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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0196200 |
| Transcript ID | LotjaGi2g1v0196200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Down syndrome critical region protein 3 like; TAIR: AT1G48550.1 Vacuolar protein sorting-associated protein 26; Swiss-Prot: sp|O35075|DSCR3_MOUSE Down syndrome critical region protein 3 homolog; TrEMBL-Plants: tr|A0A151TEM0|A0A151TEM0_CAJCA Down syndrome critical region protein 3 isogeny; Found in the gene: LotjaGi2g1v0196200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:63051457..63059566) extracted from Lotus japonicus Gifu genome v1.2.
AATAAGACATTGCAACTTGAAAACTCAGGTAGTTACTTATCGGTGGTTGCTGCCATGTCTGTTGAGCTCAAACTCTCTCG CTCCAATCGTATCTATCGCCCTTCGGTAAAACCCTAATCTCTCTCTCTCTCTCTTTGTGCATACTGGAGTGACACCCCTC AAACCATTCTCTGGTGCTTTGAATTTCCAGGAAGCTCTGGAAGGCAAAATCATCATCAAAACTCAGTCTTCAATTTCCCA CTATGGAATTCGCCTCACTCTCAAAGGTTCCGTCAACTTGCAGGTGCTTAAAATCATGTAAAGACGTCTACTTTATGCTA AAAATGATACCTTTTTGCAAAAATCTGTTCGACCCAGTTTAATTTGAACCAAAGGGTATTCAGATTGAGTTTAATCATGT TAGGTTTTGTGAGTTTGGATTTTGATTTTTTTTTTTTTTGCTGATTTTGCTGCCTTTTTTTGTTTTGTTTATGGAAGGTT CGTGGAGGATCAGCTGGAGTTGTTGAGTCATTCTATGGTGTTATTAAGCCCATCCCAATTGTGTAAGTGAACAAATTAAC TTCTCAAAATGATTGCTGTACATTCATGGGAAATTACTAATCAATCATCCATGTTTGGTCAACCAAAGATTATGCAATTT TGGAGATCCAATTTCTTCTGCTAGTGTTACAATATTCAATTTTGTCAAATTTTACCTATAGATGTCTCTAAGTAAATAAC AATGATTTCAACCATATTCAGCTGGCCTACTATGTAGTCTTTTTCCATGAGTGAAGCATAGTAGTTATTGTTATGACTTC ATGTTTTGTAGATGATTCTGCATTTTGTCATATCAATCTTAATTTCCACTTGGACTTAAACTGTTCCCCCTGCCTACCGT CCACTTGCTGTGCATGTCTTTTTACCTGCCAGCGGGCGAACTTTCATGATTGTACACTGCATAATTTAAAATACTTTTCA TGGTGAAAGTGGTAATTGTGCTTTTCACCCTCATCTTCATTCATGATGTTCTATTTGCTAACTTCGGCTCATAAGGGGAT TACTTGTGTTATAGAAAAGAAATCTGAAACTTGCCCCTTCTTGTTGTTTGTAAATGCTCTCTCTTTTACATTTGAGAAAG TTCACATGATTCTTGTTATTGGCTTGTAAACAGGAATAGGACCGTTGAGGTTAAATCTTCCGGAAAAATTGGTTCAGGTA CAACAGAGGTAGTCTCCCAAAAGTGCATGAATGACATGTAGAATTATTTGGTATTTATTGAGATCAAATCACTTTGGTGC ATGCTTGTAATACTAATACCAATTATATTCTATGCTGTCTGCTTTAAGCCATGATCGAGGTTTTAAAGACTGGTTACTTC ATAACTTTCATGAACTTTTGATTTAAAACAAATAAATACTGTTGATTTAAAAACAAGGAACTTGGTTGTTTTTTTTTTTG AAAGAAGGAACTTGGTTGTTGAAATAATGAAAAAGATTATAGAATAATTTATGACCAGAAAGATAAAATATTTCTTTTTA