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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0214100 |
| Transcript ID | LotjaGi2g1v0214100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT2G26440.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|O48711|PME12_ARATH Probable pectinesterase/pectinesterase inhibitor 12; TrEMBL-Plants: tr|A0A151R3E2|A0A151R3E2_CAJCA Pectinesterase; Found in the gene: LotjaGi2g1v0214100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:66417199..66420926) extracted from Lotus japonicus Gifu genome v1.2.
GGCTTGTGAAAAAGACTAATTAAGCATATAAATGATTCCAAAGGAATGGTTAGACATTCACATGCATTTTTAGACAACCC CTTTTATAACAGGACATTAGATCATCAATTAATTAACATTATGATCAAGAGGGGAGAAAATGAAGCAATATAATGGAAAC CAATCTTCAAACCCGCTTAATGGTTTGGTCACGGGTTGCCATTCTTCATAATTCACTTTCTCAATTATATATACATCCAC CAACTATTCAGCAATTGACATGGTACTTGATTTGCAGCATGCAAGTTGTTCACACTTCACAGTCAGAACAGTGAATAATT TAACATTACATGGATTCCTCATCTCAAAAGCACTTCCTCTTTCTGCTTGTTCTTGCAATCTTCTTCTCACACACTTGTTC TGTCCACTCCATTAATGCTTCCACAACAACATTCCATTCCTTAAGATCTTTCTGCAGAACCACTCCATACCCAGAAGTTT GCTTCAATTCATTGAAGCTCTCCATATCAATAAACATAAGTCCAAACATCATCACCTACCTCCTTCACTCCCTCCAAACA GCAATATCTGAAGCCACCAAGCTCTCAAATCTATTCCAAAATGCTGGACACCCAAACATCATAGAGAAACAAAGAGGAGC AGTCCAAGACTGCAAGGAACTCCACCAGTCCACCTTGTCTTCTCTGAAAAGATCATTAACTGGGATTGATCATCAATCCC CCAATTCAAAGAACCTTGTTGATGCAAGATCCTACCTCAGTGCAGCCCTCACCAACAAGAACACATGTCTAGAAGGCCTA GACTCTGCTTCTGGTACACTCAAACAGGTTCTGGTGGATTCTGTGATTAACACTTACAAGCATGTCAGTAATTCTCTTTC TATGCTTTCTAAGCAAGGAATTGAGGCTCCTCTCAAAGGACAGAAGAACACGGACCATGTGGAAGAATACGGAGTTCTTG TTGTGGCTGCAGATGGAACTGGGAACTTCAGCACAATCACAGAAGCAATAGCCTTTGCTCCAAATAATAGCATGTACAGG ACAGTGATCTATGTGAAAGAAGGGATTTACCAGGAAAATGTGGAGATCCCAAGTTATAAGACTAACATTGTGATGCTTGG AGATGGAAGTGATGTCACTGTCATTACTGGTAACAGGAGCGTTGGTGATGGCTGGACCACTTTCAGATCTGCAACTCTAG GTGATGTCCTTGTTCCCTTTTCTTGCTATATCATTCCAAAGGACACACACTTTGGTCGCATGTACAAACCACTGATTATA AACTATCAAAATCAAAATTATCAATGAAGTATTAGGGGTCCATCTTTATTTGGACATGCATTTACAAAAGTTAGGGGTCC ATCTTTATATATAGTGGTCAGAATTGGTATATGTTCTTACAAAAGTTACAATATGCAATTACAAAATGAATATGCCTTCT CTTTTTCTTCTAATCCCTTTTTATCAAATCAATTGAGTGTTTTCCCTCAGCCCAGTTGCTTTATCTCTTTGCCTTGTAGG GTCACTGTCCATTTCATCTTTTGAGCATGTGAGCCGCTAGGTAACATGTTCCTGATTCGGAAGTACTATTTGCCTCATCT GTCCTATGAATCTATACTCTATGTTGTCTCTGATTCCCGGTCTTTGAGATCTATTTCTTATTTATTGTTATATGTGGTCC CTTATAATTGTTATTGGTCGAGTGTAATAATGTATCATCTTTCAAGTAAGCCCATGGATGAGCTAGAATTAGACTCAGGA CCCCTTAACCACAAGGTATGTACCCCGGCCCGGGGTATATGCTCTAGTCCGCCCGGATAAGAGGATACAGTAGCCTTTAT TAAACTGAAGGTATTAAACTAATAATGATGTTTAGTGTACACTCAAAGAGCGTAGACATCTAGTGTGAGATAGAAATAGA AGAAAGATAAGTGATAGATATGATATAGATGAAATGTGATAGGAAGATAGCGAGATAGAGAGAAAAAAGTGAGTGCATGT