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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0207100 |
| Transcript ID | LotjaGi2g1v0207100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase RING1; TAIR: AT3G19950.2 RING/U-box superfamily protein; Swiss-Prot: sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like; TrEMBL-Plants: tr|A0A151TWL1|A0A151TWL1_CAJCA E3 ubiquitin-protein ligase rnf181 family; Found in the gene: LotjaGi2g1v0207100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:65093405..65101659) extracted from Lotus japonicus Gifu genome v1.2.
CCACCACTCTCTTTTCTCTCTCCCTCTCTCTCCCTCTGTTGCTTCCCTTCCTTCTCTTCATTTCATTCTCTTCTTTTCTA ATAATCCTCTCTCTCTCTCTCTTAATCATCTTCTTTTAACGTTGACATGTCTTCTGCCGGCGCCGGTGACCGCGCCGTTA CCTCCGGCGAGCCTCGCCGTTATTTCTGCCACCAGTGCGACCGCACCGTCCCTATTTCCCCTTCCTCCGGCGACCTCATC TGCCCCAATTGCAACGGTGGCTTCCTCGAGGAACTCGAAACCCCAATCCCCAACCCTAACCCTAACCCTATCCATCCCTT CTTCTCCTTCACCACCGCCTCCCCCGTCGCCGCATCCACCGCTTTCCCCCTCGCCTTCCCCGCCGCTACTCAACCGTTCG ATGATCTCTCCGCCTTATTCGGCACCCGCTCTTCCCCGCCTTTTGGCGGTGACACCAACGACGCGTTCAATCCCTTCGCG TTCCTCCAGAACTACGTCCAAACCCTGGCAGCCGGAGGCGCCAACGTCCAGTTCGTGATCGAGAACTCCGGCGACCCTAC CGGCGCGTTCCGGATCCCCAGCAACGTGAACCATGGCGATTACTTCTTCGGTCCGGGCCTCGAGGAGCTCATCCAGCAAC TCGCGGAGAATGATCCGAATCGCCGTGGAGGGGTTCCCGGATGTTTCGGTCACGGAGGAGCTTCTGGCGTCGGATTCGGC GCAGTGCGCTGTGTGTAAGGATATCTTCGGCCTCGGCGACACCGCGAAGCAGATGCATTGCAAGCATATTTATCATGCGG ATTGCATCTTGCCTTGGTTGGAAATGCACAACTCTTGCCCGGTTTGCCGGCACGAGTTGCCCACTGATGATCCTGACTAC GAGCAGAGGGCAGGCCGCCGTGTGTCGACGGAGACTTCTGGCGGTGGTGGTGGCCGCAGCAGCGGTGATAGTTCACAGAG GAGGGGGTTTAGGGTGTCTTTGCCGTGGCCTTTTAGGCAATCTGGTTCTTCGGCTGCGGAGACAAGCAATGTTGGGAATG CTAACAACAACAGCAATAACAATAGTGGAAATAATAGTGGGCAATCGAATAATGAAAATAGGGGGAATCAAAATTTTGAG TCGGAGACCAGACAAGAAGATCTCAACTGAGAGCCACTCATGTTTCTTATGTAAGTTTCTTTCTCTTGATTGTTGAATTC TGGTTATGTTGTATGGCTATGTTGTAGCTTCCACATTGTAGTTTGGTATTGCATCATAGGATTTTATATTTCAAATGCAG TTAGTAACATGAATAAATATGAAGTAGCGTTGTTCAAGAGTGAGTTCATGCTGAATTTGGCTCTGGATTATTCTTATGAA ACTAATTTGCTTCATTTAATTCAGTGTTGTTGAATGTGGATAGCGGCTGACCCCAAAATTGCTATAGCGATATAGCGCAT