTGTAAGGTTAAATTGGTGGATGAAGCCCTGGCCCTCTTCG AAGAAATGCATCACAGAGAGCTTATTCCTAATACGGTAATATATAATTCTCTTATTGATGGTTTGTGCAAGGCCAGACGA ATCTCCTGTGCTGTTGAGCTTGTTGATGTGATGCATGATACAGGTCACCCGGCTGATTTAATCACCAACAATTCCTTATT CGATGGTTTATGCAAATACCATCTTCTTGATAAGGCAATTGCATTATTCATGAAAGTTAAAGATCACAAAATTCAGCCAA ATATACCCACCTACACAGTGATAATTGATGGACTATGCAAAGTTGGAAGGCTTAAGATTGCACAAGAGATTTTTCAGGTT CTTCTGAGCGAAGGCTACAATTTAAATGTCATGACGTATACTGTTATGATCAATGGGTATTGTAAAGAAGGTTTACTTGA TGAGGCTCAGGCCTTGCTGTCAAAAATGGAAGACAATGGTTGCATTCCTAATGCTGTGAATTTTCAAACAATAATTTGTG CTCTCTTTGAAAAAAATGAGAATGATAAGGCAGAGAGACTTTTTCGTGAAATGATTGCTAGAGATCTATTGTAAGATTGA TTTGCTATTCTTTTAAATACACATTTTGAGATAATGTAGATAGCAACTTGATTATCACACTTGAAACCATCAAATTCATT TCAGATAGAATGCAGGTAGTGACAAGAAAAATGACAGATTTAAAAACTTCACAATTTAATCTCTATCCAAATAAGAATTT CTAGGCATTTTATTTATGCTTGGAAACGAATCTGTTTATGAACTGAAGTCTGATACGTGTATGAGCATACTTGTTATTAT CTATTAGCTTTCATAGTACATGTTTAACTATTGTCTTATTATCTATTAGATTTCATAGTTACCATGTAGTGGCTGCATTG TGGTGGAGTGGTGCAGAGAAGGCCTCTGCCACTTCGAGAAGCCAATGAAATGTCTGCCACCCTTAATCTTACCTGTTCCT ATTTTTTTAAAGGACTTTTTGATATCCCAGGTTTGTTGCATTATTTGTTGAAGAGACTTATCACTCATAGCTTGTGTAGA AGATTCCCTGTAGTTCACCCCTTTTTTTAACTCTGTATTGGCAAATTCTTAGATATCAAACACCTGTTTTTCTAGCTTCT TGCTGTGTTTCAGGTTTCAGCCTCTGCATTCCCCATTCTCAGCCCCCTTTTCTTCATTTTCAAGGCAAACCTGCTTCTAT TGCTCAGCATTTCCAGTTTAACTTGTGTACTTTTTGATTTTTGAATTCTAATTTTTTTTTCTTTCTTATTCTCATTATTT TAAGGCAAGTGAATTGCCATTCTGATAGGATAATATCCCATCCCTAACATGCTGTTGTCGGGGGTGTGCGGACAAGGGAA AGACCCCTGGAATACAATTTGGTGTTCAGGTTAGAGAACTTTGGTTGATTTTTTTTATTGCTAGTATTCAATTAATGTGC TTAGTACTATGCATGAAGGTAGAAATATGTAATTTTGTGATCTTTAATACTGTGAGTCATGGAACTAATGATATATTGTT TATAAATTAATCTTTAATGGAAAGTGTATTAAGATGTTAATGATTAAAAAGCCCTTGATCTATTGTTAAGTGTTATGTGA CTTGAAGTTGCGCACTCTAAGCTCTTGCATGTGAATGGAATTCTCAATGCTCTGTTAGTGACTTAGTGTAAGTTAATCTT TGAGGGGCTGTAATAACAGTTTTATAACTCTTTTACATGGTGATGTGATGAGGTAAATAGGGGAAGGACTTGAACTCATG TTGTCCAAAAAAGTTTGATAGCCAAACTACTTGAGTTAAGCTTAAAATTTCGGAGTTATTGGAATAAAAATCTTGTTTTG ATTATGTTAACATGTGGTGCGATCATTGTTTCTGTTTTAGCCTTAAATTTATGATCATACGTAAGATTAAAGTTGTAGTT ACTAGTTCTTTTCTAGTTTGTGTTTAGAAGAAAAATTGCTAAAGAATTTAGTAATTTTATGTTGTAATAGTTATATAAAT TATAGGACTGAATACTGTTCATTTCTCTTTGACATCATATGTAGTATTAAGATTTAAGTTTGTTGATGTGCATGATTACA TGTCGCATGATGATATACTTAATTTGGTAAAATTTTATTGTGATTCAGACTATGAAATTACATATTTTTGAAACTCTGTT