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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0230900 |
| Transcript ID | LotjaGi2g1v0230900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1-aminocyclopropane-1-carboxylate synthase; TAIR: AT4G26200.1 1-amino-cyclopropane-1-carboxylate synthase 7; Swiss-Prot: sp|Q9STR4|1A17_ARATH 1-aminocyclopropane-1-carboxylate synthase 7; TrEMBL-Plants: tr|A0A151RGL0|A0A151RGL0_CAJCA 1-aminocyclopropane-1-carboxylate synthase 7; Found in the gene: LotjaGi2g1v0230900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:69029402..69032142) extracted from Lotus japonicus Gifu genome v1.2.
CCATATATTTTCTGTGCGGATCTGGCAGTAAGGTATAACAGTTGTCACAAGTCGCCACTGATAAACTATTCCTGTAAAAG CCTAAAAGGTGAACTAGTTCTGATTTGCTTACACTTGGGAATCATCAATAATTTATATATTTTTCTCTGTTGTTTGTGCT GAACGCGCCAGCCAAGTTGAAAGGGCCTTTTTCTCTGTCTCAATCCTCAAAGCCTATATATAGAGGACCCTTAAACAAAC CTTTTCATCATTCAATTCAACGCTCTCTTCATTCCTCAAGTTCTCTAGCTCTCTCTCTCTTACCCACATCAGCTTTCTGT ACATATTTTTGACAAGGAAGCTAGTTATGGGTATTGAGATTGAGCAACCTTGTGTGGAGCTTTCAAACATTGCTACCTCT GAAACTCATGGGGAAAACTCTCCCTATTTTGCTGGATGGAAAGCTTATGATGAAAACCCCTATCATGAGTTAACTAATCC CTCTGGTGTTATCCAAATGGGGTTGGCAGAGAATCAAGTAAGTACACATAAAAAGCCACAAGGCAACAAGTAAAAGTCCA TTTTTCAACAACAACTTATAGTAATACTCACTGACTCATTTTTCATTGGTCAGGTTTCATTTGATTTGCTTGAGAAGTAC TTGGAAGAACACTCTGAGGCATCCACATGGGGAAAAGGAGCTCCTGGTTTCAGAGAGAATGCTTTGTTTCAAGACTATCA TGGACTTCAATCCTTCAGAACAGCAATGGCTAGCTTCATGGAACAAATAAGAGGAGGGAGAGCCAAATTTGACCCTGCAA GAGTGGTCCTCACTGCTGGTGCTACTGCTGCCAATGAACTCTTAACTTTCATCCTAGCAAATCCAGGAGATGCTTTACTT GTTCCAACCCCTTACTATCCTGGGTAAGAATCTCTTACCCATTTCATTCTTTAATCTATTTACCATAATCAATTATGCCT CACTCATAAGAACTATCCTACCAAATATACCTGGTTTAGAGATCAATTTATTTTTTCTCAAAATCAATCCTGACACACTT AGAAGCTTCTCACTAAAATTGGTTTTGGCTTTTGAATGAGTTGTAGAAGAATTTTCAAACATATTTGAGGTATAAAAAAC AGTTACGATACTCAGACATACAAACAGTGCAGATATCCAGCGAACACCCAATTTTCTCTCTATCTATTTCTTCTATCAAA TATCACATTAATTACTTTCCTCTTTTCTCTTCTTTTCTAACTCTGTGTCTATTGTGTCTATTGAATGTCTAGTGAAAAGT TGCTACTTGATTAAAAATTAAAAATTCAAACCTAATCTTCTTTGGAACTTGAAAGCGCGTAGCAGATTGCTTTATGTGCA AGCTATACAATGATCAATATTACAAGCACAATATAACATGTCCAATTGGCATGAAACTATAAATATGTGTATTAAAACTA