AGCATGATGGCCGCTAGCCCGCTACACTAAATTTTTATATAATGTATACAATATACATTAATAAATGATAAAATATACTC GACTTATGATATTCATAATTAATAATAAAAAGTCACTGGACACACAGATATCATACAACCCTGACCAGTGAGCGATAAAA AAGGAGCGAATAAAGTCAAAATAGAACCATTAAAACAACAAAGAAGAGCGAGGCCATAAAAGAGATAAGATAATCAACAA AAGAAAGAAAAACAGGGGAGAAAGAACACAGCTGAATGGGAAGAAAAGAGACTCCTGGGGGGCTGCAGATAGTCACCGGA GGGTCGCTGGATCGTGATCAGTCTTCGTGCGGTGGCTGGATGGCCGTCGCTTGATGGGTGCAGAATGGGTAAGAAGCTAG ACGACCTTATCAGGAAGGACAGAATTGCGAAGGATAAGACAGTGTTTTTATCAACAGTAACGGAAGTCCCATATTATCCT TCATTTATTTTGACAGAAAACCCATTATTACCCCTAAAAGTTTGCCATAATCTTCAAATTGTGAGGTTAAGTTTGAGTTT TCCATGTTTCATCGTTCTAGTGCCGCAAAGGCATTGCGAAATCTACGAAAAGGATCGCGACTTCAGTCGTGATGGACGCA ACATTAAACTGCTCCGCTATGGGACTTGCTGTAGCTGCCAGGGGCTGCTCCGCTGCGATAGCGCAATCGGGCGCTATTGA CAAGCTTAGTTTGATTGTCCTGGGGTGAATGACTTGTCTTGTGAGGGTACTTTGTACGGATATAGACTTTGAAATTTGTT GCATGTTAGGCATTAGGTAACAAGTTAGAGTTAGACATAGGTGGCATTTCCTTTTAGTTTGTAGCCAATGACTATTTGGG AACTAATTGTAAAGGAATTTTTTTTTTTATCATTGATTGAAGGTGCCTCAATCAATGAAAGCGTGATGTTTCTAAACTTC CAATTTCACTAGAAAATATGGATTGTGTTTGTGGCTACTCAGTACTACTTTAAGATGCCTTCAGTTTATTTTTGGTAATA CTTGACCGGAGCATAAATTGGGGGCCATGGGTATGGAAGGGTTTGATGATGCTTGATCTGTTTTGGTGGATGCAATCACA TTATTAATGGATCAATTTGATCACCTATCCATTTAGCATGTCCAATCAAAGGATGTGAATTTGGTTTTTATTATATCCAA TTTGGAAAGCCCAGGATATGAGTTAAATAGAAAATGATTTATGTTAGACTCCTTTGTCATCCGAAGATAAACATGAAACT CATTGCCACATAAAATCTTTTTTATCTCATGAGGTGTTTAAATCTGAGGACTTAGGCACTATTGCAGCAAGCATGAAGTA CTATGTTTAGAACTTTCCATTCATTGTATATAATAGTAGAATATATACTCCTGTGGTTCGTTGTGAAAGATTTGCTGCGA GCAAGGTGATCTACTAATGTGCATATCATGAGCTGGTATATTTTATAAAACTAGTATTTCAGCTTGAGTAATGGACCGGT AACAAATTAAAATCTTATATCATATTTTGAATTTTAAATAAAAAATAAATAACATTTTATGTGTACATGTAGAGGGCAAT TATTTTGATTTTTAATTAAAAAAGACTAAAGATTGGAATAGGAAAAAGTAGAATTAGAATTAGAAATCGAATATAAATTG TAAGATAAGAATTAGAAATTGAATGAAAAATATAATAACGAATAGAAATTGAGCTAATAAGTTCAAATTGGAACAATTTA GGATAATGATTCAATTTTAAATTGTGATCTATGTTGTCAGTCCCAGTTCCCGGCTCGTCGAGGCCAGCTCCAAAACTGGG ATAGCAGGATCTCGGAAAGCGGGATGGCTGGGATAGTGAATTTTTGTCTATATTTTGTATAATTTATTCCATATGTATGT ACATAATAAATCAATGATGAATATTACTTGAATTTCATAACATATGCATAATTCCATAGTAGGAAACTAGCAATTAAAGT CGTAGGTCTTGAACAAAAAGTCATACAACCAAAAACGAACATACATGGTACATAATTACTTAAATACTAAAGTCAAGAGC