CAATATCTGGCTTGTCATTGGTTGAATTTTGATATTAGAAAACTGATGTGGAGATTTAATTTTGTCTATAATTATGCTAA TTTCACGTAGAATGTTAAATCACATGTTAGATCCTTATGGTGTGTTTGCGATTTGAGTTTTGGAGGGGAAGGGGGAGACT TATGAGAAGCTCTCCCCTTATTTTTGAGAGATTTAAAAAAGGTGGGGAAGGGTTTGCGGAAATTTTGAAAACCCTTCAAG ACCCTCCTTTAGTTGTTTTGCGGAGTTCCCTCAAATTGCGAGGTTTAGAGAAATTTGGAACTTGCAAACAAAGGAAGTGC TTACCCTCCCCCCCCCCCCCCACCTCTCTTCCCGCTCACTTGCCCTCCCTTCCTTTACCCTCGAAGCCTGTCCCTTCCCT GCTCTAAAAACTCACAAACACGCTTAGGAAATTAATAAATGGAGTGTTCAAAGATTTTTTTTGATAGGCAAATGTTAGTT GTTAGAAATGTTAGTAAATTAGTCCCTCCTCCGGGTTCGAACCCGGGACCCTTCACCCTCATCCCACCCAACCCTTATGT CCCTAGCTCTTACCACTTGAGCTTAATTTTTTAAATGTGTACTTGAAACAAGTTATTAGTCAGATTTAGTCCCAATCATT CTCCCCTTGTTTGGGAGTTTTTTTATTAGTGGGGAAGGATTTGGGGAATTTATGGAAACCCTCCAAGACTCCTATAGTTA TTTTGTGGAGTTTCCCTAACTTGGAGGGTTTTGTGAAATTTTTAACTTGCAAATAAGGGGAGTGCTTGCCCCCCTTTCCC TTCTCTTCCCCTCCCCTTCTATTCCTCTCAAAGCATTCCCTTCCTCTCCCTAAAAAATCACACAATTTAGTAACTCCCAT TATTTTCTCAAGTTCTTAAGTGAGTGGACTACTTGTAACTTGTAAGAGTGCAATACCATAATAAATTTTAGATCAAATCT AGTAGTAGTAACTCTTTCTTATATTGTTAAATCATATATTTTAATATACATTACTTATGAATATGGACCATCCAAGACAC ATCAGTACGTACTCATCTATATTTAACCTTATGACCATCCCTAACTTCTACCACATGACATAAGGGTAGGGGAGTGCTTG CCCCCCTTTCCCTTCTCTTCCCCTCCCCTTCTATTCCTCTCAAAGCATTCCCTTCCTCTCCCTAAAAAATCACACAATTT AGTAACTCCCATTATTTTCTCAAGTTCTTAAGTGAGTGGACTACTTGTAAGAGTGCAATACCATAATAAATTTTAGATCA AATCTAGTAGTAGTAACTCTTTCTTATATTGTTAAATCATATATTTTAATATACATTACTTATGAATATGGACCATCCAA GACACATCAGTACGTACTCATCTATATTTAACCTTATGACCATCCCTAACTTCTACCACATGACATAAGGAGTGTCCTTA ATGGGTAATTGCACCTTACTCACCACCTCCTGAGAAATTAAATTGTGAGTAGCTCCACAATCTATCAAAACAATAACTCT TTGAGGTGGTTGAACATGTGTTTTGGCATTTGCATTATAAAAGCAGTTTCATATTTAAAACAGACCTGATATGAAATCCA ATTGGACAACAAAATACTGCAAAATATCATTTGCTTGAATTTCTCATGTACCAGGTGGTTGGCACTACTATATTTAAGCC CTGCAACATTGATATGGAAAATTTAATATTTGACCAGGACAGAAGCATTGCCACACAGGCTAATTACTACACTTTTGAAG GCAGGAAATGAATCAAGTGTGGATCGTCTAATGAAGCAGATTAGAATTTTTTTGTCTGGTATTGTTGCTGATGAGTTCAA AATTGTTGTTGTTAAAGAAATACGATCATTGTGCCTGAAGTTCCCTTTAATAAGTCATGTATTTGAGCATGATAGATTTC TTACTGTTAGTAAAATATTGGATATCTGAGGTTGAATGAGTAAAATAAC