AGACACATACTGAATTATTTTCTCTGGCAGATTTGACAGAGATTTAAGGTGGAGAACTGGAGTCAACATAGTTCCAATCC ACTGTGACAGCTCAAACAATTTTCAGATCACCCTTGAAGCTTTAGAAGCTGCATACAAAGAAGCAGAAGCCATGAACTTC AAAGTGAGAGGTGTACTAATCACAAACCCATCAAACCCACTAGGAATAACAATTCAACGCTCAGTCCTAGAGGATCTTTT CGACTTCGTCACACGCAAGAACATCCATCTTGTCTCAGATGAAATCTATTCGGGCTCCGTTTTCTCCGCCACAGAATTCA CAAGTGTGGCGGAGATTCTCGAAGCCCGCAAATACAAAGAGGCCGAGCGTGTCCACATTGTTTATAGTCTCTCCAAGGAT CTCGGTCTCCCCGGATTCCGAGTTGGGACTATTTACTCGTACAACGACAAGGTCGTGACAACCGCTCGGAGGATGTCAAG TTTCACCTTGATCTCCTCTCAGACTCAGCACTTGTTGGCTTCCATGTTGTCCAATGAGGAGTTCACTCAGAACTACATTG AGACAAACAGAGTGAGGCTGAGAAAGAGGTACAAAATGATCATTGAAGGTTTGCGAAGCGCGGGGATCGAGTACTTGGAA GGGAATGCAGGGTTGTTTTGCTGGATGAATCTGAGTCCTCTTTTGGAGGAACCAACAAGGGAAGGTGAATTGAAGCTATG GGATGCTGTTTTGCATGAAGTGAAGCTGAATATCTCTCCAGGATGCTCTTGCCGTTGCGACGAACCGGGTTGGTTCAGGG TTTGCTTTGCAAACATGAGTGAGCAGACGCTGGAAATTGCACTAAAGAGAATACGTAAGTTCATGGAAAGAATAAGGACA CAAAAGAAATAGATATATTACTACATTTTTTTTTTTATCTTTAACAGTGTCTCCAAAATGGTTGTGAAACTGTAGCGGTT ATTATCAGTCTTTTTTTCCAAATGGTTGTGGCCATTTTGACAAATTCTTTATTCGGGTGACAGCAAAGTCAAAGTCATGT CCTGAAAGCACATAGTGTAAATCTGATGATTCTATTGAAGTGTATCATCAATCCTTGTTTGCTTGCTTAATTTAAGCAAG TTCTGCCGTGTAAGTCATTTGTATCATTAGAGTGGATTACCATCAATGAATGAAATTTCAAATTTGTCATTACATTATGA AGAATATTTGTGTTATGCGAAGTATCTGTAGACATCTTGAACTTTTTTGATTGGTTGTGTTGTAAACCAATTACCAATGT GCTCTTGAATTGTTAATTATC
CDS sequence (LotjaGi2g1v0230900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTATTGAGATTGAGCAACCTTGTGTGGAGCTTTCAAACATTGCTACCTCTGAAACTCATGGGGAAAACTCTCCCTA TTTTGCTGGATGGAAAGCTTATGATGAAAACCCCTATCATGAGTTAACTAATCCCTCTGGTGTTATCCAAATGGGGTTGG CAGAGAATCAAGTTTCATTTGATTTGCTTGAGAAGTACTTGGAAGAACACTCTGAGGCATCCACATGGGGAAAAGGAGCT CCTGGTTTCAGAGAGAATGCTTTGTTTCAAGACTATCATGGACTTCAATCCTTCAGAACAGCAATGGCTAGCTTCATGGA ACAAATAAGAGGAGGGAGAGCCAAATTTGACCCTGCAAGAGTGGTCCTCACTGCTGGTGCTACTGCTGCCAATGAACTCT TAACTTTCATCCTAGCAAATCCAGGAGATGCTTTACTTGTTCCAACCCCTTACTATCCTGGATTTGACAGAGATTTAAGG TGGAGAACTGGAGTCAACATAGTTCCAATCCACTGTGACAGCTCAAACAATTTTCAGATCACCCTTGAAGCTTTAGAAGC TGCATACAAAGAAGCAGAAGCCATGAACTTCAAAGTGAGAGGTGTACTAATCACAAACCCATCAAACCCACTAGGAATAA CAATTCAACGCTCAGTCCTAGAGGATCTTTTCGACTTCGTCACACGCAAGAACATCCATCTTGTCTCAGATGAAATCTAT