Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi2g1v0234400 |
Transcript ID | LotjaGi2g1v0234400.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Sodium transporter; TAIR: AT4G10310.1 high-affinity K+ transporter 1; Swiss-Prot: sp|Q84TI7|HKT1_ARATH Sodium transporter HKT1; TrEMBL-Plants: tr|I3T0X2|I3T0X2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0234400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:69359353..69363538) extracted from Lotus japonicus Gifu genome v1.2.
CTTCATCGGAAAATTACAAAACAAACAAACAAAAAACTAAGGAATAGAAAGAGAGTCCTTCAACAGAAGGTACTCAACAT CATGATCTGGGCTCTGAATACAAGACCCCGAACTCATAGCAGCAGCACCTCTCTGAGCTAAATGTTCCGCAACCGCGTTG CTATCACGGTGAACACTGTTAATTCTCACGTGCCAGTCCCTAGCCAAGAGAGTAAACTTTCCCCTTCTTGAACAAGTACT TAGATTGTTACGAAATGATTTATATTCAGCGTATACTAATTAAATTCTTGAGTATGTGTTCACATTGAACATGCAAAGTT TATTGGTGTTGAGTGTCCGCATCACACCAAGGTAAGAGATTCCAGCCACACACTCCCAGGGAAGATTTCCTTATGATATT TCATGCATGCCATCTCATGCTTTTGCATGACCTATTAGAAGCTTATAACCGTGAGGAACTGGAAGAGGACACACTGCACA AACAACAATTTTGTTTTCTCATTCTTCATCAATGGCTTCCCGCTTGACTTATATCCAGGCCAAAGCTGTTCTTCAATTAC ACCCAAGGATGATAAATTTTGCCTACTTTGGCAGAAAGCTTGAGCCTTTTTGCAGTTCTTTCCTGCACAACTTCAACTTC CATGCATCCTTGGCTCGTTTCTTATCCTTTCAATTCAACCCTTTCTTTGTCCAACTTTGCTATTTCTTGATCCTTTCTCT GTTTGGTTACATGGGCCTCAAGGTCTCAAACCCAAGGTCCCCTGTTAGGCTCAATGACCTTGATCTGTTTTACACCTCTG TTTCTGCTTCCACAGTGTCTAGCATGTCAGCCTTAGAAATGGAGGTTTTCTCCAATTCGCAGCTCATTATTCTCACCTTT CTCATGTTACTTGGTGGGGAAGTTTTTATTTCCTTTCTCCAACTCGTGTTTACAAGGTTCAAATATAGCACCACTCTTTC AATGAAACAAGATTCCTCATTTAAGGCCAATCAAATTGAGCTTGGTTTAGTTTCTGTTTCTCACTCAGAAAACCATAAAC CCAATCAAGTTGAGTCCTTCAACGATAGAGAGAGACTTAAGTATAATTCTCTTAAGTGTTTGAGTCATGTTGTGTTGAGT TACCTTATTGTGGTTCATTTTGTTGGTGTTGGTTTGGTCTCTTTGTACATATTGTTGATACCAAGTGTGAGACAAGTACT AGAAAAAAAAGGCATCAAATTGCAAACATTTTCTTTCTTCACCATAGTTTCCACTTTTGCCAATTGTGGTTTTGTTCCAA CCAATGAAAACATGGTTGTTTTCAAGAAGAATTCAGGGCTTCTCATCCTTCTCCTCCCACTTGTCTTTCTGGGTAACACC CTTTACCCACCATGTTTGAGGCTTGTCATAAAGCTTCTGAAAAAAGGTACCGGAAGAGAGGAATTCTCGTACTTGCTGAA GAATTCGAAAGAGATGGGTTATGGCCATTTGCTCTCTGGTCTTCATTGCTGGCTCCTGCTTGTTACTGTTTTTGGGTTCA ATATGGTGCAATTTATAATGTTGTGCTCCATGGAGCGGAACTCCAAAAGTATGGAGGGTTTAAATCTATATGGGAAATTG GTTGCTTCTTTGTTTCAAGTTACAAATACGAGACATGCTGGTGAATCTGTTTTTGATCTCTCCACAGTCTCTTCAGCCAT ATTGGTGCTCTTCATTGTCATGATGTATGTAACCTCTTACCACACTTTCTTTGCTACATTCTATAGGCATGTGCCCTGCA TCATTCCCCTGCCCCACCCACACACACTCCCCTCTCTTTTGTGATGCTTCTGGGTTCTTCAAATATCAGCAATGTTTTCT TTTCATAGGAAAATGATTCTTAGAAATTTATATACAGACATCTAATACACATAGAGTGGACTCGGCGAAACCCCAGTATC CCTCGCCCAGGAGACTCAACCTTAGGCGTGGGACGCATCAGGACCTTGGGCCTCCCTTCCTGAGGCCCAACTGGCCCATT TAGATAGATTTAGGGTGCCAAAGCCCAACTCCACCTCTATAAATAGGAGGGGAATACCAATTGTAAGAGACTTTTTAGCT CATTTGAGAAACAATAACATTGAAATTCAGTTACATGTTCTCTCTCTAAGCGGTTAGAGTTTCTCTCTCTGAGCATTCAT ATCACTTTCATCACACTTTGGGTACTACCTTCCCATTTTATGTTCTAGCACGGAACATAGAGTGAGAAAGAAAAGAAGAG