CDS sequence (LotjaGi2g1v0194400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATCGTCATTGTTTCGGTTAAAGAGGTTTTCCTTCAACCCCTCTTTCCTTCTTCCCTCTCCGCCGCGCCGTTTCTC TCACAAGCCTGACGACGCCGTTTCCTCTTTCCTTCGCATGCTCAGTAAGAACCCTCCCCCTCCCATCATCAAATTCAACA AGATTTTAGCTTCCCTTGCAAAGAAGAAGCAGTATTCCAATGTAATTTCACTTTCTCAACAAATGGAATTCAGTGAAATT GCTTCTGATGTTGTTAACTTGAACACCTTGATCAATTGTTACTGCCATTTGGGTCGAATCAGTTTCGCATTCTCTGTTTT AGGCAAAATTCTCAAAAGGGGTTATCACCCTGGTTCCATAACGTTCACTACACTCATCAAAAGTCTATGTCTTAATGGCG AGATTCGGAAAGCGTTGAATTTTCATGATGATGTGGTAGCTAAGGGGTTTCAGTTAGACCCTGTTGGATATGGGACATTG ATCAATGTGTTATGTAAAGTGGGAGAAACAAAGGCTGCCTTGAAGTTGCTGAGACAAGTTGAAGGGAAGCCTGATTTGCT AATGTATAGTACAATCATTGATAGCCTATGCAAAGATAAACTCGTGACGGATGCATTTGGTTTATATCATGAAATGGGTG TCGAGAGAATTTCTCCGGATCTTTTCACTTACAATGCTCTAATCGGCGGATTGTGTGTCGCGGGAAAATTTAAGAAAGCT GTTGGTTTGTTCAAGGAAATGGAATTGAAAAACAACATCAAACCAGATGTTTCTACCTTTAATATATTGGTTGATGCTTT ATGTAAGAAAGGAAAGGTGAAACAAGCTAAGAATGTGTTGGCTGTGATGATAAAACAAGGTGTGGCGCCGGACTTAGTTA CTTATAGTACCTTGTTGGATGGGTATTGTCTAACTAAGGACATGTACAAGGGAAAATATGTACTCAACGCTATGGGTCGA GTGGGAGTGACTCCTAATGTTGATAGCTACAATATTGTGATTAATGGGTTCTGTAAGGTTAAATTGGTGGATGAAGCCCT GGCCCTCTTCGAAGAAATGCATCACAGAGAGCTTATTCCTAATACGGTAATATATAATTCTCTTATTGATGGTTTGTGCA AGGCCAGACGAATCTCCTGTGCTGTTGAGCTTGTTGATGTGATGCATGATACAGGTCACCCGGCTGATTTAATCACCAAC AATTCCTTATTCGATGGTTTATGCAAATACCATCTTCTTGATAAGGCAATTGCATTATTCATGAAAGTTAAAGATCACAA AATTCAGCCAAATATACCCACCTACACAGTGATAATTGATGGACTATGCAAAGTTGGAAGGCTTAAGATTGCACAAGAGA TTTTTCAGGTTCTTCTGAGCGAAGGCTACAATTTAAATGTCATGACGTATACTGTTATGATCAATGGGTATTGTAAAGAA GGTTTACTTGATGAGGCTCAGGCCTTGCTGTCAAAAATGGAAGACAATGGTTGCATTCCTAATGCTGTGAATTTTCAAAC AATAATTTGTGCTCTCTTTGAAAAAAATGAGAATGATAAGGCAGAGAGACTTTTTCGTGAAATGATTGCTAGAGATCTAT TGTAA
Protein sequence (LotjaGi2g1v0194400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSLFRLKRFSFNPSFLLPSPPRRFSHKPDDAVSSFLRMLSKNPPPPIIKFNKILASLAKKKQYSNVISLSQQMEFSEI ASDVVNLNTLINCYCHLGRISFAFSVLGKILKRGYHPGSITFTTLIKSLCLNGEIRKALNFHDDVVAKGFQLDPVGYGTL INVLCKVGETKAALKLLRQVEGKPDLLMYSTIIDSLCKDKLVTDAFGLYHEMGVERISPDLFTYNALIGGLCVAGKFKKA VGLFKEMELKNNIKPDVSTFNILVDALCKKGKVKQAKNVLAVMIKQGVAPDLVTYSTLLDGYCLTKDMYKGKYVLNAMGR VGVTPNVDSYNIVINGFCKVKLVDEALALFEEMHHRELIPNTVIYNSLIDGLCKARRISCAVELVDVMHDTGHPADLITN NSLFDGLCKYHLLDKAIALFMKVKDHKIQPNIPTYTVIIDGLCKVGRLKIAQEIFQVLLSEGYNLNVMTYTVMINGYCKE GLLDEAQALLSKMEDNGCIPNAVNFQTIICALFEKNENDKAERLFREMIARDLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 27 | 180 | 154 | 1.7E-31 | ||
