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LotjaGi2g1v0195700.1

Overview

Field Value
Gene ID LotjaGi2g1v0195700
Transcript ID LotjaGi2g1v0195700.1
Lotus japonicus genome version Gifu v1.2
Description Pentatricopeptide repeat-containing protein family; TAIR: AT3G22470.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial; TrEMBL-Plants: tr|A0A0R0I9Q5|A0A0R0I9Q5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0195700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:62982716..62990007) extracted from Lotus japonicus Gifu genome v1.2.

TAATATTGTATCGGTCAGGGTCCCCCGTGAGCCGGTTTTCCAACTCAGTGAAACGAACCTTCCTGCCGTCTACTGTGTAG CGCCGTCGCGCCGTCACAGACTCGCCGCGCCACGCCACGCCACGCCACGCCTCTCTTTGTTCGGAATCGCAGACGCAACC TCCATCTTCGTCAAGGTACACACTGACTTCATTGCTGTGAATTTTCTAACAATCTGTTTTGTGGTGATGTTTTGAACTTA TCTGTGAGCTTCCATAGTAGTAAATCCTTGATTGTTATTTTTCTGATTAAGTGTTTCTGTGATTGTAATGATTTTGAATT TGCAGCACTGTATGGAGTGACTTGTTAATTTGTTAGCTTGTGACTGACTAGTTCGCTCAGTGACCTATTGATCCTATGTG TTTCTCATATTGATCACTGATTCCCCTTGTGTGACATTGCTTTCGACTCACGAATTCGACACCGTTGGTTGGTTAAGCTG AATTAAGCGTGTGAGAAGAAGTACAAGTGGGCACAGAAAGATGAATATATCTTTCATTGATGAATATTATGAATACAATC TCTAATTCTTATACTAGAGTAGTACAATAGGAATGAGAAATAGAAAGTAACAGAAGCTAGTTATTAGGAATAACTCACTT TAGCAAACTAACTACTATTACATAACAGTCCCCTTAGGATAGCTCAAGTGGTAGGAGCTGGGGGACATATGGGTAGGGTA GGGGGAGGTCCAGGGATCGATTCCTGGCGGGTGCAATTTATCTTTCCGATGTACCAAAACAAAAACTACTATTACATAAC AACCTCATACTTTATCACACCCCCCTGCAAGCTCATGGAGGTTTAACTTCTTGAGGATCTCGAACCTTGAGCTTGGACTT TAGCTCCAAAAATCTTGTAGGAGAAAGAGCCTTAGTGAGAACATCAGCTACTTCAGAACAGGCTGGAACATGTTGATCAG TAATAGACTTGTTCAGAACATTTTTCAGAAAAAGAAGAGATCCAATTCTATATGCTTTGTGCGACGAGCATGCAAAACAG GATTATGAAAATGTGACACTGTGCTGAGATTATCACAAAATATAGAGGGAGTGGTGTGAAGAATGTGTGGCTCTTGAAGA AGTATTTACAGCCAAAGTATTTCTGCTGTAGCAACAACAGCTACACTACTATACTCTGCTTCGGTGAAGACCATGCAACA ACTATATGTTTTCTAGAGTACCGTGATAGCAAATTAGGCCCAAGATAGCAAGAGGTGAACCTTCTATTATCCGGATCAAG GGCTATTATCCGCTGCTGGTCTAAGATGAATGCCATGGGAAAGATTCCCTTTCAAGTACCTGAGAATTCGTTTTACTGAT TTCCAATGTGAATCCATAGGCTAGAGAACTGGGACACTGTTGACTGCATAACTAAGTTCAGGTCTTGTGATAGTTTCATG