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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0202400 |
| Transcript ID | LotjaGi2g1v0202400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT1G73760.1 RING/U-box superfamily protein; Swiss-Prot: sp|O49500|MBR2_ARATH E3 ubiquitin-protein ligase MBR2; TrEMBL-Plants: tr|A0A151TET0|A0A151TET0_CAJCA E3 ubiquitin-protein ligase rnf12-A; Found in the gene: LotjaGi2g1v0202400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:64241816..64247662) extracted from Lotus japonicus Gifu genome v1.2.
CTCTACACACCTCTAAGGTAACATTATTCGTAAATCACTTCCTCAGTGAAAAATACAATGAACTTACATCAAGGTTGCTT TACTTGGAAGGCATTTCTCACCTCAAAATTCAAGAGGCCACACATCACAACAACTATTTATGTTGGTAAGTAGTATAATG ATGGGTATGATCTATGATGCTACAACCCCAGAAACATTTATGATTTTTGACCTCGTGACTTCTCTGTGGGACCCCCTTCC AATGCTGTCTCCACTATAACCTCTGAAATTCTGACTTTCTGTAATGTTTTAATTTTGTTAATTAATTAATTAACATGATC CCTGTCCCCCTCTACCTTTTTTCCATTCTAGTTCAAGCCTCACTCCAAGCTACTACACTCCAAGCAAGCACAATGAGAGA GGAAATTAAGGCACTTGAATCAACTTTTTCTTTTGATAGGCAGCATCATCAGTGTAGTGTGGCTTAAAAAGCACAAAAAG AAGCAAAAGATGGTCACAGATTCCAGAGCCTCATGCTACTAATTGGATAGCAGATGCCCACAATTTCAGCAACATGACAA ATTAGAGCCCCACCTAACATACAACAACCCCATATAGAAAGCAACCTTACAATTAAAAAGATCCAATTTTCTAATCAAAT TACACGCCTGTTTGTTTGGTTTTACAGTGAGAAAGTGATTTCACTTAAGGAAAGTCCAGAAACTCTCTTAGGTTTTAGAC ATTAATGTGCAATCTCGAATTTCAATGCTTCAAACAGATTTTTAAAGTGAGAACCAAACATAGTCCACATTCTTTGTTTT CTTCTACAAAGTCTCCTAGTTCAATTTCATTCATTCATTCACAGACCCAGTTCCAGTTCATGTTTCATTCTCTTCTTTTC TCTTCTTAAATCTGAACATTTCATACATTTTCTCTCTCTCTCTCTCTCTCTCTGTAGACCATGCCTGTTGTTACTCAACA CATCAAATGGAGAAGACCCAGAAGCCATTTCAGGCAAAGAATTTCAGAAACTGATCCAAGTCCACAGCTCTCTCCAATAA CCCAATCCACTCGCTGCAAATCCACCATTTCCTCTCTCCTCTCAACTTTCTCCACCATCTCCAATGAAACCACTCATGAC AGTGGCCAGAACAGGAAGCAGAGGAAGAACACCACCAACAGCAACAGCAATGGCAATTCCTCTGCAGGAACCTTCAGAGG GCTCGGTTGCACCGCCGGTGCGTCCCAGCAGGTGTCGGTGCCGGCGGTGATTCGATCCTCCGCAGACTGGCAAGCAAAGA AGACCAGGAAAAAGAAGCTCAGGAAGAATAGTGACAGAAACAACAGAACAGAGTGTCCATGTCATGGCTCTGCCACCTGT GTGGATTTTCAGGATGTTTGGTGTAGCCCCGGAATTGGGTCTGTGGATTGTGTTGTGGCCAGGAAGAATGTGTCTTCAAG ACTAAAACTTGATGCAGAGAGAATCACACACAGGGAGGTATCATGTTTTTTTGCATAATGATCCTTCTTCTTCAATGGTT TAGCCTATAATGACTCAATCTGTTGAATTTTTTTTATTTTTTATTTTTACTTCCTCCTTAGCATTCTCTTATGTTCTTCC