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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0234400 |
| Transcript ID | LotjaGi2g1v0234400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sodium transporter; TAIR: AT4G10310.1 high-affinity K+ transporter 1; Swiss-Prot: sp|Q84TI7|HKT1_ARATH Sodium transporter HKT1; TrEMBL-Plants: tr|I3T0X2|I3T0X2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0234400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:69359304..69363204) extracted from Lotus japonicus Gifu genome v1.2.
GTCCGCATCACACCAAGGTAAGAGATTCCAGCCACACACTCCCAGGGAAGATTTCCTTATGATATTTCATGCATGCCATC TCATGCTTTTGCATGACCTATTAGAAGCTTATAACCGTGAGGAACTGGAAGAGGACACACTGCACAAACAACAATTTTGT TTTCTCATTCTTCATCAATGGCTTCCCGCTTGACTTATATCCAGGCCAAAGCTGTTCTTCAATTACACCCAAGGATGATA AATTTTGCCTACTTTGGCAGAAAGCTTGAGCCTTTTTGCAGTTCTTTCCTGCACAACTTCAACTTCCATGCATCCTTGGC TCGTTTCTTATCCTTTCAATTCAACCCTTTCTTTGTCCAACTTTGCTATTTCTTGATCCTTTCTCTGTTTGGTTACATGG GCCTCAAGGTCTCAAACCCAAGGTCCCCTGTTAGGCTCAATGACCTTGATCTGTTTTACACCTCTGTTTCTGCTTCCACA GTGTCTAGCATGTCAGCCTTAGAAATGGAGGTTTTCTCCAATTCGCAGCTCATTATTCTCACCTTTCTCATGTTACTTGG TGGGGAAGTTTTTATTTCCTTTCTCCAACTCGTGTTTACAAGGTTCAAATATAGCACCACTCTTTCAATGAAACAAGATT CCTCATTTAAGGCCAATCAAATTGAGCTTGGTTTAGTTTCTGTTTCTCACTCAGAAAACCATAAACCCAATCAAGTTGAG TCCTTCAACGATAGAGAGAGACTTAAGTATAATTCTCTTAAGTGTTTGAGTCATGTTGTGTTGAGTTACCTTATTGTGGT TCATTTTGTTGGTGTTGGTTTGGTCTCTTTGTACATATTGTTGATACCAAGTGTGAGACAAGTACTAGAAAAAAAAGGCA TCAAATTGCAAACATTTTCTTTCTTCACCATAGTTTCCACTTTTGCCAATTGTGGTTTTGTTCCAACCAATGAAAACATG GTTGTTTTCAAGAAGAATTCAGGGCTTCTCATCCTTCTCCTCCCACTTGTCTTTCTGGGTAACACCCTTTACCCACCATG TTTGAGGCTTGTCATAAAGCTTCTGAAAAAAGGTACCGGAAGAGAGGAATTCTCGTACTTGCTGAAGAATTCGAAAGAGA TGGGTTATGGCCATTTGCTCTCTGGTCTTCATTGCTGGCTCCTGCTTGTTACTGTTTTTGGGTTCAATATGGTGCAATTT ATAATGTTGTGCTCCATGGAGCGGAACTCCAAAAGTATGGAGGGTTTAAATCTATATGGGAAATTGGTTGCTTCTTTGTT TCAAGTTACAAATACGAGACATGCTGGTGAATCTGTTTTTGATCTCTCCACAGTCTCTTCAGCCATATTGGTGCTCTTCA TTGTCATGATGTATGTAACCTCTTACCACACTTTCTTTGCTACATTCTATAGGCATGTGCCCTGCATCATTCCCCTGCCC CACCCACACACACTCCCCTCTCTTTTGTGATGCTTCTGGGTTCTTCAAATATCAGCAATGTTTTCTTTTCATAGGAAAAT