TCGGGCTCCGTTTTCTCCGCCACAGAATTCACAAGTGTGGCGGAGATTCTCGAAGCCCGCAAATACAAAGAGGCCGAGCG TGTCCACATTGTTTATAGTCTCTCCAAGGATCTCGGTCTCCCCGGATTCCGAGTTGGGACTATTTACTCGTACAACGACA AGGTCGTGACAACCGCTCGGAGGATGTCAAGTTTCACCTTGATCTCCTCTCAGACTCAGCACTTGTTGGCTTCCATGTTG TCCAATGAGGAGTTCACTCAGAACTACATTGAGACAAACAGAGTGAGGCTGAGAAAGAGGTACAAAATGATCATTGAAGG TTTGCGAAGCGCGGGGATCGAGTACTTGGAAGGGAATGCAGGGTTGTTTTGCTGGATGAATCTGAGTCCTCTTTTGGAGG AACCAACAAGGGAAGGTGAATTGAAGCTATGGGATGCTGTTTTGCATGAAGTGAAGCTGAATATCTCTCCAGGATGCTCT TGCCGTTGCGACGAACCGGGTTGGTTCAGGGTTTGCTTTGCAAACATGAGTGAGCAGACGCTGGAAATTGCACTAAAGAG AATACGTAAGTTCATGGAAAGAATAAGGACACAAAAGAAATAG
Protein sequence (LotjaGi2g1v0230900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGIEIEQPCVELSNIATSETHGENSPYFAGWKAYDENPYHELTNPSGVIQMGLAENQVSFDLLEKYLEEHSEASTWGKGA PGFRENALFQDYHGLQSFRTAMASFMEQIRGGRAKFDPARVVLTAGATAANELLTFILANPGDALLVPTPYYPGFDRDLR WRTGVNIVPIHCDSSNNFQITLEALEAAYKEAEAMNFKVRGVLITNPSNPLGITIQRSVLEDLFDFVTRKNIHLVSDEIY SGSVFSATEFTSVAEILEARKYKEAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQHLLASML SNEEFTQNYIETNRVRLRKRYKMIIEGLRSAGIEYLEGNAGLFCWMNLSPLLEEPTREGELKLWDAVLHEVKLNISPGCS CRCDEPGWFRVCFANMSEQTLEIALKRIRKFMERIRTQKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 439 | 437 | 1.8E-260 | – | |
| PANTHER | 3 | 439 | 437 | 1.8E-260 | – | |
| SUPERFAMILY | 20 | 434 | 415 | 1.63E-102 | ||
| Gene3D | 37 | 427 | 391 | 1.1E-144 | ||
| Pfam | 49 | 428 | 380 | 1.8E-96 | ||
| PRINTS | 51 | 77 | 27 | 3.2E-95 | – | |
| Gene3D | 71 | 322 | 252 | 1.1E-144 | ||
| PRINTS | 83 | 99 | 17 | 3.2E-95 | – | |
| CDD | 84 | 430 | 347 | 6.25058E-63 | – | |
| PRINTS | 120 | 140 | 21 | 3.2E-95 | – | |
| PRINTS | 142 | 163 | 22 | 3.2E-95 | – | |
| Coils | 175 | 195 | 21 | - | – | |
| PRINTS | 196 | 220 | 25 | 3.2E-95 | – | |
| PRINTS | 232 | 255 | 24 | 3.2E-95 | – | |
| PRINTS | 267 | 291 | 25 | 3.2E-95 | – | |
| ProSitePatterns | 273 | 286 | 14 | - | ||
| PRINTS | 299 | 322 | 24 | 3.2E-95 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. | ||
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
Expression pattern of LotjaGi2g1v0230900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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