TTGATTGAATGATTTCTAATGTTTTGTTCAAAAATCACAAATAGCATTGTGTGAAGTTGGGTCTAGAAGAAGTATTGTTC AATTTCAGCTGGAACTGCTTTAGTTTTTGGTTTATTTTTTTAGGGAAGTGTTTTTCTGATAGAAAATACATATATAGATC ATATATAAAAATGTGTCACCTTCTTCTAAGGGGAGTTGGGTTTGGAGCCCCACCCCTTAGGCTTTGCACCCCACTAAAAT AGATACGGAATTTAAATTTCCGTATCAATACGGAAAATAAAATTTCGTATCTGTTTTAGTATATAATGAGTGGTTGAAAA TGTGACACGCATGCTTAAATACAGTACGGAATTTTAAGTTCCGTATTCAATATGGAGAATACGGAACTTTAAATTCCGTA TTTGATAAAGTGGGGTGCCAAGCCCCATAGGTGGGGTGCCAAACCCAACTCCCTCTTCTAAGAAGGCGTGCACGCATTCA ATTTTATAGTGAAAGACGCATGGGGCAGTTCTTGATTGGCTTATTGTGGACCCCTTAAGAAGAGGGGCCTGCAATAACAT ATTCATTGAATCAAGACTTGAAATTAAGGAGGACACTCATCAATCATCACTTGTTTTGTTTTATTAGCATATATTTGTAC GAAACTATAGGAATTGGAACCGACCAGTTTTCACTTTGTTGTCCAGATTCACATTATATACAAATCAGTACACTTGTGTA TTTTAAAGTTAAAATTTGAATATACAAGATTAGATAAGAATCTTCCATATCCTAAATATGTGGAATAGTTTCTGGTGGGT CTGTTGAGAATTGAGATTTACTCTCTCTTCAGTTACAAAAAAAATCGATAGCATATTAATTTTCATCATTTTTTTTGGTT TCTGTTTGCTTCGGTATGGTCTAATTGTGCTGAATATATTGGCAGCGTCCATCCTATTTGGCAAGGCGCATGGTAAACCC AGAAAGTATCTCATTTTTGGATGATGATTCTGACGTTTTCCCAATACGCCCTGCTAGATTCTATCGCCACAACATTCCAC ATCCTTCTGCTGATCATCTTGCTGAGGTTGGCTCTTTCTCCTAATCTCAGTTTTGTGACATGGATCAGGTTTATAGACAC CTGATCACAGTGAAATTTAGATTATTCATATTAGAAACTTTTGTGTGGAATATAGAATGTCATTCAATTTGATTTGACTG AAGATGTAAACGTGTATGTAAGAGCATGATGCTTTATATGCTATACATGATATCTTGGCTTAGGTTTTTAATTTGTTTTC GAGAGGTAATATTGAATATCTTGATTGTTGTTGTTGGCACCTTGAAGATAGTGAAAATTCAAGGAAGACTGATGGGGGGA AGATTGAATTCACATGATCAATTTAGAGACTGGAGACTTGATATTGATAACATGTCCTATGAGGTGAGTTCTTTCTCCAG TATTATGTTCTGATTGTAACACCAACCTATTTATAGTGTTTGTGTCCTCCATCTTCATTTTGTGCTCATAAAAACTTGTG TTGTTTTTAACAGCAATTGCTTGAGCTGGGTGAGAAAATTGGGTATGTGAACACGGGAGTTAAAGAAGATGAGATGGAAC TCAATATAAGGAAACTTAAGCTTTTCATTTCAAATGATACATCAAAACATCAACTAGACAGAAAGTGCACCATTTGTCAG GTGAGTTTGTAAATTTGAAAAAATCATCAAATCACTTTAGTTCAAAGTTCAAACATGTCTTGCCAATCTAAGGAAATTTA ATTGCATCAAAGCTTCACTCAGAATCATCTCATTTAATTTGTAATTACTTAGTCACAGTTTGTATCATTTGATTTTGGTT AAGGAAAGAATTTTCTAATCCTAGTGTAAATGTATACTCCTTTGTTTGTTGAAATTATCAATTTTCACAATTTAAAATTC TATTCCTTTTATGGTATCAAGAGCTTCCTTGTCTAAAGACCAATCGTTCCCATGGCTGCTGCCTCCTCTCTCAAGAGCAC CCACACTCTAACCACAAAGTCCATCGAGACCCTGATCGCCATCAATGCCCACCAACAAATTTCCTACCCCCTCAAGGGTG ACAAATTACCCGCCTTGGTGTAACCTTGTTGTTTCCCTCTTCAATGGTTACGATATGCCCGAATATCTGAATGAATCAAC