CCAGAGGAGTTGAAGTGAGATAGCTTTAGTCATTGGATAGAACTCAAGTTAAGCAAATAAACAGATAGCCTTAACTGGTG TATGATTATTATAGAGGATCCAGTTAGCTATGGTGAAATTACCTTCAATGCCAAGCATCCAACTGAAACATAAGCTTTTA ATTGATTCTCAATAATTGTTTCATATGTTGTATTATGTAACTTTTATGTTATGCGATTTTATCCATAATCTATGTCTTTT CTAGTCTATACCCGTCATGGTGAAAGCAATGAAATTTGCATTTGAAGGACAGAGGTTAAGCCATAATATATAACTAGTCT GTGACTAAGCATGCAAAGTATGATACCGATTTTGATACTTTTTGGACTTGTTTCGTTCTTTAGAAACTGGCCGGTTCATT CTTCTTACCTTTAGTCTGTACATTTTATGTATTGCATATTTGCATAGTTTTACATGTGTACATATTGGTTGGCTATCATC AATCATGTGGTCTAAACTCTGGGACACTTTGGATATGATTTCATAGTTTTGCTATAAATATGCAACCATGCACTAAACTA ATCGGGATCTCTGTCTCAGAGTTTTAAATAGCATATGAAAAATTGTTTCTGTATGCTATATCTAAGTTCCTTTCTAGACT CAGGCTTTACTGAATGATATTTTTATTTTTGAAATAACTATGCTTGTGGGCAAAGCAAAGATACCATTTTTAATTTCTGG TTCAACAACATATTTTCTTGTGTTCATTGTATGTTCTGAAATCTTTATGGCAGATACCATTTTCAATGAATCTTAAACAG CGGGATGAGAATTTAGAAAGATTTTATGAGACTTTCCATGGGTCAGACATTAATATCCAGGTAAAATGTTCTTAGAAAAT GCATAAATCATTTTATAAACCTATTTTTCTTCATTTTTTTCTTGTTAAGTTTTCACAAAATTTATACTGTTGGTGATGGA TAGCCTCTATAGTATTTGTTGACTGCAGATATATCTCGTGGATACTTGCATAAATCATTATCAGCAACGACGGAGTTCAT TATGGAAAGTGATAAAGGTATAAATTGTCTCTTTCTTATTCTTGATGTTTATAGATTTGTCATTGATCAAATTACCAGTA TCTCTTGTTTGTGCTTTCAGCTGATCTTCTACAAAGACCAGTTTCTCCAGAGACAGTCATCTTTTACATTACCCAGGACA CTCAGAGACATCCTCTACTTCCTGAAATAAAATCTGGTGAGTGGATTTACCTTCGAAGAGTACAAATGAAAAGAGAATTT GTGAAATTGTTTCATGCCTTAAAATCTCACAAGTTGTCACACGCATCTTCTGTGGCAATACTAACTTTGTCGTGTCACAT GTTAATAACCATCATGGTAAAATTTCATCAGTTGTGCACTTGAATATTTGAATTCTATTAAGTGCGGGCCTCTGCCCTCT AGTTTATTGTAAACATCAAAGGAAAAAGGTCATGTGGCTAATGCAAAGGCAATGTTGGATAGGTGGATTCCGGGTGACAG GAAAAATATGTACTCAGTGTTCTTTGTCTAGTCCTATTAATGGTGAGCTAACGGTAGAAGCATCTGCAGTTCCAATTCAG TCAATTGAACTTCAGTTGTTTCGTGTTGAGTCCGTTCTTTTTGGGGAGAAAATTGTTAATGAGACCTCTCTGATTCAAAC AACCCAGGCAAGTGATGCTAGATTTGTATAAGAACATGTTAATTTAAATCAAGCTTTTAATTATTTTCTTTTTTTAACAG ATAGCAGATGGAGATGTTTGCCGTAATTTGACTCTGCCTATCTATGTAATACTTCCCCGCCTTTTGACCTGTCCAACAAT CTATGCCGGGTATGTTTCCAGCTCATGATCATTCTCATCCAGTGTATTTCACAAGAGTAATGGGGTATCCAATAAATACC GCATGCACACAAGACAAGATGTGCAGAGCTTCATAAAAAAAAATACTACGACCACTCTATGATGTGTGATCTTTTATATA TGCTGCTTTTTGAGTTTGGCATTTTCCATTTCATATATATCTTCCCATGAAATACTTTATGCTTGTAAAAACTCATGGAT