| SUPERFAMILY | 29 | 316 | 288 | 5.49E-5 | – | |
| PANTHER | 32 | 179 | 148 | 1.4E-120 | – | |
| PANTHER | 32 | 179 | 148 | 1.4E-120 | – | |
| ProSiteProfiles | 48 | 82 | 35 | 5.831 | ||
| Pfam | 83 | 130 | 48 | 1.5E-10 | ||
| ProSiteProfiles | 83 | 117 | 35 | 10.874 | ||
| TIGRFAM | 88 | 117 | 30 | 1.1E-5 | ||
| ProSiteProfiles | 118 | 152 | 35 | 9.525 | ||
| TIGRFAM | 120 | 153 | 34 | 3.1E-5 | ||
| PANTHER | 124 | 284 | 161 | 1.4E-120 | – | |
| PANTHER | 124 | 284 | 161 | 1.4E-120 | – | |
| Pfam | 148 | 179 | 32 | 7.6E-6 | ||
| ProSiteProfiles | 153 | 183 | 31 | 8.462 | ||
| Gene3D | 181 | 247 | 67 | 6.7E-19 | ||
| Pfam | 183 | 212 | 30 | 6.2E-7 | ||
| ProSiteProfiles | 185 | 219 | 35 | 9.975 | ||
| TIGRFAM | 188 | 220 | 33 | 1.1E-6 | ||
| Pfam | 219 | 269 | 51 | 9.9E-17 | ||
| ProSiteProfiles | 220 | 254 | 35 | 11.038 | ||
| TIGRFAM | 222 | 257 | 36 | 1.5E-9 | ||
| Gene3D | 248 | 338 | 91 | 2.4E-28 | ||
| ProSiteProfiles | 256 | 290 | 35 | 12.573 | ||
| TIGRFAM | 259 | 291 | 33 | 3.7E-7 | ||
| PANTHER | 272 | 409 | 138 | 1.4E-120 | – | |
| PANTHER | 272 | 409 | 138 | 1.4E-120 | – | |
| Pfam | 287 | 304 | 18 | 2.1E-5 | ||
| ProSiteProfiles | 291 | 325 | 35 | 10.128 | ||
| TIGRFAM | 293 | 327 | 35 | 2.9E-5 | ||
| Pfam | 322 | 353 | 32 | 9.0E-12 | ||
| ProSiteProfiles | 326 | 360 | 35 | 12.595 | ||
| TIGRFAM | 329 | 362 | 34 | 6.5E-10 | ||
| Gene3D | 339 | 459 | 121 | 4.8E-32 | ||
| Pfam | 360 | 409 | 50 | 4.5E-12 | ||
| ProSiteProfiles | 361 | 395 | 35 | 10.797 | ||
| TIGRFAM | 363 | 396 | 34 | 2.5E-7 | ||
| PANTHER | 392 | 532 | 141 | 1.4E-120 | – | |
| PANTHER | 392 | 532 | 141 | 1.4E-120 | – | |
| ProSiteProfiles | 396 | 430 | 35 | 9.767 | ||
| TIGRFAM | 399 | 432 | 34 | 4.7E-4 | ||
| Pfam | 428 | 455 | 28 | 8.0E-8 | ||
| ProSiteProfiles | 431 | 465 | 35 | 10.479 | ||
| Gene3D | 460 | 531 | 72 | 2.4E-18 | ||
| Pfam | 462 | 494 | 33 | 1.9E-12 | ||
| ProSiteProfiles | 466 | 500 | 35 | 14.009 | ||
| TIGRFAM | 469 | 502 | 34 | 2.3E-9 | ||
| Pfam | 496 | 528 | 33 | 1.8E-6 | ||
| ProSiteProfiles | 501 | 534 | 34 | 8.594 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0194400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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