TGTTTGCCTACCAAAAGGCAACGATGATGCCCCAACTAGTGAATACATCCACTGGTTCTGTCAGGACATGCTGATACTTT TGGTGCTTCTTGGCTCTCTCCTAGCCGAACTTATGCCCATGGTGGCTTTGGCTGACACCTCTTGCAAGGGGTGGTCTATC CTGTCGTGTTTGCTTCCCAACAAATCTCAAACGCGTGTTATGAAGCCGAAGGAGGATCTCGCACTCACAACCTTTGGTAC CCAATCTGCTGGTGCTTCCCTGCAAGGCCGTAACTCATCAAGGATGATCAGACAACTCGATTCACAACTTGCCAATCAAA CAACTCGATGTGAGTGATGCTTTTCTTCATGGTTCACTTTTAGAAACTGTCCACATGCAGCAAACACCAGGTTTTGTTGA TGTTGCACACCCTTCTCATGTATGCCACCTCCGGAAATCTCTGTATAGCCTCAAGCAAGCACCTAGAGCATGGTATCATG CACTAAACGGTGCGCTTGTCAATCTTGACTTTGTTCAGTCACGATTGGACAACTCCTTGTTTCTTTATCATCATGGTAAT ACTCATTTATATCTTCTGTTTTACATCGATGATACTGTATTCACATGTTATGATACTCCATTGATCTCCACGCTCATCAA GCAACTTGGCGAGACTTTTGCACTAAAGGACCTTGATCATCTTCCATACTTTCTTGGCATTGAGGTAGTCTCCTGCAAAG AAGGATTACTGTACATCTCAGACATTCTTCATCGCCACAAAATGAACCCTAGTGTAGGCGTTAGTCTCTTGCTAATAGAA AGAATCCATTTTCACAATTCAAAATTTACTCAGTTTATATATCTGCATTGCAGTCAGCTTTGTGAAATGTTTTTAAACAA TTTAATAAGATGTTAATTTGTCTTCATTGTTTGTTCAGGAGGAGTATGAGTCAGATGATGAGCTGGGGAAGTTGAAATGT GAACACTGCTTTCACTTTCAGTGCATAAAACAATGGCTAGTGCTTAAAAACTTCTGCCCTGTATGCAAGCAAGAAGTTGT GGTTCGACACTGACAGTTCTAATTTTATTTTTTTGCCCCTTAAGATTAGTGTATAGTTTTTTCATATGCAATATAAGCAT TATTGGTTGCATCTTTCAAAACTTAGAAGCATTATATTTATATATACATGTTATATCTGTCCATGGTCTCGCAATTGGAC TATGCTTTCTTTTCGGATTGGATGAGGTTATTGTCATTTTTCACTTTCTTAATGAAATTGGCATTTGAACACTTTTCCTT AAGTTTCTTCTACTTTGTTTTATGCATGGTTTTGTGATTTGAATACAGAGAGGTAAAGGAGCACTTACTATTCCTTTTTT CTTATATTTGACCAAAGAATGGAATATTGACTGAAGGGAAGATGATGTTAGATTTTACAGATGTAACATCCATTACCTCT ATCGTTTGTCTCATTTTCTCTCTATAACCTCTGCCGATCCTATATCCCTCTTCTGTAATTAATGGTCTCAAACGAGGGTT CCAAACAAATGCCCGGAACTCATGGGACAATATGTAGTGTATTGATTCGTGTCAAGTAATTTAAGAGTTTACCGTCTGTT CAGATTGTCAAGGTCTCGCTAGTTAGATGCTAGTCAAAAGTGAAATTGTTTTATTTAAGTAACGTGAAGTGGTAAAGAAT ACGATAATAGAAGTTGATAAAGATAAACAAATAAGAAAAATGCGCTTGGAGAATGATTTCATTTAATCCAAACTTGTTCT CAACCAATACTATAAGGTAGAACTATTCATTTAAGGTATCACTAAGAGTTATCACCTACTAATTCTTCAGCTAAGTGGTT CTACGCCTCAATCTCTTAAGTCCTAACAATCTCAAAAGGAGTAGTAAACTACAAAACCACTTGATGAGACAAGCCCAAAA TTTTGTTCCTAACCCAAGAAATTGGTGTACTCGTGGATGAAATATCTAACTGTCACTCGAGAGATACCTTTGATTCTTGA CCTAAGATAATCATATCATAGTATTGAGATTTCAACTGTCATTCTAACTTACGATAATCATTTCCTATGATGATCGATGT AATGAGT