AAGGGGTTACGTATCGAGATTGTTAAACTAAAGGTTTTACTGGCCTTAGTTTTGTGCAATTACTTTGTTATCATAGTTTG TGAAGACACAACAAAATAGGATGTTCACCATTTTGGATAGGCCTTTATTCTGATATGTGCTTGTTCTTACAGCATTTTCC CCCATAAAGGTGTCTGAATGACAATTGCATGATTATTCTGTTTCAGCTGTGTCTGGTGATGGGTTTCTAGCAAGAGATAT AGCGATTGAGAACAGGGCAGGGCCAGAGAAGCATCAAGCAGTTGCATTGAGAGTGAATGCAGACTTGACTGCATTTTACA AGTGTGCAATTTCTGGTTATCAAGACACTCTTTATGTTCACTCCTTTAGACAATTCTACAGAGAGTGTGACATTTATGGG ACCATAGACTTCATATTTGGAAATGCAGCAGTGGTTTTCCAAGAATGTGACATTGTATCCAGAACCCCATTGCCTGGCCA ATTCACTGTGATCACAGCACAAGGGAGAGATAATCCAGATGAAGATACTGGCATCTCATTCCAAAACTGCTCAGTTTTAG CGACGGAGGATCTTTACTCCAACTCTAGCAGCTTCAAAAGCTACCTTGGGAGGCCATGGAGGAACTACTCACGCACTGTT TACCTTGAGTCCTACATTGATGACTTTATTGACAAAAGGGGTTGGACCAAGTGGTCTTCTAATGATCAAGGATTGGAGTT GGACACACTGTATTATGGAGAGTATGAGAATTATGGACCTGGTTCAGGGGCAGATGGTCGTGTGCAATGGCTTGGGTACC ATTTCATGGATTACAATGATGCCTTTAATTTCACTGTCTCAGAGTTCATTTCTGGAGATGCTTGGCTTGGGTCTACTTCC TTTCCTTATGATGATGGGATTTGATTAATTTAACTTTAGTTTGTTACATTTCTTACTAATGTCACCTTCCTCAACCAGGA GAAAAAAAAATGTAAAATAAAAATTGTTCTCTCCAAAATTGTCACCTTTCTCAACTTAGGACTAAGACACCGAGCCTAGT TCCCAGAGTTAGGGTTAGAGTGAAGTTGTTGATTTGTCTTTTTCTTTCTTTTATTCACTACTTGTGTAGTTATTTGGCAA AATGGAATCGAAGGACTGCGCACTTAGCGTAATTTTTTTGGCGCATAGCGCCAATGAAACCTCTCTAGAAGGAAAGCTCG CGCTTAGCTCTAAGATCTCGCATTTAGTGCCAAAGAGGCAGAAAAAAAACCTAATTTTGAAGACTTTTCAGCTTTGAGCG GTGGAAAGCGGCATCGAGTGCCAGTTTGGTCACCTTAACATTTATTTAAGGTTAGAAATCATATTTTTTTTAAAGATCTT TCACCATTTTCTCTCAAAACTCATATCAAGGGAGCTGAAAAACTCTTGAAGGATCCTTGGGCTAGGCTGGAAGGAGTGAG GGGCGCCGGGCGCGTATCTATTCGCAATGGTATGGGGGCATTTACCCCTACTAAATAGTGGTCACCGGAAATGCAAAACC AACGATGCCTCCTCGTTCGGGACCATCATCATTGCAAATCTGAGTTTCTTGTTTCCATTGTTGCTCAACTGGGTTTGGCG ACGGCTCCGTCGCACGAGTACGGTCGCCTCTACCAAACTTCCGCAATTTACAATCACGGCAACAAAACTTTTAGCATGGA AGATATTTTCTGATATAACATAACTTTTTTTCTTTTTTGTGATTTAAC
CDS sequence (LotjaGi2g1v0214100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCCTCATCTCAAAAGCACTTCCTCTTTCTGCTTGTTCTTGCAATCTTCTTCTCACACACTTGTTCTGTCCACTC CATTAATGCTTCCACAACAACATTCCATTCCTTAAGATCTTTCTGCAGAACCACTCCATACCCAGAAGTTTGCTTCAATT CATTGAAGCTCTCCATATCAATAAACATAAGTCCAAACATCATCACCTACCTCCTTCACTCCCTCCAAACAGCAATATCT GAAGCCACCAAGCTCTCAAATCTATTCCAAAATGCTGGACACCCAAACATCATAGAGAAACAAAGAGGAGCAGTCCAAGA CTGCAAGGAACTCCACCAGTCCACCTTGTCTTCTCTGAAAAGATCATTAACTGGGATTGATCATCAATCCCCCAATTCAA AGAACCTTGTTGATGCAAGATCCTACCTCAGTGCAGCCCTCACCAACAAGAACACATGTCTAGAAGGCCTAGACTCTGCT TCTGGTACACTCAAACAGGTTCTGGTGGATTCTGTGATTAACACTTACAAGCATGTCAGTAATTCTCTTTCTATGCTTTC TAAGCAAGGAATTGAGGCTCCTCTCAAAGGACAGAAGAACACGGACCATGTGGAAGAATACGGAGTTCTTGTTGTGGCTG CAGATGGAACTGGGAACTTCAGCACAATCACAGAAGCAATAGCCTTTGCTCCAAATAATAGCATGTACAGGACAGTGATC