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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0215600 |
| Transcript ID | LotjaGi2g1v0215600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat shock transcription factor; TAIR: AT3G24520.1 heat shock transcription factor C1; Swiss-Prot: sp|Q9LV52|HSFC1_ARATH Heat stress transcription factor C-1; TrEMBL-Plants: tr|A0A0L9VGU4|A0A0L9VGU4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0215600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:66743653..66746463) extracted from Lotus japonicus Gifu genome v1.2.
TTATATATTAAGGTGCTCCCTCATCCAAAAACGAAAAGAAAAGAAAATCTCACACTACTCACTGTAAACTCATCCATATT ATCAATATCCACCCTCTCTTTCTGTGTAGTTTCATCTTCTCCTTCTTGTTTTCTTAATGGGATGCTGATGGACCAGAACA ACAACACCAACCTTAACACTACCAACAACAACACCAACAACGATGTGATCATCGCACCGTTCATAATGAAGACTTACCAC ATGGTGAACGATCCCACCACCGATAACCTCATCAAGTGGGGCCCAGCTAACAACAGCTTCATCGTCCTCGACCCTCTTGA TTTCTCTCACTCTCTCCTCCCTGCTTTCTTCAAGCACAATAATTTCTCAAGCTTCGTTCGCCAGCTCAACACCTATGTAT GTTAGTCACTACTAGTTTTTTGAATTTTCTCAATTCAATAATCCATCACCACCCCACTTCCCTAAATCATTTTTTTCCAT CTGGGTATTGCTTATTTTTCTGTATATCAATCTAATTAAATTGGATTCTGAAATTTTAATTTTTTTTCTTTAATTTGGAG TTTAGGGTTTCAGAAAGGTGGATCCTGATCGGTGGGAGTTTGCAAACGAGTGGTTCCTTCGTGGGCAGAAGCATTTGTTG AAGAATATCACACGGCGGAAGCACGGTGGTGGCGGTGGTGGCGGTGGCGGTGGAAGGAATGGTCATGGTCATGGCCATGG CTATGATCATTATGGTTCGCATTTGGACTTGGAAGATGATGTTATGGTGATGGAGATTGCGAAGCTGAAGGAGGAGCAGA AAGCTTTGGATGCAGAGCTTCAAGGGATGAACAAGAGGTTGGAGACGACGGAGAAACGACCGCAGCAGATGATGGCTTTT CTCAGCAATGTCGTCGAGGATCCTCAGATTCTCTCGAGGATACTTCTCGAGAGGGAGAGGAAGCAGCAGCAGCTCGCTGA CAACAAGAAGCGCCGCCTCATACCGCCAACGACGGCGGCCTCTTCTTCCTCCTCCTCCGGCTTGGCGGTGACCAATTCCG TCAAGACGGAGTTCGAGGAAGACGAGGCGACGGTCGGTAACGTGATGTCCTCCTCGCCGGAGACAGGTTTTGAAATTGAA AACTCTCGCCGGGTGGCGGCGCCGCCGCCGGATTGGTGGGGGCAGAGGCGGGATGGCCAGCAGGGTTATTATGATTGTGT TGCCGCTCCGACGCCGTTGACGGTGGTGTCTCCGCCGGCGATGGGAGGAGCATTTTTAGGGTGGGAAGATAGGGAGAGCA TGGGGCGTGTGAGCATAATTAGTGAAATGGCGGCGGAGAATAGTTCGCTGCCACCTTGTCCGTTTTCGCTATTGGAAGGT TATGGTGTTAGTACTTCTTCCCAATACTGATTTTTAGACATCACCTCTTCCTAGCTTCAATTCACTTTATTTTTCTCCTT GTGGTATCTACCCTTTACTTCCACTAGATTTTCTCTTGGATTTTATTCTATGTATTAAAAATATATTCTTCACTACTTTT TTTTCTCACTTTCTTTGTATATACTTTGTGAGATTTTTTCTCTCCTCTTCAAGAATTGAATGAAAAGAGGAAAACATGAC AATAAATTTAATTGTTGGTGAATTCTGTGGTGCCTCTCGAAAAATGTGGGTGTGATGCCTTCATTTGGTCTATCAAATAG AAAAAAGACATGTGACAATTATTATACCAGATTTTTTATTTTCCATCAATTTCCATTCTTTTATAAATTCGAAATAATTT GTGATATTAATTTTGAGAAGGATTTTTTAGCAATTACTAGAAAGTTGCCTTTGGTTAATATGAGTTTTTAACATGAGTGA GATTTAGTTTGAAAATTGAAGAGATTGCTGGTTCATATTCTATTGTTCTTGGTTATCTTCAACACACCAATATTTTTTTT AAATGCCAAAATGAATTAAAGAATAGTAGCACTTAGCAGTGAGCAAAATACAAGGAATACAGTGGAAGGACACACCAATA CATGCCCAGAAAAATCCTCCACCAAACTTATATATGCAACCTTTCAGAACCCTTCCATTCCTAAAACCCAGCTACAAAAA GCAAAGAACAGAACCAAGAAAAGAACCCAGCGGAGGGACAAAAATGTTGAATCTTTTCTGAACTTGAAGAAGAAAAAAAA TCAATCTTTTCTCCCCTCAGAGAGCCACCAGGGAAACAAATAGTATAGACCCAAGGCCAGAGAAACGAAACAGAGAAAAA AGGGAGAAAAGGAAAAAAAGGGGGAAAAACAGAGAACATGATTCTCTCCCTCAGCAACAGCCCTATGGCATCGGTTTTGC