CDS sequence (LotjaGi2g1v0202400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTGTTGTTACTCAACACATCAAATGGAGAAGACCCAGAAGCCATTTCAGGCAAAGAATTTCAGAAACTGATCCAAG TCCACAGCTCTCTCCAATAACCCAATCCACTCGCTGCAAATCCACCATTTCCTCTCTCCTCTCAACTTTCTCCACCATCT CCAATGAAACCACTCATGACAGTGGCCAGAACAGGAAGCAGAGGAAGAACACCACCAACAGCAACAGCAATGGCAATTCC TCTGCAGGAACCTTCAGAGGGCTCGGTTGCACCGCCGGTGCGTCCCAGCAGGTGTCGGTGCCGGCGGTGATTCGATCCTC CGCAGACTGGCAAGCAAAGAAGACCAGGAAAAAGAAGCTCAGGAAGAATAGTGACAGAAACAACAGAACAGAGTGTCCAT GTCATGGCTCTGCCACCTGTGTGGATTTTCAGGATGTTTGGTGTAGCCCCGGAATTGGGTCTGTGGATTGTGTTGTGGCC AGGAAGAATGTGTCTTCAAGACTAAAACTTGATGCAGAGAGAATCACACACAGGGAGCGTCCATCCTATTTGGCAAGGCG CATGGTAAACCCAGAAAGTATCTCATTTTTGGATGATGATTCTGACGTTTTCCCAATACGCCCTGCTAGATTCTATCGCC ACAACATTCCACATCCTTCTGCTGATCATCTTGCTGAGATAGTGAAAATTCAAGGAAGACTGATGGGGGGAAGATTGAAT TCACATGATCAATTTAGAGACTGGAGACTTGATATTGATAACATGTCCTATGAGCAATTGCTTGAGCTGGGTGAGAAAAT TGGGTATGTGAACACGGGAGTTAAAGAAGATGAGATGGAACTCAATATAAGGAAACTTAAGCTTTTCATTTCAAATGATA CATCAAAACATCAACTAGACAGAAAGTGCACCATTTGTCAGGAGGAGTATGAGTCAGATGATGAGCTGGGGAAGTTGAAA TGTGAACACTGCTTTCACTTTCAGTGCATAAAACAATGGCTAGTGCTTAAAAACTTCTGCCCTGTATGCAAGCAAGAAGT TGTGGTTCGACACTGA
Protein sequence (LotjaGi2g1v0202400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPVVTQHIKWRRPRSHFRQRISETDPSPQLSPITQSTRCKSTISSLLSTFSTISNETTHDSGQNRKQRKNTTNSNSNGNS SAGTFRGLGCTAGASQQVSVPAVIRSSADWQAKKTRKKKLRKNSDRNNRTECPCHGSATCVDFQDVWCSPGIGSVDCVVA RKNVSSRLKLDAERITHRERPSYLARRMVNPESISFLDDDSDVFPIRPARFYRHNIPHPSADHLAEIVKIQGRLMGGRLN SHDQFRDWRLDIDNMSYEQLLELGEKIGYVNTGVKEDEMELNIRKLKLFISNDTSKHQLDRKCTICQEEYESDDELGKLK CEHCFHFQCIKQWLVLKNFCPVCKQEVVVRH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 351 | 350 | 1.7E-143 | – | |
| PANTHER | 2 | 351 | 350 | 1.7E-143 | – | |
| MobiDBLite | 54 | 88 | 35 | - | – | |
| MobiDBLite | 67 | 88 | 22 | - | – | |
| MobiDBLite | 108 | 128 | 21 | - | – | |
| Gene3D | 278 | 350 | 73 | 2.2E-18 | ||
| Pfam | 302 | 344 | 43 | 1.2E-11 | ||
| SUPERFAMILY | 302 | 349 | 48 | 1.15E-18 | – | |
| ProSiteProfiles | 303 | 344 | 42 | 12.017 | ||
| SMART | 303 | 343 | 41 | 3.4E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0202400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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