TTGAAGAGCTTCAACAATGGAGTGATAATTAGAAGGGTCATCAACATGATCTCTCAATATCTGTTTGTATGGACTTGATT TTAGTGTTTAGGTGAAGTTCAGCTGAGGCTTTGAATGTTTAAAAGCTGAAAGAGCCTCTGATTTTGATTTAAGAAGATAG AGCCATGTATGATGAAGAGGGCTGTGAGACAAAGTTGGCAAAACCATGATGTTGAACAACTTGTGTTTATGTGCTATTTC ATTATATAATTCATGTCATAAATAAATGTAATTTTTAATTTTAATATTTTTTTTAAATTATTTATGATATCATTGCTTAG ATGCTCCATTTACAAATATATGTTCCCTTTTGTTATTTTCCATTATATTTTTTGTCTTTCACCTTACATACCTTAGCATG TTTTATTTCCTATGATTGATTATTGTTTCACTCTTGCTTATGTTATTTGCAGATTGCTCACCTAATTGCCACAATGCAAT AAATTAATAGAAATAGGGAAAAACTGTGTGAGAGACTGCATGTTTGGAGCAAGTGTTGAATGGAAGCATTGAATAAAGAC AAACTCCTTCAGCTTTGGAGAGAAGGTTGTGATGTTGTGCACTGCTACAACAATAAGATTAAGGTATGCCATCCCAAAAA TTTGTGTCTTTCTTACTCCATCAATTCAGAAGCTCTTTTCTCATTCCTCACCACAGAAAGCAAAAATAATATCTGGAATT GATGATGCTGTCACCTTATTCACTCGCTTGATTACTATGCATCCACTTCCATGTGTTGTAGAATTTAACATGATTTTAGG GTCAATAGCGAAGATGAAGCATTATTCAACTGCTATTTCACTTTTGAAGCAAATGGGGTTGAGAGGAATCACCCCTTCTA TAGTCACTTTGGGTATCTTGATAAACTGTTACTGCCACTTGGGTGAGATGGGTTTTGCTTTTTCTGTACTGGGCATGGTT CTCAAGAGGGGTTATCAACTCAATACCATAACACTGACAACACTCATGAAAGGGCTTTGTATCAATGGTGAGGTTAGGAA AGCGATGGACTTCCATGACAGTGTGGTAGCCCAAGGATTTCTGTTGGATGAAGTTAGTTATGGGACCTTGATCAATGGCT TGTGTAAAATAGGACAAACAAATGATGCGTTTCAATTGCTGCAAAAGATGGAAGGACAAGTGGTTAAGCCTAACATAGTA ATCTATAACATGATTATTGACAGTTTATGCAAAGATGGTCGTGTAATGAAGGCACGAGATTTATGTTCTGAAATTGTTGT ACAGGGAATAGATCCTGATGTTTTTACTTACGCGTCTCTAATTCATGGATTTTGCAGCATGGGTCAATGTGAAGAAGTTA CTAAATTGCACTGTGAAATGGCTGATAAAAACATCGAGCCAAATGTTTATACCTTCAATATATGGATTGATGCGTTATGT AAAAAAGGAATGCTCATAGAAGCCCAGGGTATTTGTAATTTGATGATTGAAAAAGGCCAGCAACCTGATATTGTTACTTT CAACACTTTAATGAGCGGATATTGCTTACACAATAATGTGGGTGAGGCCAGAAAATTATTTGATACAGTTGATGAATGGG GTATTGAGCTGGATGTTTGGAGTTATAATGTCTTGATTATTGGGTATTGCAAGAGTAGGAGGATTGACGAAGCTCTGAGC CTCTTCAATGAAATGCGTTGTACAAATTTGGTTCCTAATGTTGTAACTTACAGTTCTCTAATTGATGGTCTGTGCAAATC TGGGAGAATCTCTTATGCGTGTGAACTCTTCAATGCAATTTGTGATAGTGGTCCACCCCCTAATGTTATCACTTACAATA TCTTGATAGATGCTTTTTGCAAGATCCAACAAACTGACAAGGCATTCACCTTATTTGACCAAATGCTTGAAAGGGGATTG