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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0225600 |
| Transcript ID | LotjaGi2g1v0225600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT5G19730.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q8VYZ3|PME53_ARATH Probable pectinesterase 53; TrEMBL-Plants: tr|A0A0S3TDC1|A0A0S3TDC1_PHAAN Pectinesterase; Found in the gene: LotjaGi2g1v0225600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:68274175..68277623) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAACCACCAAAATTTTCTACAAGAAAATGTTTTTATACAGAAAAAGTGCAACCTGTCCTGTGGTTCAGATTGTCTCT CTTTACATGGGTGTCAGTGGAAGGACCCGTGACCAAATACTCTGTCACTGCTTCAACTTCCACCTAAAAGGCCAAAATTA TGTGACCATGACTAGTATATAAGCCATGGCAGGAACCAATAACTATACAACCCTTCACATTCCAAATACCATTGTTCACC TTTCTTTTTCATTTCACATTCTTTCTGAGAATGTCAAACTTGCATTGCATTTTCAGCTTGTTAGCAGTTCTTCTTCTTCT GATGCAAAATCCCAGTGGAATTCACTGCCATACCAAGGGAATTAGGCCACGACGTTCTGTAGGGAATGGGCTATCGAACA ATATGTCTAGAGTACTGGAATCAGAAAAGCAATTCATGAAATGGGTTGATTTTGTTGGTAGCCTCAAACATACAGTTTTT AAGGCTGCAAAGAATAAGCTGTTTGCTTCTTACACTTTGTACGTTGATAAGAATCCTGCTGCTGGAGATTTTACATCAAT TCAAGAAGCCATTGATTCCCTTCCATCCATCAATACTGTCAGAGTGGTCATCAAGGTCCATGCAGGGGTTTACTCGTGAG TACTAATAGTACTATTAGCATGATTTGATGAGCATATAATTCATTAGAATCAATTCTGACACCCAAAAATTAGTTATAAG TTCTCGTCAGAATTGATTTTGGTTTATAGTCAATTATAGAAAGATTTCACCACATGCTATATATTTCTTGCACTTCCAAT TGAGTTATTGAACTCTACCACATTCATGTCCTTTTGCTTTATACCCTTTATTTTTTGTTGTGGCATTTTCAATAATTTCC CATTTGTTCATCAAATTGTGTGTTTGGATTAATGTAGAGTACACAATTCAAAGTGTGAAAATTCTAAAAATAGCATTATT AGGCTTTTTCACTCAAAGTGATTATGTAGCTTGGAAACAGGCTACAAGACATGGATTTTGGTGTTTGTCTGCATTTGGGA TTATATTATGTGTTTTTTTAGTTTGCTCTTACAATGATGTTGGAAATCGGTAACAAAAACAGTTTATGTTTGTTCTTTTG TCTTTTTTCTTCTTCCAAGACTCAATCATTCAAATTCCAAGAATTGGTGTTTGACTGAAGAAGATTTTGTAGTTGATGAA CCTTCCTCTCTTTTAGCTCATGTTGCATTTTGCAATTTTTCCACTATCTTAATTATTGTTGAGAATTGTGAACTGCATTT GAATGGAATTCACTGATTTTCTCCCTGCATTTGTGTGTGTATCATGTCCAGGGAGAAAGTTTACATTCCCCCTTTGAAAT CTTTCATAACCATAGAAGGAGATGGTGCAGATAAAACCATTGTTCAATGGGGTGACACTGCTCAAACACCAGGCCCTCGA GGGCAGCCACTTGGAACATATGGCTCAGCAACTTTTGCAGTGAACTCACTCTATTTTATTGCCAAGAACATCACATTCAA