AAGGTCAAAATAAAACAGAGGAGAGGAGAGGAAATAAAACAGAACAAAGGAAATGAGAACACAAAACCTACCCTACCAGA AGGTCGCCAGAGGCTCGTGATGGTTGCCGGCCGGTTTTGGTGCTTCAGAGAGCATCGACGATGAGAGGGAAGAGGAGAGG GAATGGGTCAAGTGTGATTTAATGGGTCGACTGTTTGGGGAATGGGTCGCAAAGAGGGTATTTTACGAAAACAGGGGCAT GGGTCAAGTGAATCACTGTCATGCCGGGGTCGCGCGGGAACGGGCACAATTTCAGCCGCGATCCCGGCCGTGACGGCTAT CTGGATGGGATGGGAAAATTTGTGACTAGATTTGCGACATTGCTGGGATGGGTACTCAAGATACCGGCAAGATTGACAAC CTAGATTGTGATAATAAATTATGCTTAGCTATTGAAATTTAATATACATTTCTGACTAATCGGATTTGGCTTTTCTAAAA GGAGGGGGTGTGTTTTAGGGGGATAAAAATCAGGGACAAGCAACTGATACTTGGGAGTTAACATATACTTTGGCCAAGAG AACTTTGGAAAAGAAATACAATTTTCATGTTTTTTTTTTCCAAATGAAATATTAAAACCAGCTTAATTACGTGTTTGTTA AACCTTGTAGGAGGTAATGCAGTGATAGGTTTCAAATCCATCTTGTAAACAGGCTGCTCTATGTAAGTAAAGAAGGCAAT CCCTATTTGTAATCCCATTAGTTGACCGTATTTTCCATTGTGTAGAAAAACTTTGATCACGAGACATATAGTACAGCAAT ACAGTACTTGATTGTGTTCTATTTTGTATGATTTCGTTGTCTAAAATAATTTTGATTGGGACAATACACTACTTTATGAT TTCATTGTCTATAATAGTTTTGATTGGGACAACTATAGTCTATAGTACAGCAGTATATTACCAATCATGATGGTTTTCCA TAAAGTCAAGTGGCATTCAAGGTCGAAGAGCATTACTTTGTTTCTGATGTCCAGTGTTATTTCTACTCATATTTATAGAT ATGGGTAAGTTACATGAGGAAACTAATTAAGACTAGTTATCCTAAATAAATTAAGAAATATATCAATATAAATAATAAAT TACTAAAGAATAATCTGAATTACCTTAATTACTCTAAAATATGATTATGACGTTTTAAGTTACTATAAGATATGATCTAG ATGTTATAAGACATCTTTTCATATTCTAACAGTTATCAGTGGAAGATGGTGGTTTATGGCTGAGCCAAAAATCCACCCCA CGAACATGATTGATCGAGTTGCGGCTTATGGTGTAAGTATGGTGCCTATTATGAAAATGTAATATTTATAAGAAATGTAC TAAAAAACTGCAGAATATAATAAAACTAGTAACATATCTCAAGTTCTCAACCTTTTGAGTATAATAGATGTACAAATAAA TTCACCTGCCATCAGTTGTGAGGACTAGAGGGCAATCACTGCATGAAACAAGAGGAAAGAGATGAAAAAAATGAGTATAA GAAGGCAAGAAGGAAGAATAAGAGGAAACAAAAATTAAAACAGAATAACTGAAAAAAGAAGTGACAACAGAATCAAACAA GGGGAAATAAGAGTACAGAGAGGAAAAAGCCGAATCAAATATAACCATGCAAGGAAAGGAAAAGGAAAATATTCAGATAG AAGAGGAAAGAAGACATAAAATAAAGGGAAGGTGAGAATAGAAAAGGGAAAACAGAGAACAAAGAGAGTTGAGAAACAGA AAAACAAAATTTGTCTGTTCCCCAAAGAAGGAAGGTGGCTGGAAAATGGAGGTCATCAGATCTGGTCACCAGAGGTGATC ACTGGATATGGGAGGTTGCTGCTGCTGGAGATGAGAGAGGAAAGCCTTGTGAGGAATGCGAGTCCCAATTGGGTGTTACG ACTGAAGCAGAGTGGGATTTTTTCTTAAGGTTCGAGTGGGGTTAAAAACACTGAATGAGTTGGGTGGATTGGGCCCATCT CCCTCTCTTTTGTTTTCCTCTGCTTATAAGCTATTTCTGCCATTTCCGCGAACTGCGTGGCTGCCATTCTACACAAAACC