ACTCCTAATGTTTCAAGTTATAACATCTTAATTAATGGGTTTTGCAAGTGTAAGAAGATTGATGAAGCCGTGAACCTCTT CAGAGAAATGAATTGCAAAAATTTGGTCCCTGATTCTATAACTTATAACTCTCTTATTGAAGGGTTTTGTAAATCTGGGA GAATCTCTCAGTCATTGGAGCTTTTCAGTGGGATGCATATTGGCGGTCAACCAGTTAATGTTGTTACGTACAATGTCTTG TTAGATGCTTTGTGCAAGATACAACTTGTTGGCTAGGCATTATTTAATCTAATGTTCGAAAGGGGATTGGCTTCTGATGT TTTTGGTCATAGCGTCTTGATTCATGAATTTTGCAAAGGTAAAAGGATGAATGAAACCATGAATCTCTTCAAAGATCTTT ACTGCTACAATTTGATTCTTGATTCATGATGGTATGGTGTAACTCACAGCTCTCTTATTTATGCAGGCTTATGCAAATCT CGGAGAATTTCATATTGCATGAGAGCTAACTAATGTGATAATATAAATGATAATGCACAAAACCACCCGTGACTTACAAT ATATTGTTAGATGATTTTTGCCAAGGCCAGCATCTTGATAAGGTGGATTCCCTTAATTCTGTGCAATCTCAGAAAGATAT TTGTTTTGATTGGTTCCCAATCACTAATTGATGGTTTTTACTTTTTACAGAGGTCAAAGATCAAATTACAACAGAATTTT CACCATCTTTTGATTGAAGTTTCTCTCTGAATGTTGTCGCATACAGCACCATTACCAATGGAGACCCCAAGAAGGCTTAT TCCGGAAATAAAAAAAATAATGTGGTAATGCAGAGGAACTGCTTCAAGGAATGACTGCTAATTTGCTGGAGGTTTGAACA TATAGTAAAACCTGGTCAGATACCTTGATTACACTCGTATATATACTTATTATACTAATGTTGTGTATGTCCTAATATTT GGCTCAAAAAAGTTGCAAAACACAAGGGGATACTTGGACAAGTTGTGATAAAAGGTTCATATATTTACTAAACTTATTTT AACATTATGCCTTGCCATGGATTCATTTTGTTGTCTTTATAGGATTATTATCTATCTTCCTTGGCAAATGTAATTCTGAT GTGCTGCTTATGAAGTGTTTATTGGATCTATATAATAGCTGAAAGATTGAGTTTTTAATACTAGTAAATTTATGAGCCTT GTATAATACAATGAAAAGGTAGCAACTGACACTGACATTAGAGTTAAATACAATTGTTGCCTGAAAATTGTAACTTTTAT TTCTTTGGTCCCTGGAAATGTCTGTGTGCACAAATTAGTCCCTGAGTGTGTCAACTTGCCTGTTTGGATACGGGCTTTTT GGAGTGCTTATCTACTAGAAAATGCACTAAATAAACTCTAATAAGTGTTCTTTGCTTTGCATCCAAACAGGCTCTTATTC TCAAATCCATCCTTCTATCAAGTAGGCAACATGTTTCACTTATATAGACATCCATATAGGCAACTTATTTGGCACCCAAT GTTACCGATGTGTAGTTAATGTGTTATATCACCTTTTTCATTATACATCACTAACTGTAGTTAATGGGACCATTTTGTGT AGATGGTCGGATGGATGAATTTGTAATGAAGTTGACGCATTCTGGGACTAATATGTACACACGGGGACTTTCTTATGAAC CACTCATTCATCTTAACATCCTTATCAGTTTATTTTCTTATTGACTTCTTACCACTAGACATTTAGTCTCGTACATTATT GCAAATTTTATAGTTATGTAGTAGAATTTCTCTTTGAAGTTTTACGGTACTTCTCTATGGCCAATCACACCTGAAACTTT TATCTATTTCGCACATATTAGAGAATACCAAGTGTGACCCAAAGAAATCTCACATTGTATAAATTAGCAAATGTATAATA GTACATATGTTGAAGGGCACGCACGGCTTAAGGTTCTGTGGCCATGTGGATGTAACTTAAACATAACATGGTATTAGAGC