AGTATGTAAACAAGCCCCTTCTTCTGCTTCAACATAAATTTGGCTAATTGACTCCGGTCATGTTTGGATGCACAATAAAA AACCATGATGTACCGAAATCTTGGTCGACAAAACCAACTTTGCTTAGCTTTTGCTTTTGTTCACCGTAAATTTAGATTCA GTGTGGTTTTCTACAGTGTATTATAACATGCATTCTATCTATGTGTGGGGTTTACAAGAAATTAATATTGTGAATACAGA ACACTACCCCTGTTCCTGCACCAGGAGCAATGGGAAAGCAGGCAGTAGCATTCAGGATTTCAGCAGACACAGCTGCATTC CTAGGTTGCAAATTCTTAGGAGCACAGGACACACTTTATGATCATTTGGGCAGGCATTATTATAAGGATTGTTACATTGA GGGTTCTGTTGATTTCATATTTGGCAATGCTCTCTCACTCTATGAGGTTAGATATTCTGTCTACAATTAATAGCTCTTAG CTTGAGTTATATTTTAAATTGCTTTTGTGGTTGCGGTTGCGGCAGTATCTCGGAATTGCACATAAATGTTGGGTGTTGCA GCTGCAATTATGGTCAGATGCCTATGAGTAAACTTCAAAACTCGTTACATTGTGGCCGCAATTGCAGTTGCGGACCGAAA TTTAAAACTTCTGGATGTTGAAGAATTTTTATTTGATAATGAAATTTGTGACACTAATAGTACTATACTATAGGGATGTG AGGTGCATGCCATAGCACCAAATACAGGCGCACTAACAGCTCAAGGAAGGAGCAGGATGACGGAGGACACGGGGTTCTCA TTTGTGAACTGTAAGGTCACGGGGTCAGGGGCACTGTACCTTGGAAGGGCTTGGGGTCCCTTTTCAAGAGTGGTCTTTGC TTATACCTATATGGACAACATCATCATTCCCAAAGGCTGGTATAATTGGGGTGACCCTAACCGTGAAATGTAAGTCCATT TTCTACCCTCTCGTCTCTTTCTCATTGTCACACATATATGGAGTATATGTTGAGAAGTCTTACATTAATTATAGATATAG TTTAGATAACTTTCATATATGGAAATATAATCTTCATTTCTTGTAGCTGAAGTCTAATATGCTATAACTACTCTCTCTAA AATGATACTCAAACATTTCTACTGTCATCTAAAATTGATTGGTTTTACTAAACCAAACACACACTAAACATTTTATGTGA AAAGAATATATGAGTCAGTTCTGTACTTTTGTCTACTTCTGAAGAACTTTAACCCCTACTGCACTATGAGAGTGAGAATG GGGCGGTGCCACTCATTGGATATCTTAATTATACTGTCAAGTGTCAATGTCTATATATAGAATAAGGAATTACAGGACCA AATTAACTTCATGTCTCTGTTTGCTAATATAGATAAGGCATATATATAGCCGCATGCATGCGCATAGCTTGACACAATAT ATCTTGTTATATGCTTGACAGCTATAGTATAGAGTATAGGCACATTGGCATGCGCATTAATTGAGTTGGTACACATTTGT TCTAATGTTTTTATATTTTATTAATTGGACCCATCACCACCACTACCACCACCAGGACTGTGTTTTATGGACAGTACAAA TGCACGGGACCTGGAGCAAGCTTTGCAGGGAGAGTCTCATGGGCAAGAGAACTCACTGATGAGGAAGCTGGACCTTTTCT TTCACTTAGTTTTATTGATGGGCCTGAATGGGTCAAATTTTAGTTTCAATACAACCACACAGATTGTTTATTGATTTAAT TAGGAAAATTTTGATGTGTACATGTAATAATATATTATGAACTCTAATATGAGAGCAATAATTCATGCATGCTTATACTA ACTTGTATCTGTGACAAGCATGCATGGCTGATATTATGAAAGATATGAATTTATAATATTTATAATAAAAAGTTAAATTA AACATTTAA