GATTCTTAGAAATTTATATACAGACATCTAATACACATAGAGTGGACTCGGCGAAACCCCAGTATCCCTCGCCCAGGAGA CTCAACCTTAGGCGTGGGACGCATCAGGACCTTGGGCCTCCCTTCCTGAGGCCCAACTGGCCCATTTAGATAGATTTAGG GTGCCAAAGCCCAACTCCACCTCTATAAATAGGAGGGGAATACCAATTGTAAGAGACTTTTTAGCTCATTTGAGAAACAA TAACATTGAAATTCAGTTACATGTTCTCTCTCTAAGCGGTTAGAGTTTCTCTCTCTGAGCATTCATATCACTTTCATCAC ACTTTGGGTACTACCTTCCCATTTTATGTTCTAGCACGGAACATAGAGTGAGAAAGAAAAGAAGAGAGAGAAGGGATTTA TGTGATTTAAGATAGAAGAGAAATAAAGAGAAAAATGAGGCATCTATGTGATGTATACACTTTTTACGTCTTTGAGTTGG TTAGAATGGTATATACACTACATGTACATTTCAACTTCCTCCATAAAAGCAGTAGGAATTTCATAAATTTTCTCTGAGCA TTCATATCACTTTCCTCACACTTTGGGTACTACCTTCCCATTTTATGTTCTAGCACAGAACATAGAGTGAGAAAGAAAAG AAGAGAGAGAAGAGATTTATGTGATTTAAGATAGAAGAGAAATAAAGAGAAAAATGAGGCATCTATGTGATGTATACACT TTTTACGTCTTTGAGTTGGTTAGAATGGTATATACACTACATGTACATTTCAACTTCCTCCATTAAAGCAGTAGGAATTT CATAAATTTTCTCTGAGCATTCATATCACTTTCCTCACACTTTGGGTACTACCTTCCCATTTTATGTTCTAGCACGGAAC ATAGAGTGAGAAAGAAAAGAAGAGAGAGAAGAGATTTATGTGATTTAAGATAGAAGAGAAATAAAGAGAAAAAAGAGGCA TCTATGTGATGTCTACACTTTTTACGTCTTTGAGTTGGTTAGAATGGTATATACACTACATGTACATTTCAACTTCCTAC ATAAATAAAAGGAGTAGGAATTTCATAAATTTTCTTTATCTTCCTCCTTCAATAATGCACCTTTTATGTTATGATATCAA ACACTATGTTCATGCTTTAAAAAAATAAAAATAAAAACACTTTTTTGATAATGATCTTTAAGAAGTACAGCAAATATCTC AATTAATCTTGTGAAATTGTGAATGCTGTTTTTCTGAGTATTATTTGATTTGAAATTTCTTTCTCCAACAGGTACCTTCC ACCATACACTACATTTTTATCTGTAAGGGACCAAGAAAATAATGCCAAGAGAGAAGAAAAAAGCATAGTGGAGTGTCTTG TATTCTCTCAAATCTCTTACTTGGTTATTTTCATCATTCTGATTTGCATCACTGAGAGAGAAAGCTTGAAAGAGGATCCC CTCAACTTTAATGTCCTGAACATCACCCTAGAAGTCATCAGGCAAGTAACCGACTAAATGTGTAGATCAACTGATATGTT GTTTTTTAACTTTAAAAAATTCTATAATTGTTTTGAACTCCAAAATCAATTTTTGGATGAAGTTACAAATAATTAATTTG TGAAACTTTATAACATCACTGATCTGGAAATTAAAAATGTGCAGTGCATATGGGAACGTGGGATTCTCAACAGGGTATAG CTGCGCAAGGCAATTGAAACCTGATGCTATGTGCAGAGATTCATGGGTTGGATTTTCTGGTAGGTGGAGCACTAAAGGCA AGTCGATCCTCATCTTTGTCATGTTCTTTGGGAGGCTCAAGCAATTCAATATGAATGGTGGCAAACCCTGGCATCAATCC AAGCATATACCTAACAGCACAAATGCTTCGCAAACATGAATAATTTTACTCTATATATATAGTCGAGCAAGTTTTGTCCT CAAGCGCCTACAAGCATATAGCTTTATAGCGTGTTTGGTTTTATGGTAGAAAGCATCAGCTTATGATAACTTTTGCTCTG TCCAATCATGCTATCGGTAAAGGGGTAAATAGTAACAAATGCTATTTGCATGAAGAGTTGCAATACTTACAATACGAGTA