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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0214900 |
| Transcript ID | LotjaGi2g1v0214900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant hydroxyproline-rich glycoprotein; TAIR: AT4G13270.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q9SRN0|NHL1_ARATH NDR1/HIN1-like protein 1; TrEMBL-Plants: tr|A0A0S3TD54|A0A0S3TD54_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0214900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:66566531..66569312) extracted from Lotus japonicus Gifu genome v1.2.
ATTAAATCTTAAGCAAGGTTCGTATTTATTTGGCTGTATATGAAATACGTGGTGGTCCGGAGTCGTAGGACGCTGAAACA AAGGAACCATGACCGGGAAGGACGACTCTGTCCCTTACGAGCCCCTTCCCTACAACAATTACCCCCACCAAAACGTCGTC GTTCTCCTCCCAACCTACCACCACCACCACCGCCGCCGCAGCACAACCACCTCCTGCCTCCTCACCGCCCTCATCCTCCT CCTCTTCCTCACCTCCGCCGCCTTCTTCCTCTACCCATCCGACCCGGAAGTCCGCCTCATCCGAGTCGGAATCAACCACA TCGGGATCCGAGTCAACCCGAAGCCCGTCCTCGACCTCTCGTTCTCCGTCAGAGTTCAAGTTCGCAACAGGGACTTCTTC TCCCTATCCTACGACTCCCTCGCCGTCGCTGTTGGCTACCGCGGCCGCCAGCTAGGGTTTGTTTCGTCATCCGACGGTGG CAGAATTAGGGCGCGTGGATCGTCCTACGTCGACGCCGTGCTCACCGTTGATGGGTTTGAGGTCATCTATGATGCTTTCT ACTTGCTCCAAGACATTGCCAAGGGTGTGATTCCTTTCGATACTGAAACGCGTGTTGATGGGAAATTGGGGCTTTTCTTC TTCGATGTTCCCTTGAAGGTAGTAGTAGTACCTTTACTTGTGAATTTAAGTTCCATTTTTTTATTTGATTTGCTTGAAAG ATGCTAAAATTTGATGTGGGTATGTGAGAATTGGTGAATTTGAAGTTTGAAGGTACCTTGTGAATTTAAGTTGCTTTTTT TTTTTGATTCAATTTCGTTTGAGTTTGTCTGAATTTGCTTTGCTTGGAACATGCTTAATTGGGTAAAATTTGATGTGGGT ATTGGTGAATTTGATGAGGCTTTGACATTGTTTGAACTCTGAAGTTTCTTTTACTGTGACTTGGCTTGTGATTGTATTTA AGATTTTCATTTGTTGAGATGATGAATGTTAGTGCTCTGTTTTACTTTTAAACCTCTGTACCTGAAGTATTGTGTGTGCT GAATGCAGGCGACAGTGTCGTGCGAGGTGTATGTGAATATAAACAAGCAGACAATTGTACGGCAAAACTGCTATCCTGAG GTGAGAAATTTTGTTTCTTTTATTGAACTTTAGTTTGCAATGCAATTTCCTCTACATGTTTATTGCCAAGGAATCCATTT CAGCTATACATAGAGACTGTTCTTTGTCTGTTCCATTCTTTTGCTGAGTTGTGTAGTTAGTTCTGATTTATACTAGAGCA ACTGATTTGTTAGGTGAGATGAAATGTGATATATTATACATATCTCTTTTGTAACATTTGGGGGTAGCTCTTGGGAAATC AACCTTGCATTTTGGTTAAGATATCCTTTCGTCACTATCAAACACTTTATCTGATTTTAGTCTTTTATCATCATACTTCA GTTTCAACCCCATTTGGTAGAGGTTTAAAACCGTTTCAAAGTTAGTCTGATAAAGGAGAGGCACTATTGTAGAGTAATCT ACTGTGAAGCATTAGACGCTGCATAAACCCTAGAGAGGCATTTTATGTTAAAAGATTGAAACTGTAAGCCATAAAGGACC AAAGTGTCTAATTTTTCTATAAATTACTCCATGCTCTTCTGTCAATATTTTTAAAATTCAAACAAGCAAAGGTATAAAAT GCTATACTATATATATCACTGGCTAATGAAATCCTTTTCTGGCTGAATGCTTGAGGTGTAGAAGCATTCTCTTAAACTAG ACATGAAATTTTTTCCATGTTTTATGCTAGTTAAATTGAAGTGGGTATTTTTTCATTTCCAGGGTTGAATTTGTGCCTAT GTTTGTCAGCCTAGAAACTTATTGATGTTAACCATTATCCTTGTTTCTTAAATTCCCGGAGTGCTTTGCTCTGGGATTGA ACTTCTCCTAGAATCTGTTAGTTTTTATTCCGTTTCATCTACGAACTCTTAAACATGGTTTTGCTAGTTAAAGTTCAAAT TGAATTATATTTATGGGATTTATTTTAATGCATAGTTTGATTTATTATAGAAGATTTTGCTAATCCATTGTTGATTTGCT