CGAACAGAAGTCTAACACCTGATGGCGTTGCGCTGAGCTCAAGCCCAATATAAAGCAAGTCGTAAGGCCTCTGGGACTCA GATGAAAGAGCACAAGTCCAACGATCTCTGATGTTCCCGCTGGAGTACAAAGCACAAACAAAGTAGAGAAGCAAGTCGTA AAGTCCTCTGAGACTCGAACAAATGAGTACAAGCCCAAGCAAAGACGGAAGAAAAAAAATGGAGTATCATTTGAAAGGGG AGTATTAGAGAATACCAAGTGTGAATCAAAGAAGTCTCACATTTTAGCTAGCAAAGATTTACATCGCTGAGATTGTTCGT CTGCATGGTGTGCTGTCTAGCATCGTGTCGGACAGAGACCCGAGGTTTACTTCACGTTTATGGGGAGCTCTACAGCAAGC TTTGAGAACCAAGTTGAGGTTGAGTTTCGCGTATCATCCACAGACGGATGGGCAAACCGAGAGGACTATTCAATCCTTGG AGGATTTGCTACGGGCTTGTGTGCTAGATCATCAGGGAAGCTGGGATGAGTTGTTGCCGCTGATTGAGTTCACCTACAAC AACAGTTTTCATGCGAGCATAGGGATGACACCTTACGAAGCTTTGTATGGTCGGAGGTGTCGTACGCCCTTGTGCTGGCA TCAAGACGATGAGAATCTGGTCATTGGACCAGAGTTGGTTCAGCAAACTACAAAAGAGGTGAAGCGAATCCAGGAAAAGA TGAGGATCTCACAGAGTCGTCAGAAGAGTTATGCTGACAACAGGAGGAAGGAGCTGGAATTTCAAGCTGGAGATCATGTC TTCTTGCGGGTTACCTCGATGACAGGTGTCGGAAGGGCGATCAAGTCCAAGAAGCTTACTCCAAAGTTCATCGGACTGTA CCAGATTACGGAACGTGTTGGGCTAGTGGCGTATAGGATTGCGTTGCCGCCTTTCCTATCCAATATTCATGATGTACTTC ATGTGTCGCAGTTGCGAAAGTACATGGCTGATGATTCTCATGTTCTCGAACCTGATGACATTCAGCTAAAGGATGACCTG ACGATGGTGATGCCGCCCATCAAGATCATCGACAAGAGTATCAAACGCTTAAGAAACAAGAAAGTGTCCTTGGTGAAAGT GATTTGGAATCAAGTGACGGGTGATGCTACCTGGGAGCTTGAGAGTAAGATGCGGGAGTCACATCCCGAGTTGTTTGTAG AGCCCTAGTTTCGAGGACGAAACTATTTTTAAGGAAGGTGGTATTGTAAGACCCTAACCTTTACTATGTAATGTTAAGTG ATTTATTCAATAAAAATGAAGTTTGTAGTGAAGTTTGACTTTATTGCTAATCTGCCTGTGACCTTGTATAAATTTTTGAG AGGTCTTAACGACCTTTTCTGGAGAATCTTCCTGAGAGTTGTAGCTCTCTGAGTTAGCTAAATTCTCCAATTGATTTCGT GTCAATCCGATATCTGTAGCTCAAGATAATTGAATTTTAGTGAGCGAATGTCTGGCTGAACAGTGCCAGCGATTTTTGTT GATATGATAACTTTTAATTTCAAATTTACCTTTGATTTTTAGAGAAAGGGGGAGGGTTTTAATTGGGTTTCAGGTCTGAT TACTTGGAACTAGTGGGCCAAGAGAGTTGACTTGGATCGAGCTTGAAAGAAAAAGAAAAACCCTAGCCCACATGCTAGTG TGGCCGCGAGTTTGATAGGGGTAGGGGGGGAAATCCTAATTTTCTCTTCATTCTGAATTAGAAGGTCCCATACACCACTC TTACGTGAAAAACTTCAGAAGAAAGAAAGAGAGAAAGAGAGAAACGGAGAGAGAAGAAAGAGGAACCACCGCCACTTTCA ACCCTAGCGCCGACCACCACCGTGCGTGCGAGAGAGAGTGTGCGAGCGAGAGGGAGGGAGGAGATCGAGCGAGCAGAGAG AGAGAGAGGGGC 