ATGACTCAGTTTGTTGTATATTATATATTTGTATTATTATTTTCATGCAGTCCCTTCTCAATTGAGTTCAAAGTTGCCAT TGTTATAAGCTTTCAGTCAGAGCTAGCAAAATTGCCCAGAAAGTCTGACTCCAGAACTCCCAGACTCTGGGTAGGTGCAG GTCCATTTCTCTAAATGGAATTTAGATTTAACATCTTTTATTAATCTTCACTTGGAAGGATGTTTTGGTTTTTAGCAAGC AAAGGTTGATTTCTGGTCTAACAATTTTTTCCTGAAATTTCAGCTGGCAATGGAAACATTACCGCTTGAGTTAGTTCGGT CAAAGTAAGATGATGTATGGTTTTGTCAAAATATGACTTGACTTCAAGAGGAGGATAACTATGGCTTTACCCATGCAACA TTTAGGATAGGTTTTGAGTATATTGGCTATTTGGTTTTTCATTTCCATCAACATTGGAAACATTCTGTGTCTATATTCAT GCAACATTTCAGATATTAATATTATAGAGCATTTTCCCGTTCATGATCCAGAACAACATTTAACCACTGATGACATGTTT GTATCAGCTCAAGTGTTAGATACCAGAAAATGAAGTAACAGTATATAGGAATTTAGAACAAATAGAGCTTTATATTATCA ATGGAAATGGAGAATGATTTACAGAAAAAGAGAATGGAATCCTCTTCAACTGCCCAGAGCTAGGCTCCTTAACAGAAATG CACAATGCAATCTGCTCCTCTCACTAACTTGATTCTAACAGAATGATTCCTCTCAATCCTTTCCTCACTCCTTATAGCTA ACCTGATGTCAATAGCTCTCTCTCTCTCATGACACGTCACCTTCTCCCTAACTAACTATTAGTCACCATTCTCTTCCCCC TTCTAGAATACACCTGCCATATCTTGGGACCCTTTGGGTTCTGATGGGCTAAAGGTTCAATATGGCTTTCTTGCATACCA TTGGGCCTAACAATACCCCGTCCATTTGCCTGAGCCTTGTCCTCAAGGTTAAAAGATGGAAACTGACTCTTAATGGTAAT CAGGTCTTCCCATGTAGCTTCATCCAAGCCTTGTCCCTTCCACTGAACTAAAAGCTGTTGTATCTGTTCCCCTTGTACTG TCACTGTACGCTTGGCCAAAATGGCTTCAGGTTCAATCACAACCCCCTTTTCGCCTTCTAAGTCTGGCAAATCTTCCGCC TTGTGGTAGTTGCCTACTGCCTTCTTTAGTAAGGACACATGAAAAACTGGGTGTACTCGAGAACCAGTAGGCAATTGCAA CTGATATGCTACAGCTCCAACTCTTGCGACCACCGGGTAAGGACCATAGTATCGTGCAGCAAGTTTGGCATTAATTCTTG CTACCACAGAGTTCTGACGGTGGGCCCTGAGCTTAACAAAGACCCATTCACCTATTTCAAAGCTGCGGTCACATCTCTTT TTGTCCGCAAAGTGCTTCATTCGGTCTTGAGCCCTCAAAAGGTGTTGCCTGAGTTGTCTTATTGCTTCATCACGCTCCAC AAGCTCCCTTTGCACTGCTTCAACCTTGACTTCTCCTTGTACCCAGCGAGTAATAACTGGTGGTGGTCTCCCATACACTA TTTCGAATGGTGTTTGCCCTGTGGATACATGATAACTCGTATTATACCAATACTCAGCCCAAGGAACCCAATGTGCCCAA GATTTTGGCTGATCAGCAATGAAGCACCTCAAATAGGTTTCAAGACACCTATTTACTACCTCAGTTTGTCCATCAGACTC TGGATGGTAGGCAGTGCTCATCTTTAACTTGGTTCCTTGCATTTTAAAGAGCTCCTTCCAAAAGTTACTCATGAACAAAG GATCCCTGTCACTCACAATGGATAAGGGCACACCATGAAGCCTCACCACCTCTCTCACAAATATGTCAGCTATCACCTTT GTTGTATAGGGGTGCTTGAGAGGTACAAAATTAGAGAACTTGGACAACCTGTCGACTACCACCAACACAGCTTCATAACC TTTGGATTTGGGTAATCCTGTTATGAAATCCATGGAAATATCTTCCCAAATTTGATTAAGAATTGGCAAGGGTTGCAAAA GTCCAGCTGGGGAGCTAGCCATGTATTTTTGCCTTTGGCAAATATCACATTTCTTGACAAAGTCCTGAACTGAACCCTTC