TCAGTCACTGGGAGATACATTGGCTCAGAGCGCAGATATTGGAGCTGAAGAGAACGCAGATGTTGGAGCTGAAGTGAACA CAGATATTGGAGCTGAAGATACCTGATATTGTACTATCAATCTTTAGCAACCTTTGTTTATAAAGTGGTGGTGGTGTTCT ATTCTTTGCGTTGCTTTTACTGTGCTTTATAAATTGTATATTGTATGGATCTCTCACGCCCTTGTAAAGTATTGAATTTA GCTCTAGTACGAGATAAAAGTGATGAAAATGGTCCCGGGGAGTTTTATCAGATATGAGAGGAGTGAACTGAATTTATCAA GTAGAAATGAAATGATACATGCATCGGGACTAAATTAACCAGCTAACTGATTAGCTGTGCAACTTTCTTAACTACATTAA CCAACTAACTAAACGTCATCTTGACAAATGTTTTAGTTGTGCTTGAGAACTAGTACAATATTAATGTCTTCTGCATTGAA ATGTCATGTTCTTTACAGAGTTTCCCAGTGACCCCAAAATATCTATTTTATATGTGCATACGTTTGATATTAGTGGAGTT TTCTTTTGTTAGTGCATTGTGGCTTGTATCCTTTTCCATTGGTTTGGTAGCACGAGATTTTCTTTTGTTCTACTATGAAA AAGTAATAATTTATGAAACGGGACAGTGGTTATAAACCATGCCAGTAGCTTTTCTCATAAAG
CDS sequence (LotjaGi2g1v0214900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCGGGAAGGACGACTCTGTCCCTTACGAGCCCCTTCCCTACAACAATTACCCCCACCAAAACGTCGTCGTTCTCCT CCCAACCTACCACCACCACCACCGCCGCCGCAGCACAACCACCTCCTGCCTCCTCACCGCCCTCATCCTCCTCCTCTTCC TCACCTCCGCCGCCTTCTTCCTCTACCCATCCGACCCGGAAGTCCGCCTCATCCGAGTCGGAATCAACCACATCGGGATC CGAGTCAACCCGAAGCCCGTCCTCGACCTCTCGTTCTCCGTCAGAGTTCAAGTTCGCAACAGGGACTTCTTCTCCCTATC CTACGACTCCCTCGCCGTCGCTGTTGGCTACCGCGGCCGCCAGCTAGGGTTTGTTTCGTCATCCGACGGTGGCAGAATTA GGGCGCGTGGATCGTCCTACGTCGACGCCGTGCTCACCGTTGATGGGTTTGAGGTCATCTATGATGCTTTCTACTTGCTC CAAGACATTGCCAAGGGTGTGATTCCTTTCGATACTGAAACGCGTGTTGATGGGAAATTGGGGCTTTTCTTCTTCGATGT TCCCTTGAAGGCGACAGTGTCGTGCGAGGTGTATGTGAATATAAACAAGCAGACAATTGTACGGCAAAACTGCTATCCTG AGTCACTGGGAGATACATTGGCTCAGAGCGCAGATATTGGAGCTGAAGAGAACGCAGATGTTGGAGCTGAAGTGAACACA GATATTGGAGCTGAAGATACCTGA
Protein sequence (LotjaGi2g1v0214900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTGKDDSVPYEPLPYNNYPHQNVVVLLPTYHHHHRRRSTTTSCLLTALILLLFLTSAAFFLYPSDPEVRLIRVGINHIGI RVNPKPVLDLSFSVRVQVRNRDFFSLSYDSLAVAVGYRGRQLGFVSSSDGGRIRARGSSYVDAVLTVDGFEVIYDAFYLL QDIAKGVIPFDTETRVDGKLGLFFFDVPLKATVSCEVYVNINKQTIVRQNCYPESLGDTLAQSADIGAEENADVGAEVNT DIGAEDT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 42 | 42 | - | – | |
| PANTHER | 14 | 213 | 200 | 1.4E-80 | – | |
| PANTHER | 14 | 213 | 200 | 1.4E-80 | – | |
| TMHMM | 40 | 62 | 23 | - | – | |
| Phobius | 43 | 62 | 20 | - | – | |
| SUPERFAMILY | 48 | 190 | 143 | 5.36E-11 | – | |
| Phobius | 63 | 247 | 185 | - | – | |
| SMART | 75 | 193 | 119 | 9.1E-5 | ||
| Pfam | 96 | 191 | 96 | 3.6E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Response to desiccation | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a desiccation stimulus, extreme dryness resulting from the prolonged deprivation of water. |
Expression pattern of LotjaGi2g1v0214900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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