CDS sequence (LotjaGi2g1v0195700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTGTGCACTGCTACAACAATAAGATTAAGGTATGCCATCCCAAAAATTTGTGTCTTTCTTACTCCATCAATTCAGAA GCTCTTTTCTCATTCCTCACCACAGAAAGCAAAAATAATATCTGGAATTGATGATGCTGTCACCTTATTCACTCGCTTGA TTACTATGCATCCACTTCCATGTGTTGTAGAATTTAACATGATTTTAGGGTCAATAGCGAAGATGAAGCATTATTCAACT GCTATTTCACTTTTGAAGCAAATGGGGTTGAGAGGAATCACCCCTTCTATAGTCACTTTGGGTATCTTGATAAACTGTTA CTGCCACTTGGGTGAGATGGGTTTTGCTTTTTCTGTACTGGGCATGGTTCTCAAGAGGGGTTATCAACTCAATACCATAA CACTGACAACACTCATGAAAGGGCTTTGTATCAATGGTGAGGTTAGGAAAGCGATGGACTTCCATGACAGTGTGGTAGCC CAAGGATTTCTGTTGGATGAAGTTAGTTATGGGACCTTGATCAATGGCTTGTGTAAAATAGGACAAACAAATGATGCGTT TCAATTGCTGCAAAAGATGGAAGGACAAGTGGTTAAGCCTAACATAGTAATCTATAACATGATTATTGACAGTTTATGCA AAGATGGTCGTGTAATGAAGGCACGAGATTTATGTTCTGAAATTGTTGTACAGGGAATAGATCCTGATGTTTTTACTTAC GCGTCTCTAATTCATGGATTTTGCAGCATGGGTCAATGTGAAGAAGTTACTAAATTGCACTGTGAAATGGCTGATAAAAA CATCGAGCCAAATGTTTATACCTTCAATATATGGATTGATGCGTTATGTAAAAAAGGAATGCTCATAGAAGCCCAGGGTA TTTGTAATTTGATGATTGAAAAAGGCCAGCAACCTGATATTGTTACTTTCAACACTTTAATGAGCGGATATTGCTTACAC AATAATGTGGGTGAGGCCAGAAAATTATTTGATACAGTTGATGAATGGGGTATTGAGCTGGATGTTTGGAGTTATAATGT CTTGATTATTGGGTATTGCAAGAGTAGGAGGATTGACGAAGCTCTGAGCCTCTTCAATGAAATGCGTTGTACAAATTTGG TTCCTAATGTTGTAACTTACAGTTCTCTAATTGATGGTCTGTGCAAATCTGGGAGAATCTCTTATGCGTGTGAACTCTTC AATGCAATTTGTGATAGTGGTCCACCCCCTAATGTTATCACTTACAATATCTTGATAGATGCTTTTTGCAAGATCCAACA AACTGACAAGGCATTCACCTTATTTGACCAAATGCTTGAAAGGGGATTGACTCCTAATGTTTCAAGTTATAACATCTTAA TTAATGGGTTTTGCAAGTGTAAGAAGATTGATGAAGCCGTGAACCTCTTCAGAGAAATGAATTGCAAAAATTTGGTCCCT GATTCTATAACTTATAACTCTCTTATTGAAGGGTTTTGTAAATCTGGGAGAATCTCTCAGTCATTGGAGCTTTTCAGTGG GATGCATATTGGCGGTCAACCAGTTAATGTTGTTACGTACAATGTCTTGTTAGATGCTTTGTGCAAGATACAACTTGTTG GCTAG 