CGTAATGCCATTGGCATGGGATGGCGTCTTGTGACTCTTGTCGAATTCAAAACTTACATGGCCACAATTCAATTACACTA TACTGCTCATGCCCCTGATCAGTACTCGTAAATGTATTTATTTCAAAATTCATTGGTTTTTGATTTGGAAGTTCATGTTG CCCTAATGTCAATTATTTGATGATGCATTACATCTCAAGCAATGGTATTTATCTTACCTAGTGTGTTCATCATACTTATT ATAGCTTTATGCCCTATTCATGGAGAATCTTCTGTCAATAAAGATTGCCGGATGATTTGTAACATTTTTATTTGTTGGAA AACATTTTGACTTTGTTGAAAACATTAGTTAGCATCATTTCTCAAACAAGAATAGAAGCCCATAAGTATTATACTTCGAT GTTTTCAGTTTTCACTATTTCTTTATCTTCTGATATTATTATTATTTGGTGACATTGGCTTCAGTACTTTCAGAAATAGT AGCTACTAGGCTCTAGCTGTTAGGGATGTGTATATAATAAAAACATTTGTATCTTCACTAGCTTAAGCTTTAAGGACTGT TCATAATATGATATCAAAGCCTCAATGACTAGTGTTTGAGTTTGATCCTTGTCATCATCATGCTTTTTAAAAATTGAATT TCAGTTTCAGCCCAAGGCAGATGGACTTATTACCCCTGCTTCAAGTCCAAATGGCTCTTGTGTGAGGGAGTGATTTAGAA AGGCTAATATAAAATTATTCATGCATCTTTACCTTACAACTTAAACTTTTGGAATAACTAGTTCATGCCACTAGGCACTA GCTAAATAATAATTTCTTATAAAATCAATTTTAGCCTTCAAATTGGAGTTACTTGATGCAGAGCTGTTTCTTTGCATTCA ACATTTCAAACTTTAGTTTGTAAACAATTGCATACTGAAATGGTTGTTGCTACTGTGTCTTGGTTTTAACCTCAGGATAT TGTGTGATGGGGAGTGGTATAATTCCGTGCTCTATGAATAAGTAGTTCTTTGAAACTTAAAGTCAATGTGTTCAGGCAAT AGTACATGGCATATGCAGCTTTTCTGCTGTTATGTGACATGCATCTCCTAAGAATTTAAGCTTGATGCATCTTGTTTGGT TCTATAGTGTTGCACTGTCGTTGCACTTCATAATGTGTCTTTGAGTTTAACTTAGAAATCTTGGTCCATATATGGGGCAA TTTTTAAAAAGAAATATTTTATTACTTCTAGATGTCCTGAGTTACTGTTCCATTATCTGTTTTACAGTATAGCAAAAATC TGCTTTTTGATATACCCAATTATAACATACACTTGAGGAGGTTTTGACAGAGTTCTATGTTCTTTTGGCAGGCATGAAGC GTCTCAAATCCTGCTGCATTTTGTTTCATAGAAATGATGTTAAATATCAAGGAGTGGTTTGTGACAGTTGCAAATGTTAT ATTTGATTACAATGAACTTGCGTACCTGTCCATAACCATTTTGCCGCTTAGATTTTTTTTTAGAATCACAATTTTATGTG CATTATTGGTTTGATATTTTATGAATTTTATTGTCTCTGACTCCTTTTCCCTTGTGCATCTCTTCTGGCTTTGGTTTCAA GTGAGGTTTATTTTAGAGGGAGATGTTTTGTAGCCATTAATTCACAAATAAACGGTTGAGATTGTAATAAGATGCATGTA CATATATAATAAGCTGTGAACTTATTTAAGGTCAAATGTGTTTTTTATAGCGAATTTTATGATGTGATTCCTCTTCTATC TGAAATGTTGGGAGCAAAGACCCATAATGTGACAAAACTGAGCCTTTAACCTCTTCAATGTGTCTTAAAACTTCTCTTTG AGCATCCTATCCCACATCAAAGCAGGAAAAGAAAAGAAAAAAGGTTTTAGCTCCCAACCAAAGGAGTTTTGTTGAATATA TGCCCCTTCACTTCACCTGGGTTGTGCAGCTTATTATTCTTCATTAGTTTCATCATATATGTTACCTTGGGCAAACCAAC