CDS sequence (LotjaGi2g1v0225600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAAACTTGCATTGCATTTTCAGCTTGTTAGCAGTTCTTCTTCTTCTGATGCAAAATCCCAGTGGAATTCACTGCCA TACCAAGGGAATTAGGCCACGACGTTCTGTAGGGAATGGGCTATCGAACAATATGTCTAGAGTACTGGAATCAGAAAAGC AATTCATGAAATGGGTTGATTTTGTTGGTAGCCTCAAACATACAGTTTTTAAGGCTGCAAAGAATAAGCTGTTTGCTTCT TACACTTTGTACGTTGATAAGAATCCTGCTGCTGGAGATTTTACATCAATTCAAGAAGCCATTGATTCCCTTCCATCCAT CAATACTGTCAGAGTGGTCATCAAGGTCCATGCAGGGGTTTACTCGGAGAAAGTTTACATTCCCCCTTTGAAATCTTTCA TAACCATAGAAGGAGATGGTGCAGATAAAACCATTGTTCAATGGGGTGACACTGCTCAAACACCAGGCCCTCGAGGGCAG CCACTTGGAACATATGGCTCAGCAACTTTTGCAGTGAACTCACTCTATTTTATTGCCAAGAACATCACATTCAAAAACAC TACCCCTGTTCCTGCACCAGGAGCAATGGGAAAGCAGGCAGTAGCATTCAGGATTTCAGCAGACACAGCTGCATTCCTAG GTTGCAAATTCTTAGGAGCACAGGACACACTTTATGATCATTTGGGCAGGCATTATTATAAGGATTGTTACATTGAGGGT TCTGTTGATTTCATATTTGGCAATGCTCTCTCACTCTATGAGGGATGTGAGGTGCATGCCATAGCACCAAATACAGGCGC ACTAACAGCTCAAGGAAGGAGCAGGATGACGGAGGACACGGGGTTCTCATTTGTGAACTGTAAGGTCACGGGGTCAGGGG CACTGTACCTTGGAAGGGCTTGGGGTCCCTTTTCAAGAGTGGTCTTTGCTTATACCTATATGGACAACATCATCATTCCC AAAGGCTGGTATAATTGGGGTGACCCTAACCGTGAAATGACTGTGTTTTATGGACAGTACAAATGCACGGGACCTGGAGC AAGCTTTGCAGGGAGAGTCTCATGGGCAAGAGAACTCACTGATGAGGAAGCTGGACCTTTTCTTTCACTTAGTTTTATTG ATGGGCCTGAATGGGTCAAATTTTAG
Protein sequence (LotjaGi2g1v0225600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNLHCIFSLLAVLLLLMQNPSGIHCHTKGIRPRRSVGNGLSNNMSRVLESEKQFMKWVDFVGSLKHTVFKAAKNKLFAS YTLYVDKNPAAGDFTSIQEAIDSLPSINTVRVVIKVHAGVYSEKVYIPPLKSFITIEGDGADKTIVQWGDTAQTPGPRGQ PLGTYGSATFAVNSLYFIAKNITFKNTTPVPAPGAMGKQAVAFRISADTAAFLGCKFLGAQDTLYDHLGRHYYKDCYIEG SVDFIFGNALSLYEGCEVHAIAPNTGALTAQGRSRMTEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIP KGWYNWGDPNREMTVFYGQYKCTGPGASFAGRVSWARELTDEEAGPFLSLSFIDGPEWVKF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| PANTHER | 11 | 379 | 369 | 3.7E-215 | – | |
| PANTHER | 11 | 379 | 369 | 3.7E-215 | – | |
| Phobius | 18 | 26 | 9 | - | – | |
| Phobius | 27 | 381 | 355 | - | – | |
| Gene3D | 78 | 381 | 304 | 2.3E-104 | ||
| SUPERFAMILY | 79 | 380 | 302 | 2.01E-92 | ||
| Pfam | 91 | 375 | 285 | 1.5E-75 | ||
| ProSitePatterns | 238 | 247 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi2g1v0225600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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