ATGTTTCATCCACACCTCTCTTTTGAGGTGGAGAGGTGGAATGGTGAGATAGATAGGAAGAAAAGAAAAAGTAAGAGAGA GAAAATATGAGATGTGATAAATGATAAGATGAGAGAGATAGAAATAAAAAGAGGTGAAAATGGAGTGTTTAAAAAATGAG GTGTGTATATATCATTACTCAGTTTGGATATGATACATGAGCTGAAGTGGACCAATTAAACAAATCTAAAGTATAATTAA TTAAGCATTTTCTCCTTTTTTTCTGTGAAATAAATGTTATTAAAAATTACATTATTTACTT
CDS sequence (LotjaGi2g1v0234400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCCGCTTGACTTATATCCAGGCCAAAGCTGTTCTTCAATTACACCCAAGGATGATAAATTTTGCCTACTTTGG CAGAAAGCTTGAGCCTTTTTGCAGTTCTTTCCTGCACAACTTCAACTTCCATGCATCCTTGGCTCGTTTCTTATCCTTTC AATTCAACCCTTTCTTTGTCCAACTTTGCTATTTCTTGATCCTTTCTCTGTTTGGTTACATGGGCCTCAAGGTCTCAAAC CCAAGGTCCCCTGTTAGGCTCAATGACCTTGATCTGTTTTACACCTCTGTTTCTGCTTCCACAGTGTCTAGCATGTCAGC CTTAGAAATGGAGGTTTTCTCCAATTCGCAGCTCATTATTCTCACCTTTCTCATGTTACTTGGTGGGGAAGTTTTTATTT CCTTTCTCCAACTCGTGTTTACAAGGTTCAAATATAGCACCACTCTTTCAATGAAACAAGATTCCTCATTTAAGGCCAAT CAAATTGAGCTTGGTTTAGTTTCTGTTTCTCACTCAGAAAACCATAAACCCAATCAAGTTGAGTCCTTCAACGATAGAGA GAGACTTAAGTATAATTCTCTTAAGTGTTTGAGTCATGTTGTGTTGAGTTACCTTATTGTGGTTCATTTTGTTGGTGTTG GTTTGGTCTCTTTGTACATATTGTTGATACCAAGTGTGAGACAAGTACTAGAAAAAAAAGGCATCAAATTGCAAACATTT TCTTTCTTCACCATAGTTTCCACTTTTGCCAATTGTGGTTTTGTTCCAACCAATGAAAACATGGTTGTTTTCAAGAAGAA TTCAGGGCTTCTCATCCTTCTCCTCCCACTTGTCTTTCTGGGTAACACCCTTTACCCACCATGTTTGAGGCTTGTCATAA AGCTTCTGAAAAAAGGTACCGGAAGAGAGGAATTCTCGTACTTGCTGAAGAATTCGAAAGAGATGGGTTATGGCCATTTG CTCTCTGGTCTTCATTGCTGGCTCCTGCTTGTTACTGTTTTTGGGTTCAATATGGTGCAATTTATAATGTTGTGCTCCAT GGAGCGGAACTCCAAAAGTATGGAGGGTTTAAATCTATATGGGAAATTGGTTGCTTCTTTGTTTCAAGTTACAAATACGA GACATGCTGGTGAATCTGTTTTTGATCTCTCCACAGTCTCTTCAGCCATATTGGTGCTCTTCATTGTCATGATGTACCTT CCACCATACACTACATTTTTATCTGTAAGGGACCAAGAAAATAATGCCAAGAGAGAAGAAAAAAGCATAGTGGAGTGTCT TGTATTCTCTCAAATCTCTTACTTGGTTATTTTCATCATTCTGATTTGCATCACTGAGAGAGAAAGCTTGAAAGAGGATC CCCTCAACTTTAATGTCCTGAACATCACCCTAGAAGTCATCAGTGCATATGGGAACGTGGGATTCTCAACAGGGTATAGC TGCGCAAGGCAATTGAAACCTGATGCTATGTGCAGAGATTCATGGGTTGGATTTTCTGGTAGGTGGAGCACTAAAGGCAA GTCGATCCTCATCTTTGTCATGTTCTTTGGGAGGCTCAAGCAATTCAATATGAATGGTGGCAAACCCTGGCATCAATCCA AGCATATACCTAACAGCACAAATGCTTCGCAAACATGA