AACCTTTCATGGCCGTGGCCGGCGTCTGTGGCGAAGACATCGGAAAAGCAACTCTGGGTTTCAGAGATTCGAACTCAAAG TTTGCATTTTTGGAGTGTTTTGGTGCGGCGGTGAGGACCCACCTGAGTGGGTTATTCAGTGACATGGTGAGGGACTGAGG GGAAAGAGGATTTAGGGTTGAAAGAGGAAGTGGGTGGCTTTGAGAAAGAGGATTTAGGGTTGCTGGTGAGGGAGAAATTC TTCTCTGCAACTTGTCTCTCCTCCTTCCCATGAGAAGAACAATTTTAATATCACTTGAATGGGAGAGAGGTTAAAAAATT ACTTTTACAGTTGTAACTGATTTAGTTAAGGACCAGTTAGCAATTATATAATTTTTTTTCTAAAACAATATTATTTAAAA ATCAATTCAGGATAAATGAAAAAGACACCTCACTTAATACATGTTTTGTTGCTATTGGTCCAACTAGGTAGATGCACCAT ACCTACATCTG
CDS sequence (LotjaGi2g1v0215600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGATGGACCAGAACAACAACACCAACCTTAACACTACCAACAACAACACCAACAACGATGTGATCATCGCACCGTT CATAATGAAGACTTACCACATGGTGAACGATCCCACCACCGATAACCTCATCAAGTGGGGCCCAGCTAACAACAGCTTCA TCGTCCTCGACCCTCTTGATTTCTCTCACTCTCTCCTCCCTGCTTTCTTCAAGCACAATAATTTCTCAAGCTTCGTTCGC CAGCTCAACACCTATGGTTTCAGAAAGGTGGATCCTGATCGGTGGGAGTTTGCAAACGAGTGGTTCCTTCGTGGGCAGAA GCATTTGTTGAAGAATATCACACGGCGGAAGCACGGTGGTGGCGGTGGTGGCGGTGGCGGTGGAAGGAATGGTCATGGTC ATGGCCATGGCTATGATCATTATGGTTCGCATTTGGACTTGGAAGATGATGTTATGGTGATGGAGATTGCGAAGCTGAAG GAGGAGCAGAAAGCTTTGGATGCAGAGCTTCAAGGGATGAACAAGAGGTTGGAGACGACGGAGAAACGACCGCAGCAGAT GATGGCTTTTCTCAGCAATGTCGTCGAGGATCCTCAGATTCTCTCGAGGATACTTCTCGAGAGGGAGAGGAAGCAGCAGC AGCTCGCTGACAACAAGAAGCGCCGCCTCATACCGCCAACGACGGCGGCCTCTTCTTCCTCCTCCTCCGGCTTGGCGGTG ACCAATTCCGTCAAGACGGAGTTCGAGGAAGACGAGGCGACGGTCGGTAACGTGATGTCCTCCTCGCCGGAGACAGGTTT TGAAATTGAAAACTCTCGCCGGGTGGCGGCGCCGCCGCCGGATTGGTGGGGGCAGAGGCGGGATGGCCAGCAGGGTTATT ATGATTGTGTTGCCGCTCCGACGCCGTTGACGGTGGTGTCTCCGCCGGCGATGGGAGGAGCATTTTTAGGGTGGGAAGAT AGGGAGAGCATGGGGCGTGTGAGCATAATTAGTGAAATGGCGGCGGAGAATAGTTCGCTGCCACCTTGTCCGTTTTCGCT ATTGGAAGGTTATGGTGTTAGTACTTCTTCCCAATACTGA
Protein sequence (LotjaGi2g1v0215600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLMDQNNNTNLNTTNNNTNNDVIIAPFIMKTYHMVNDPTTDNLIKWGPANNSFIVLDPLDFSHSLLPAFFKHNNFSSFVR QLNTYGFRKVDPDRWEFANEWFLRGQKHLLKNITRRKHGGGGGGGGGGRNGHGHGHGYDHYGSHLDLEDDVMVMEIAKLK EEQKALDAELQGMNKRLETTEKRPQQMMAFLSNVVEDPQILSRILLERERKQQQLADNKKRRLIPPTTAASSSSSSGLAV TNSVKTEFEEDEATVGNVMSSSPETGFEIENSRRVAAPPPDWWGQRRDGQQGYYDCVAAPTPLTVVSPPAMGGAFLGWED RESMGRVSIISEMAAENSSLPPCPFSLLEGYGVSTSSQY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 18 | 117 | 100 | 3.6E-36 | ||
| PANTHER | 19 | 350 | 332 | 2.8E-96 | – | |
| PANTHER | 19 | 350 | 332 | 2.8E-96 | ||
| SMART | 23 | 116 | 94 | 2.5E-53 | ||
| SUPERFAMILY | 25 | 116 | 92 | 8.84E-34 | ||
| Pfam | 27 | 116 | 90 | 1.3E-28 | ||
| PRINTS | 27 | 50 | 24 | 5.5E-18 | ||
| PRINTS | 65 | 77 | 13 | 5.5E-18 | ||
| ProSitePatterns | 66 | 90 | 25 | - | ||
| PRINTS | 78 | 90 | 13 | 5.5E-18 | ||
| MobiDBLite | 114 | 137 | 24 | - | – | |
| Coils | 156 | 183 | 28 | - | – | |
| MobiDBLite | 212 | 242 | 31 | - | – | |
| MobiDBLite | 225 | 242 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi2g1v0215600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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