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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0232600 |
| Transcript ID | LotjaGi2g1v0232600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB-like transcription factor family protein; TAIR: AT5G56840.1 myb-like transcription factor family protein; Swiss-Prot: sp|Q9FKF9|M5162_ARATH Probable transcription factor At5g61620; TrEMBL-Plants: tr|I3SVI3|I3SVI3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0232600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:69163398..69165221) extracted from Lotus japonicus Gifu genome v1.2.
CCCACATCTCACTCCATCATCATATATATCACCAAACATATCTGTAATTTCTGCTCTCTTCTGTCTCTCTTTCTCCTTCT CAGACACACACAGTTTGGTGTTGTTGTTGTGGCTGAGAAAACAAAACGAACCTTGTGTGTCAGGTGAAAAATGGGGAGGA AGTGCTCACATTGTGGAATCATAGGCCATAATTCCAGGACCTGCACCTCTTTGATCAGAGGTAGTTTTGTCGGGGTTCGC CTCTTCGGCGTTCAACTGGACATATCCTCCTGTCTCACCATGAAGAAAAGCTTCAGCATGGACTCCTTGCCCTTACCCTC TTCATCATCTTCTCCATCTTCCTCCTTTTGTTCGTCAAGAATAACGGTTGAAGAGAATTATGACAGAACCTCATTCGGGT ATCTATCAGATGGTCTCATTGCTGGAGCACAAGAGAGGAAGAAAGGTACTCACAAAAATTCTCCGCAGAAGCGATTTTGA CTTTAGAATGAATTAATTGTAATAGAAACAGACTTTTTTTTTGTATATTTTCCATCACTCATTTTCTTCATTAAATTTTG TTTGTGAAATTATTTTGGAAATAGGTAGACTTACATTATTTTCTTCATATCTTATTTATTATCCTCCCCACCCCTTGAAT CTAACTTTTTTTTTTGTGCTATAAATATATTAGGAGTTCCGTGGACAGAAGAAGAACACAGAACATTCCTAATTGGATTA GAGAAACTGGGAAAAGGAGACTGGAGGGGAATCTCTAGAAACTATGTGACTACAAGAACACCAACCCAAGTTGCAAGCCA TGCTCAGAAGTACTTCATTCGACTAGCCATGATGAATAAGAAGAAAAGACGTTCAAGTCTCTTTGACATGGTAGATTTAT GATGAACTCCTTTATGAATTAGTCAAGTGATTCTTTCTTTATGAATATTATCTTATTTAAATATGACTTTGTCGGGAAAA AAACAAAATGGTTTCACAAGTTAAAAAGGTTTTCAATTCTGCAAATTAATTTTACAACATTAGGAACATATTATAAATAG AATGTTAGTTGTAAAAACACATTTTACGGTTGGACAAGTTTTTAACATAGTACACAACAAACTACCCCTGAAATATTAAT TTTGTTTCTCATAAATTGGCAGATTGGTAGCAAAAGCACAAAAACTACTCCTCATCCAAATAGCAGTTCAGATTCTTGTA ATCAACAAGTTAAATCCAAATGTGAAGTTGAGAAGGATGCTACTTTGTCACTGCTAACCTCCTTCCAACAAGAAACTAAA TCAGATGATGATGATGAGAAGAAAACTGGTGATGATAGATACTCTAACGTTGAAGCATCAGAAGCTGCAGAGCCTATGTG GCTATCCTAAAATGCAGTAGGGCCTGATCTGCAGCTCACTCTTGCAGCACCTAAAGTAAACACCTTGGAACAACCTAAGT CATCCCCTGGTTCCTTCCTTCTTGGGTCAATTAGTGTCACTTGATTAAAGTAATTAACTACATAAATATGTTTTTCATAG GCAAATATGTGAAGCTTAATTATACTATTATATATAAATTTAGCAGGGATATATGAATCCTTTTAATTATTTGTTGTCTA GCTAGCATCAACTCACTCAGATAGAAGATCTTCTCATCTGATCAAAGAAACATATTTACTTTTCTTGGTGTAGTCATTCA TTAAGCATTAACCTATGCAATAATCAGATATATATAGCACTTGATTATTAAATAGCATATACATACAAATATCTTTTTAT CACTGCAAATTAAGTTCAATCAGTTCAACTAAGCACCGAGCTATAGACACAAGGCTTTTAGTCG
CDS sequence (LotjaGi2g1v0232600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAGGAAGTGCTCACATTGTGGAATCATAGGCCATAATTCCAGGACCTGCACCTCTTTGATCAGAGGTAGTTTTGT CGGGGTTCGCCTCTTCGGCGTTCAACTGGACATATCCTCCTGTCTCACCATGAAGAAAAGCTTCAGCATGGACTCCTTGC CCTTACCCTCTTCATCATCTTCTCCATCTTCCTCCTTTTGTTCGTCAAGAATAACGGTTGAAGAGAATTATGACAGAACC TCATTCGGGTATCTATCAGATGGTCTCATTGCTGGAGCACAAGAGAGGAAGAAAGGAGTTCCGTGGACAGAAGAAGAACA CAGAACATTCCTAATTGGATTAGAGAAACTGGGAAAAGGAGACTGGAGGGGAATCTCTAGAAACTATGTGACTACAAGAA CACCAACCCAAGTTGCAAGCCATGCTCAGAAGTACTTCATTCGACTAGCCATGATGAATAAGAAGAAAAGACGTTCAAGT CTCTTTGACATGATTGGTAGCAAAAGCACAAAAACTACTCCTCATCCAAATAGCAGTTCAGATTCTTGTAATCAACAAGT TAAATCCAAATGTGAAGTTGAGAAGGATGCTACTTTGTCACTGCTAACCTCCTTCCAACAAGAAACTAAATCAGATGATG ATGATGAGAAGAAAACTGGTGATGATAGATACTCTAACGTTGAAGCATCAGAAGCTGCAGAGCCTATGTGGCTATCCTAA
Protein sequence (LotjaGi2g1v0232600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRKCSHCGIIGHNSRTCTSLIRGSFVGVRLFGVQLDISSCLTMKKSFSMDSLPLPSSSSSPSSSFCSSRITVEENYDRT SFGYLSDGLIAGAQERKKGVPWTEEEHRTFLIGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFIRLAMMNKKKRRSS LFDMIGSKSTKTTPHPNSSSDSCNQQVKSKCEVEKDATLSLLTSFQQETKSDDDDEKKTGDDRYSNVEASEAAEPMWLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 220 | 220 | 5.7E-93 | – | |
| PANTHER | 1 | 220 | 220 | 5.7E-93 | – | |
| ProSiteProfiles | 94 | 150 | 57 | 19.277 | ||
| SUPERFAMILY | 95 | 149 | 55 | 1.5E-17 | ||
| TIGRFAM | 97 | 148 | 52 | 7.2E-18 | ||
| SMART | 98 | 148 | 51 | 1.6E-9 | ||
| Gene3D | 100 | 152 | 53 | 5.6E-17 | – | |
| CDD | 101 | 146 | 46 | 1.09727E-8 | ||
| Pfam | 101 | 145 | 45 | 7.8E-11 | ||
| MobiDBLite | 166 | 189 | 24 | - | – | |
| MobiDBLite | 166 | 187 | 22 | - | – | |
| MobiDBLite | 202 | 239 | 38 | - | – | |
| MobiDBLite | 208 | 228 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0232600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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