ATGCCTACCCAATACACATTGGCTGCAATTCTTCTGTAAGTTCTATAAAATCCTGAATGGCCTCCTTGGGGTGTTTCATG GAATTCAGCCAATAACTCAGGGATCAAAGAAGACCCTCGAGGAATGACCAATCTCCCACCATACAATAAAATTCCTTGCT CCAAGGTGTACCCTGACTTCACTTCTTTTCCCTCCTGAATATCCTTGATAATTTGCTGTATCTCAGGATCTTGTGCAATT TCTGATAACAAATCTTGTTTACTGTCCCATCTCACACTGGTGACAATTTGTTTGAATTCCCCTGACTCATTGATTCGAGA AAGGGCATCAGCTCCCCTATTCAACTTCCCAGGCTTATAACAAATGTCAAAATCAAATCCCAAAAGCTTTGCTGCCCAGT TTTGTTGTTCTACTGTAATTATTTTTTGTTGCAACAAATCTTTGAGACTTTTCTGATCAGTGGTTACCTTGAATCTCCTT CCCAACAAATAAGGTCTCCAGTGTTGTATTACTAGAACCACTGCCATCAATTCTTTTTCATAAGCTGACTTTGTGAGATT CCTAACTCCCAGTGCCTTGCTGAAGTAAGCTATAGGCCTTTTATCTTGCATCAAAATTGCTCCCAACCCTCCTCCAGATG CATCACATTCAATTACAAATTCTTTAGCAAAATTTGGTAAAGCCAAGACTGGTGAAGTAGTCAATTTCTCCTTAAGAGCA TCAAAGGCAACTTGAGCTTGTTCATTCCACTTGAAAGCTTCTTTTTTTGTGAGGTCAGTGAGAGGTCTGGCTATCTTGCC ATAATCTCTAATAAATTTTCTGTAATACCCGGTGAGGCCCAAAAACCCCCTAACCCCTTTTACATTCTTTGGGACAGGCC AAGCCATAACACTGCTTACCTTGTTGGGATCTACTGCTACTCCATCTCCAGAAATCAAGTGTCCCAAGTATTCTACAGAT TGCTTCCCAAACAGACATTTCTTCTTATTAGCCACCAAACCTTGAGTTCTCAAAGTGGAAAGGACAGTTCTGAGATGCTC TTGATGGGTTTGCCAATCCCTACTATATACCAAGGTGTCATCAAAAAACACTAGAACAAATTTTCGCATAAATGGACGAA ATACCTCATTCATTAAACTTTGGAATGTTGATGGTGCATTCATGAGTCCAAAAGGCATCACTAAAAATTCATAGTGACCC TCATGAGTCCTGAAGGCTGTTTTATGGATATCTTCCTCTCTCACCCTTACTTGGTGGTAGCCTGACTTCAAGTCCAGCTT TGAGAAATATTTTCCTCCATGCAACTCATCCAACAATTCCTCTATCACTAGAATTGGGAATTTGTCTGGGACAGTAGCCT TGTTGAGGGCTCTATAATCAACACACATCCTCCAAGAATCATCATTCTTCTTTACCAAGATCACAGGACTTGAAAATGAA CTCGTACTGTGTCTAATTATTCCTGTTTCCAGCATCTCTTGGACTTGCTTTTCTATTTCATTCTTGTGATGGTGGGGATA CCTATAGGGTCTGACATTAACTGCTCCTTCTCCTTCCCTCAGAGTAATTACATGCTCCTTGTCTCTCCTTGGCGGAAGTC CCATTGGTTTCTGGAAAATGTCTCCATATTCTTCCAGCAACCCTTCAAGTTCCTGCAGCTTCTCAGCCTCAAGTGCAGAA TACATTCCTTGGTTCTGACTTTCCTTCCCCCACTTCCTCAAATGAGGGTGGGATTTGCCAATGACACTTTGTAGAGTTTC CATGGACTCTAACCCCTCATCCAAACCCCTTAAAGTGACCCACTCATGGTTATGCCAGAAACTCATCGTTTTCCTTGCCC AGTTCACAATCATGTCTCCCAGAGTTCTCAACCATTCAATTCCTAATACAAGATCCACAACTCCCATCTCAAACAATTGT GCATCAGTCACAAAGGGAATGTCCTCTACTTTTACCTGCAGCTTGGTGCATTTACCACGGGTTCTTGAGCAAAAACCATC CCCCAATGTAATGCGCATGGGAGGTGTGTCCACCACTTGCCAACTTAGCTTGTGCACCAGCGTCCGGGAAATGAAATTAT GAGTCGCTCCACTATCCACCAAGATCAAAATGGGAACCCCTTGAATTGTTCCTCGCAATTTGATGGTTTGCAGTTTGTGT CCTTCTTCCTGGCCCATCTGACACAGACTTATCATGCTCATCTCTCCCTCATTCTCATCCTCTTCATCTTCTACCTCAAT AGCTATCAATTTTCCCTCAGCATCTTTGTCGTCATCTTCCTCCATCAGCAGAACTCTTAATTGTCTATCAGGGCATTGAT GCATTGGGTGGTAGGCCCCTCCACACTTGA