CTGGTCACAGGTCTCAGTTACCCGAACCCCCCCAGCTTTTAAATACATGTGTGTGAGCTGTAGAAATCATTATAGGCATA TCATATTTTTTTATCTTAACCTCCATCTCTTTTATCTTGGCTCCCCTGGTTTTAAATTTCTGTCTCCAATGGTTCCATAA AAACCCGGGTGCTTCAACAATTCTTTGATCTTAACCTCCATCGCATTAGTTATGTTCCAACCTGTTCTACCTAGTTCCAT GTTACCAACACTACCGAATAGTCTACTGGGAGAGGATTAACCATTATATATTCTCTGTTGACTAGTTTGAAAATTCATCT CAATGTGTTTCCAAAGTGGTGGCACTAACTTCGCCATCTCTCCGGGAGCTTAGACAGACTATCAGGCTATGACTGATGAT AAGTGAATAAAGGAAGCTAATTATTCGGGGAGACAGGAGAGATGTTTGCATTGTAGGGTTGTTCATTTGACCAATACCAA ATTAATATCTCACTCCCCCAATAGTGCAAATAAGTTAGGCAAATTGAATAATATACTAATTTTTCTCATATTAGGTCTTA TTCAAATGAACATATTTAAATAATATAATGGTACCATTTTGTTATTACTATTGTATTAGGTTTCATAATTTTTATAATTA TATACTCATTAGTCA
CDS sequence (LotjaGi2g1v0207100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCTGCCGGCGCCGGTGACCGCGCCGTTACCTCCGGCGAGCCTCGCCGTTATTTCTGCCACCAGTGCGACCGCAC CGTCCCTATTTCCCCTTCCTCCGGCGACCTCATCTGCCCCAATTGCAACGGTGGCTTCCTCGAGGAACTCGAAACCCCAA TCCCCAACCCTAACCCTAACCCTATCCATCCCTTCTTCTCCTTCACCACCGCCTCCCCCGTCGCCGCATCCACCGCTTTC CCCCTCGCCTTCCCCGCCGCTACTCAACCGTTCGATGATCTCTCCGCCTTATTCGGCACCCGCTCTTCCCCGCCTTTTGG CGGTGACACCAACGACGCGTTCAATCCCTTCGCGTTCCTCCAGAACTACGTCCAAACCCTGGCAGCCGGAGGCGCCAACG TCCAGTTCGTGATCGAGAACTCCGGCGACCCTACCGGCGCGTTCCGGATCCCCAGCAACGTGAACCATGGCGATTACTTC TTCGGTCCGGGCCTCGAGGAGCTCATCCAGCAACTCGCGGAGAATGATCCGAATCGCCGTGGAGGGGTTCCCGGATGTTT CGGTCACGGAGGAGCTTCTGGCGTCGGATTCGGCGCAGTGCGCTGTGTGTAA
Protein sequence (LotjaGi2g1v0207100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSAGAGDRAVTSGEPRRYFCHQCDRTVPISPSSGDLICPNCNGGFLEELETPIPNPNPNPIHPFFSFTTASPVAASTAF PLAFPAATQPFDDLSALFGTRSSPPFGGDTNDAFNPFAFLQNYVQTLAAGGANVQFVIENSGDPTGAFRIPSNVNHGDYF FGPGLEELIQQLAENDPNRRGGVPGCFGHGGASGVGFGAVRCV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 18 | 50 | 33 | 6.1E-15 | ||
| PANTHER | 72 | 184 | 113 | 1.0E-40 | – | |
| PANTHER | 72 | 184 | 113 | 1.0E-40 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin protein ligase activity | Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. |
Expression pattern of LotjaGi2g1v0207100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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