TATGTGAAAGAAGGGATTTACCAGGAAAATGTGGAGATCCCAAGTTATAAGACTAACATTGTGATGCTTGGAGATGGAAG TGATGTCACTGTCATTACTGGTAACAGGAGCGTTGGTGATGGCTGGACCACTTTCAGATCTGCAACTCTAGCTGTGTCTG GTGATGGGTTTCTAGCAAGAGATATAGCGATTGAGAACAGGGCAGGGCCAGAGAAGCATCAAGCAGTTGCATTGAGAGTG AATGCAGACTTGACTGCATTTTACAAGTGTGCAATTTCTGGTTATCAAGACACTCTTTATGTTCACTCCTTTAGACAATT CTACAGAGAGTGTGACATTTATGGGACCATAGACTTCATATTTGGAAATGCAGCAGTGGTTTTCCAAGAATGTGACATTG TATCCAGAACCCCATTGCCTGGCCAATTCACTGTGATCACAGCACAAGGGAGAGATAATCCAGATGAAGATACTGGCATC TCATTCCAAAACTGCTCAGTTTTAGCGACGGAGGATCTTTACTCCAACTCTAGCAGCTTCAAAAGCTACCTTGGGAGGCC ATGGAGGAACTACTCACGCACTGTTTACCTTGAGTCCTACATTGATGACTTTATTGACAAAAGGGGTTGGACCAAGTGGT CTTCTAATGATCAAGGATTGGAGTTGGACACACTGTATTATGGAGAGTATGAGAATTATGGACCTGGTTCAGGGGCAGAT GGTCGTGTGCAATGGCTTGGGTACCATTTCATGGATTACAATGATGCCTTTAATTTCACTGTCTCAGAGTTCATTTCTGG AGATGCTTGGCTTGGGTCTACTTCCTTTCCTTATGATGATGGGATTTGA
Protein sequence (LotjaGi2g1v0214100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSSSQKHFLFLLVLAIFFSHTCSVHSINASTTTFHSLRSFCRTTPYPEVCFNSLKLSISINISPNIITYLLHSLQTAIS EATKLSNLFQNAGHPNIIEKQRGAVQDCKELHQSTLSSLKRSLTGIDHQSPNSKNLVDARSYLSAALTNKNTCLEGLDSA SGTLKQVLVDSVINTYKHVSNSLSMLSKQGIEAPLKGQKNTDHVEEYGVLVVAADGTGNFSTITEAIAFAPNNSMYRTVI YVKEGIYQENVEIPSYKTNIVMLGDGSDVTVITGNRSVGDGWTTFRSATLAVSGDGFLARDIAIENRAGPEKHQAVALRV NADLTAFYKCAISGYQDTLYVHSFRQFYRECDIYGTIDFIFGNAAVVFQECDIVSRTPLPGQFTVITAQGRDNPDEDTGI SFQNCSVLATEDLYSNSSSFKSYLGRPWRNYSRTVYLESYIDDFIDKRGWTKWSSNDQGLELDTLYYGEYENYGPGSGAD GRVQWLGYHFMDYNDAFNFTVSEFISGDAWLGSTSFPYDDGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| TIGRFAM | 5 | 189 | 185 | 1.6E-25 | ||
| PANTHER | 9 | 522 | 514 | 5.2E-260 | – | |
| TMHMM | 9 | 31 | 23 | - | – | |
| PANTHER | 9 | 522 | 514 | 5.2E-260 | – | |
| Phobius | 9 | 19 | 11 | - | – | |
| Phobius | 20 | 27 | 8 | - | – | |
| Phobius | 28 | 522 | 495 | - | – | |
| SMART | 33 | 185 | 153 | 1.0E-31 | ||
| Gene3D | 36 | 197 | 162 | 3.5E-13 | ||
| SUPERFAMILY | 38 | 187 | 150 | 1.44E-27 | ||
| Pfam | 38 | 185 | 148 | 1.6E-21 | ||
| CDD | 40 | 188 | 149 | 2.41133E-35 | – | |
| SUPERFAMILY | 209 | 519 | 311 | 3.77E-107 | ||
| Gene3D | 209 | 522 | 314 | 4.1E-126 | ||
| Pfam | 210 | 508 | 299 | 1.0E-137 | ||
| ProSitePatterns | 234 | 253 | 20 | - | ||
| ProSitePatterns | 353 | 362 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Enzyme inhibitor activity | Binds to and stops, prevents or reduces the activity of an enzyme. | ||
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi2g1v0214100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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