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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR039525
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 13 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.933s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0053500.1
n.a. RING/U-box superfamily protein; TAIR: AT2G40830.1 RING-H2 finger C1A; Swiss-Prot: sp|O22197|RHC1A_ARATH Probable E3 ubiquitin-protein ligase RHC1A; TrEMBL-Plants: tr|A0A151QZ96|A0A151QZ96_CAJCA RING finger protein 126 family; Found in the gene: LotjaGi1g1v0053500 LjG1.1_chr1 7534088 7542870 -
2 domain predictions
1 GO term
LotjaGi1g1v0053500.2
n.a. RING/U-box superfamily protein; TAIR: AT2G40830.1 RING-H2 finger C1A; Swiss-Prot: sp|O22197|RHC1A_ARATH Probable E3 ubiquitin-protein ligase RHC1A; TrEMBL-Plants: tr|A0A151QZ96|A0A151QZ96_CAJCA RING finger protein 126 family; Found in the gene: LotjaGi1g1v0053500 LjG1.1_chr1 7534536 7542737 -
2 domain predictions
1 GO term
LotjaGi1g1v0088400.1
n.a. RING/U-box superfamily protein; TAIR: AT5G59550.2 zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q940T5|RDUF2_ARATH E3 ubiquitin-protein ligase RDUF2; TrEMBL-Plants: tr|I1JI05|I1JI05_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0088400 LjG1.1_chr1 12848131 12850311 +
2 domain predictions
1 GO term
LotjaGi1g1v0257800.1
n.a. RING/U-box superfamily protein, putative; TAIR: AT1G60360.1 RING/U-box superfamily protein; Swiss-Prot: sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1; TrEMBL-Plants: tr|A0A1J7HBW1|A0A1J7HBW1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0257800 LjG1.1_chr1 62395256 62398621 +
2 domain predictions
1 GO term
LotjaGi2g1v0180200.1
n.a. RING/U-box superfamily protein; TAIR: AT3G19950.2 RING/U-box superfamily protein; Swiss-Prot: sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1; TrEMBL-Plants: tr|A0A0L9VIQ9|A0A0L9VIQ9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0180200 LjG1.1_chr2 60192960 60201087 -
2 domain predictions
1 GO term
LotjaGi2g1v0207100.1
n.a. E3 ubiquitin-protein ligase RING1; TAIR: AT3G19950.2 RING/U-box superfamily protein; Swiss-Prot: sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like; TrEMBL-Plants: tr|A0A151TWL1|A0A151TWL1_CAJCA E3 ubiquitin-protein ligase rnf181 family; Found in the gene: LotjaGi2g1v0207100 LjG1.1_chr2 65093405 65101659 -
2 domain predictions
1 GO term
LotjaGi3g1v0128300_LC.1
n.a. RING/U-box superfamily protein; TAIR: AT3G60080.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9SPL2|CIP8_ARATH E3 ubiquitin-protein ligase CIP8; TrEMBL-Plants: tr|V7BVQ9|V7BVQ9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0128300_LC LjG1.1_chr3 15779814 15783288 -
2 domain predictions
1 GO term
LotjaGi3g1v0128300_LC.2
n.a. RING/U-box superfamily protein; TAIR: AT3G60080.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9SPL2|CIP8_ARATH E3 ubiquitin-protein ligase CIP8; TrEMBL-Plants: tr|V7BVQ9|V7BVQ9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0128300_LC LjG1.1_chr3 15780023 15783368 -
2 domain predictions
1 GO term
LotjaGi3g1v0285400.1
n.a. RING/U-box superfamily protein; TAIR: AT3G46620.1 zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q9SNB6|RDUF1_ARATH E3 ubiquitin-protein ligase RDUF1; TrEMBL-Plants: tr|Q2HS43|Q2HS43_MEDTR Zinc finger, C3HC4 type (RING finger) protein, putative; Found in the gene: LotjaGi3g1v0285400 LjG1.1_chr3 57609027 57611317 -
2 domain predictions
1 GO term
LotjaGi5g1v0132600.1
n.a. RING/U-box superfamily protein; TAIR: AT2G40830.1 RING-H2 finger C1A; Swiss-Prot: sp|O22197|RHC1A_ARATH Probable E3 ubiquitin-protein ligase RHC1A; TrEMBL-Plants: tr|I3SUR7|I3SUR7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0132600 LjG1.1_chr5 31058186 31062736 +
2 domain predictions
1 GO term
LotjaGi5g1v0353500.1
n.a. RING/U-box superfamily protein; TAIR: AT5G64920.1 COP1-interacting protein 8; Swiss-Prot: sp|Q9SPL2|CIP8_ARATH E3 ubiquitin-protein ligase CIP8; TrEMBL-Plants: tr|V7BE55|V7BE55_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0353500 LjG1.1_chr5 66916545 66919550 +
2 domain predictions
1 GO term
LotjaGi6g1v0031300.1
n.a. RING/U-box superfamily protein; TAIR: AT5G56340.1 RING/U-box superfamily protein; Swiss-Prot: sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1; TrEMBL-Plants: tr|A0A151U8J5|A0A151U8J5_CAJCA RING finger protein 115; Found in the gene: LotjaGi6g1v0031300 LjG1.1_chr6 5878962 5881731 -
2 domain predictions
1 GO term
LotjaGi6g1v0063000.1
n.a. RING/U-box superfamily protein; TAIR: AT2G39720.1 RING-H2 finger C2A; Swiss-Prot: sp|O22283|RHC2A_ARATH Probable E3 ubiquitin-protein ligase RHC2A; TrEMBL-Plants: tr|V7CZ69|V7CZ69_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0063000 LjG1.1_chr6 11598429 11599623 -
2 domain predictions
1 GO term