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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0230700 |
| Transcript ID | LotjaGi2g1v0230700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phospholipase A2 family protein; TAIR: AT4G29460.1 Phospholipase A2 family protein; Swiss-Prot: sp|Q9M0D7|PLA2C_ARATH Phospholipase A2-gamma; TrEMBL-Plants: tr|G7KJ78|G7KJ78_MEDTR Phospholipase A2 family protein; Found in the gene: LotjaGi2g1v0230700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:69012802..69014611) extracted from Lotus japonicus Gifu genome v1.2.
CAACGATCTAGAGGCTGGTTTGCTAATTTCAGCTCCCAATCCCAAATAAAACAACATCGTTTTTTTTTTCCTTGAAACTA TACAAAGAACTAAGAATAAGAAACGGACAGACATCAAGACCCTTTCTCCTTTACGCCCTCAATGGCTGCCTGCATTATCT CTCGCGCCACCGCCACATTCGTTCTATTATCCCTGGTTCTCGCCGTCGTCCTCCGCTCCTCCTATGCCACCGATGTAAGT CATCTCTTCTCTCACATTGTTCAGAAATTAGGATTGTTGTTAATATGGTTGGATTTTGAAGCATAAACATATAACATATG AGAAATTTGGCCATTAATTTTTCTTAATTAACTTTGGAGGACAGGCCACATGCAGCAGGAATTGCATTGCAGAGCATTGT GATAGTAAGATTAATTCTTTGTAGCATTAACATCTTTTCCTTTGCTTATTGGTTGTCACATTTTATTTGTTTCAATGTTT TTTAGCTCCATTTCAAAAAAAAAAGGTTTTTTTTGGCTCAAATTCACAAAAGCTTAAATTATTGAGTAAGAACAAATGAA TGATTTTATATTATTATTTTAAACACGCTCTCTCACGCAATGACTCACTTGAGCTTTAGCTTGTGAAAATGCACATATCC ACCTACTATGTGCTGAAATTCTACTTTCTAATATAATAATACTATGGGGCGGTAAAGATTAAACTCTAGATCACTTTGTC GCACAGGTTCTATTACTATGTCAAGCAAGTAATTATCTCAAAAGCTTCGGTTGTTCAATAAGTGTTACATGAATAATTAT ATATTATTATTTATAACGGTTGACATAAGTTACTTTTGTTGTTGTTTCATTTCAGCGTTGGATATTAAATACGGCAAGTA TTGCGGGGTAGGTTATTTCGGTTGTCCTGGTGAGAAACCATGCGATGGGCTTGATGCTTGTTGTATGGGCCATGACGAAT GTGTCACCGTATTCGGTACTCTTTCTATTCTTTGCTCCTACATTCTTTGTGTGCACCCGTGTTTATATCAACGTTGTTAG AATTGATTATAAATATAATTAATTTTATTAAAACTAATTAGGTAATAAAAAATAAATTGAAAGTGAAATAATTTGTAATT GGATGTATGAGAAATACCGGTTAGTTAGTGTAAATGTATGTTTGTGCAAAAAATGCATACCATGATTGTTTCTTTGATGA GTTTAATGGATATGCACTGACAGTGTAAAATAGTTTTACACAGTCATCCAATCAAAGCATGTCACATAGGAGAGATAATT ACATTTGACTTTAATTTTAATTAAAAGAATAAGATATTTTCTGATTTGGCGAAATTCAATTAGATGTCTGTGTAAAATTA TTTTACACTCTCAGTGTATATCCATTAAACTCTTCTTTGATTCTCCTTTACATTTTCTATTAGCTTGATTATTGAGGCCT CCATCTCGAGGATTGCTTTAAATTGATCACGAAACATGGTTTTACAGGAATGACTCACGTCAAATGTCATAAGAGATTAA AGAACTGCCTAATCAGGGAGCAGAAAACTAGGAATGTTGGATTTTCTAAGGAGTGTCCCTACAATAGAGCTGCGCCTACT ATGATAAGAGGCATGGACTTGGCCATTTTGCTGAGCCAATTGAATGAAACATTTCATGATTAGTTCTAACAAAACTTTAA CCGTTTAGTAAATGTTGTACACTATTTGTCATTAACAAAGTTTTCTAGATTCATGAAATGTTGATCTTATATGATGCACT TGTTGAGCCTGGCTACGCCAATTTATTCTAATATGTTGTAATTTAATTTA
CDS sequence (LotjaGi2g1v0230700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCCTGCATTATCTCTCGCGCCACCGCCACATTCGTTCTATTATCCCTGGTTCTCGCCGTCGTCCTCCGCTCCTC CTATGCCACCGATGCCACATGCAGCAGGAATTGCATTGCAGAGCATTGTGATACGTTGGATATTAAATACGGCAAGTATT GCGGGGTAGGTTATTTCGGTTGTCCTGGTGAGAAACCATGCGATGGGCTTGATGCTTGTTGTATGGGCCATGACGAATGT GTCACCGTATTCGGAATGACTCACGTCAAATGTCATAAGAGATTAAAGAACTGCCTAATCAGGGAGCAGAAAACTAGGAA TGTTGGATTTTCTAAGGAGTGTCCCTACAATAGAGCTGCGCCTACTATGATAAGAGGCATGGACTTGGCCATTTTGCTGA GCCAATTGAATGAAACATTTCATGATTAG
Protein sequence (LotjaGi2g1v0230700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAACIISRATATFVLLSLVLAVVLRSSYATDATCSRNCIAEHCDTLDIKYGKYCGVGYFGCPGEKPCDGLDACCMGHDEC VTVFGMTHVKCHKRLKNCLIREQKTRNVGFSKECPYNRAAPTMIRGMDLAILLSQLNETFHD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 8 | 8 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 29 | 29 | - | – | |
| SignalP_EUK | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 29 | 29 | - | – | |
| TMHMM | 5 | 24 | 20 | - | – | |
| Phobius | 9 | 24 | 16 | - | – | |
| PANTHER | 9 | 139 | 131 | 1.5E-55 | ||
| PANTHER | 9 | 139 | 131 | 1.5E-55 | – | |
| Gene3D | 17 | 142 | 126 | 2.3E-31 | ||
| Phobius | 25 | 29 | 5 | - | – | |
| Phobius | 30 | 142 | 113 | - | – | |
| SUPERFAMILY | 49 | 107 | 59 | 2.68E-16 | ||
| ProSitePatterns | 73 | 80 | 8 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phospholipase A2 activity | Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate. | ||
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Biological process | Phospholipid metabolic process | The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester. | ||
| Biological process | Lipid catabolic process | The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. | ||
| Biological process | Arachidonic acid secretion | The controlled release of arachidonic acid from a cell or a tissue. |
Expression pattern of LotjaGi2g1v0230700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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