Protein sequence (LotjaGi2g1v0234400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASRLTYIQAKAVLQLHPRMINFAYFGRKLEPFCSSFLHNFNFHASLARFLSFQFNPFFVQLCYFLILSLFGYMGLKVSN PRSPVRLNDLDLFYTSVSASTVSSMSALEMEVFSNSQLIILTFLMLLGGEVFISFLQLVFTRFKYSTTLSMKQDSSFKAN QIELGLVSVSHSENHKPNQVESFNDRERLKYNSLKCLSHVVLSYLIVVHFVGVGLVSLYILLIPSVRQVLEKKGIKLQTF SFFTIVSTFANCGFVPTNENMVVFKKNSGLLILLLPLVFLGNTLYPPCLRLVIKLLKKGTGREEFSYLLKNSKEMGYGHL LSGLHCWLLLVTVFGFNMVQFIMLCSMERNSKSMEGLNLYGKLVASLFQVTNTRHAGESVFDLSTVSSAILVLFIVMMYL PPYTTFLSVRDQENNAKREEKSIVECLVFSQISYLVIFIILICITERESLKEDPLNFNVLNITLEVISAYGNVGFSTGYS CARQLKPDAMCRDSWVGFSGRWSTKGKSILIFVMFFGRLKQFNMNGGKPWHQSKHIPNSTNASQT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 57 | 57 | - | – | |
| PANTHER | 40 | 531 | 492 | 8.3E-217 | – | |
| PANTHER | 40 | 531 | 492 | 8.3E-217 | – | |
| TMHMM | 50 | 72 | 23 | - | – | |
| Phobius | 58 | 76 | 19 | - | – | |
| Phobius | 77 | 117 | 41 | - | – | |
| TMHMM | 118 | 140 | 23 | - | – | |
| Phobius | 118 | 140 | 23 | - | – | |
| Phobius | 141 | 195 | 55 | - | – | |
| Pfam | 186 | 410 | 225 | 2.2E-25 | ||
| Phobius | 196 | 223 | 28 | - | – | |
| TMHMM | 201 | 223 | 23 | - | – | |
| Phobius | 224 | 234 | 11 | - | – | |
| Phobius | 235 | 255 | 21 | - | – | |
| Phobius | 256 | 266 | 11 | - | – | |
| Phobius | 267 | 285 | 19 | - | – | |
| TMHMM | 271 | 293 | 23 | - | – | |
| Phobius | 286 | 319 | 34 | - | – | |
| Phobius | 320 | 344 | 25 | - | – | |
| TMHMM | 320 | 342 | 23 | - | – | |
| Phobius | 345 | 379 | 35 | - | – | |
| Phobius | 380 | 402 | 23 | - | – | |
| TMHMM | 387 | 409 | 23 | - | – | |
| Phobius | 403 | 421 | 19 | - | – | |
| TMHMM | 422 | 444 | 23 | - | – | |
| Phobius | 422 | 444 | 23 | - | – | |
| Pfam | 423 | 520 | 98 | 5.1E-8 | ||
| Phobius | 445 | 545 | 101 | - | – | |
| TMHMM | 459 | 481 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Cation transmembrane transporter activity | Enables the transfer of cation from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0234400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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