CDS sequence (LotjaGi2g1v0196200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGTTGAGCTCAAACTCTCTCGCTCCAATCGTATCTATCGCCCTTCGGAAGCTCTGGAAGGCAAAATCATCATCAA AACTCAGTCTTCAATTTCCCACTATGGAATTCGCCTCACTCTCAAAGGTTCCGTCAACTTGCAGGTTCGTGGAGGATCAG CTGGAGTTGTTGAGTCATTCTATGGTGTTATTAAGCCCATCCCAATTGTGAATAGGACCGTTGAGGTTAAATCTTCCGGA AAAATTGGTTCAGGTACAACAGAGATACCATTTTCAATGAATCTTAAACAGCGGGATGAGAATTTAGAAAGATTTTATGA GACTTTCCATGGGTCAGACATTAATATCCAGTATTTGTTGACTGCAGATATATCTCGTGGATACTTGCATAAATCATTAT CAGCAACGACGGAGTTCATTATGGAAAGTGATAAAGCTGATCTTCTACAAAGACCAGTTTCTCCAGAGACAGTCATCTTT TACATTACCCAGGACACTCAGAGACATCCTCTACTTCCTGAAATAAAATCTGGTGGATTCCGGGTGACAGGAAAAATATG TACTCAGTGTTCTTTGTCTAGTCCTATTAATGGTGAGCTAACGGTAGAAGCATCTGCAGTTCCAATTCAGTCAATTGAAC TTCAGTTGTTTCGTGTTGAGTCCGTTCTTTTTGGGGAGAAAATTGTTAATGAGACCTCTCTGATTCAAACAACCCAGATA GCAGATGGAGATGTTTGCCGTAATTTGACTCTGCCTATCTATGTAATACTTCCCCGCCTTTTGACCTGTCCAACAATCTA TGCCGGTCCCTTCTCAATTGAGTTCAAAGTTGCCATTGTTATAAGCTTTCAGTCAGAGCTAGCAAAATTGCCCAGAAAGT CTGACTCCAGAACTCCCAGACTCTGGCTGGCAATGGAAACATTACCGCTTGAGTTAGTTCGGTCAAAGTAA
Protein sequence (LotjaGi2g1v0196200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVELKLSRSNRIYRPSEALEGKIIIKTQSSISHYGIRLTLKGSVNLQVRGGSAGVVESFYGVIKPIPIVNRTVEVKSSG KIGSGTTEIPFSMNLKQRDENLERFYETFHGSDINIQYLLTADISRGYLHKSLSATTEFIMESDKADLLQRPVSPETVIF YITQDTQRHPLLPEIKSGGFRVTGKICTQCSLSSPINGELTVEASAVPIQSIELQLFRVESVLFGEKIVNETSLIQTTQI ADGDVCRNLTLPIYVILPRLLTCPTIYAGPFSIEFKVAIVISFQSELAKLPRKSDSRTPRLWLAMETLPLELVRSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 314 | 314 | 3.2E-124 | – | |
| Gene3D | 1 | 144 | 144 | 1.0E-29 | ||
| PANTHER | 1 | 314 | 314 | 3.2E-124 | ||
| SUPERFAMILY | 3 | 171 | 169 | 4.13E-5 | ||
| Pfam | 9 | 281 | 273 | 1.6E-32 | ||
| Gene3D | 187 | 287 | 101 | 7.2E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. |
Expression pattern of LotjaGi2g1v0196200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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