Protein sequence (LotjaGi2g1v0195700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLCTATTIRLRYAIPKICVFLTPSIQKLFSHSSPQKAKIISGIDDAVTLFTRLITMHPLPCVVEFNMILGSIAKMKHYST AISLLKQMGLRGITPSIVTLGILINCYCHLGEMGFAFSVLGMVLKRGYQLNTITLTTLMKGLCINGEVRKAMDFHDSVVA QGFLLDEVSYGTLINGLCKIGQTNDAFQLLQKMEGQVVKPNIVIYNMIIDSLCKDGRVMKARDLCSEIVVQGIDPDVFTY ASLIHGFCSMGQCEEVTKLHCEMADKNIEPNVYTFNIWIDALCKKGMLIEAQGICNLMIEKGQQPDIVTFNTLMSGYCLH NNVGEARKLFDTVDEWGIELDVWSYNVLIIGYCKSRRIDEALSLFNEMRCTNLVPNVVTYSSLIDGLCKSGRISYACELF NAICDSGPPPNVITYNILIDAFCKIQQTDKAFTLFDQMLERGLTPNVSSYNILINGFCKCKKIDEAVNLFREMNCKNLVP DSITYNSLIEGFCKSGRISQSLELFSGMHIGGQPVNVVTYNVLLDALCKIQLVG 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 41 170 130 3.7E-152
PANTHER 41 170 130 3.7E-152
Gene3D 41 195 155 1.2E-32
Pfam 60 109 50 1.3E-8
ProSiteProfiles 61 95 35 8.309
ProSiteProfiles 96 130 35 8.539
TIGRFAM 98 131 34 9.5E-4
Pfam 126 156 31 9.6E-6
ProSiteProfiles 131 165 35 9.284
TIGRFAM 133 166 34 9.9E-5
PANTHER 159 419 261 3.7E-152
PANTHER 159 419 261 3.7E-152
Pfam 162 194 33 2.7E-10
ProSiteProfiles 166 200 35 11.751
TIGRFAM 168 201 34 1.4E-7
Gene3D 196 263 68 1.3E-19
Pfam 198 227 30 2.9E-9
ProSiteProfiles 201 235 35 10.95
TIGRFAM 203 237 35 1.0E-7
Pfam 235 284 50 8.1E-16
ProSiteProfiles 236 270 35 12.2
TIGRFAM 238 272 35 1.9E-6
Gene3D 264 334 71 2.5E-20
ProSiteProfiles 271 305 35 10.907
TIGRFAM 273 306 34 2.0E-5
PANTHER 288 454 167 3.7E-152
PANTHER 288 454 167 3.7E-152
Pfam 301 331 31 3.5E-10
ProSiteProfiles 306 340 35 11.203
TIGRFAM 308 342 35 4.9E-7
SUPERFAMILY 313 494 182 3.92E-7
Gene3D 335 404 70 3.7E-23
ProSiteProfiles 341 375 35 13.285
Pfam 341 389 49 9.0E-18
TIGRFAM 344 377 34 1.1E-10
ProSiteProfiles 376 410 35 11.926
TIGRFAM 378 412 35 5.2E-7
Gene3D 405 475 71 4.2E-25
PANTHER 410 533 124 3.7E-152
PANTHER 410 533 124 3.7E-152
Pfam 410 459 50 1.1E-20
ProSiteProfiles 411 445 35 13.756
TIGRFAM 413 447 35 2.5E-11
ProSiteProfiles 446 480 35 13.461
TIGRFAM 449 482 34 9.4E-10
Gene3D 476 534 59 7.4E-15
Pfam 480 529 50 1.5E-14
ProSiteProfiles 481 515 35 11.389
TIGRFAM 483 509 27 3.6E-6
ProSiteProfiles 516 534 19 6.533

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0195700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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