AGAGAAGGGATTTATGTGATTTAAGATAGAAGAGAAATAAAGAGAAAAATGAGGCATCTATGTGATGTATACACTTTTTA CGTCTTTGAGTTGGTTAGAATGGTATATACACTACATGTACATTTCAACTTCCTCCATAAAAGCAGTAGGAATTTCATAA ATTTTCTCTGAGCATTCATATCACTTTCCTCACACTTTGGGTACTACCTTCCCATTTTATGTTCTAGCACAGAACATAGA GTGAGAAAGAAAAGAAGAGAGAGAAGAGATTTATGTGATTTAAGATAGAAGAGAAATAAAGAGAAAAATGAGGCATCTAT GTGATGTATACACTTTTTACGTCTTTGAGTTGGTTAGAATGGTATATACACTACATGTACATTTCAACTTCCTCCATTAA AGCAGTAGGAATTTCATAAATTTTCTCTGAGCATTCATATCACTTTCCTCACACTTTGGGTACTACCTTCCCATTTTATG TTCTAGCACGGAACATAGAGTGAGAAAGAAAAGAAGAGAGAGAAGAGATTTATGTGATTTAAGATAGAAGAGAAATAAAG AGAAAAAAGAGGCATCTATGTGATGTCTACACTTTTTACGTCTTTGAGTTGGTTAGAATGGTATATACACTACATGTACA TTTCAACTTCCTACATAAATAAAAGGAGTAGGAATTTCATAAATTTTCTTTATCTTCCTCCTTCAATAATGCACCTTTTA TGTTATGATATCAAACACTATGTTCATGCTTTAAAAAAATAAAAATAAAAACACTTTTTTGATAATGATCTTTAAGAAGT ACAGCAAATATCTCAATTAATCTTGTGAAATTGTGAATGCTGTTTTTCTGAGTATTATTTGATTTGAAATTTCTTTCTCC AACAGGTACCTTCCACCATACACTACATTTTTATCTGTAAGGGACCAAGAAAATAATGCCAAGAGAGAAGAAAAAAGCAT AGTGGAGTGTCTTGTATTCTCTCAAATCTCTTACTTGGTTATTTTCATCATTCTGATTTGCATCACTGAGAGAGAAAGCT TGAAAGAGGATCCCCTCAACTTTAATGTCCTGAACATCACCCTAGAAGTCATCAGGCAAGTAACCGACTAAATGTGTAGA TCAACTGATATGTTGTTTTTTAACTTTAAAAAATTCTATAATTGTTTTGAACTCCAAAATCAATTTTTGGATGAAGTTAC AAATAATTAATTTGTGAAACTTTATAACATCACTGATCTGGAAATTAAAAATGTGCAGTGCATATGGGAACGTGGGATTC TCAACAGGGTATAGCTGCGCAAGGCAATTGAAACCTGATGCTATGTGCAGAGATTCATGGGTTGGATTTTCTGGTAGGTG GAGCACTAAAGGCAAGTCGATCCTCATCTTTGTCATGTTCTTTGGGAGGCTCAAGCAATTCAATATGAATGGTGGCAAAC CCTGGCATCAATCCAAGCATATACCTAACAGCACAAATGCTTCGCAAACATGAATAATTTTACTCTATATATATAGTCGA GCAAGTTTTGTCCTCAAGCGCCTACAAGCATATAGCTTTATAGCGTGTTTGGTTTTATGGTAGAAAGCATCAGCTTATGA TAACTTTTGCTCTGTCCAATCATGCTATCGGTAAAGGGGTAAATAGTAACAAATGCTATTTGCATGAAGAGTTGCAATAC TTACAATACGAGTAATGTTTCATCCACACCTCTCTTTTGAGGTGGAGAGGTGGAATGGTGAGATAGATAGGAAGAAAAGA AAAAGTAAGAGAGAGAAAATATGAGATGTGATAAATGATAAGATGAGAGAGATAGAAATAAAAAGAGGTGAAAATGGAGT GTTTAAAAAATGAGGTGTGTATATATCATTACTCAGTTTGGATATGATACATGAGCTGAAGTGGACCAATTAAACAAATC TAAAGTATAATTAATTAAGCATTTTC
CDS sequence (LotjaGi2g1v0234400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCCGCTTGACTTATATCCAGGCCAAAGCTGTTCTTCAATTACACCCAAGGATGATAAATTTTGCCTACTTTGG CAGAAAGCTTGAGCCTTTTTGCAGTTCTTTCCTGCACAACTTCAACTTCCATGCATCCTTGGCTCGTTTCTTATCCTTTC AATTCAACCCTTTCTTTGTCCAACTTTGCTATTTCTTGATCCTTTCTCTGTTTGGTTACATGGGCCTCAAGGTCTCAAAC CCAAGGTCCCCTGTTAGGCTCAATGACCTTGATCTGTTTTACACCTCTGTTTCTGCTTCCACAGTGTCTAGCATGTCAGC CTTAGAAATGGAGGTTTTCTCCAATTCGCAGCTCATTATTCTCACCTTTCTCATGTTACTTGGTGGGGAAGTTTTTATTT CCTTTCTCCAACTCGTGTTTACAAGGTTCAAATATAGCACCACTCTTTCAATGAAACAAGATTCCTCATTTAAGGCCAAT CAAATTGAGCTTGGTTTAGTTTCTGTTTCTCACTCAGAAAACCATAAACCCAATCAAGTTGAGTCCTTCAACGATAGAGA GAGACTTAAGTATAATTCTCTTAAGTGTTTGAGTCATGTTGTGTTGAGTTACCTTATTGTGGTTCATTTTGTTGGTGTTG GTTTGGTCTCTTTGTACATATTGTTGATACCAAGTGTGAGACAAGTACTAGAAAAAAAAGGCATCAAATTGCAAACATTT TCTTTCTTCACCATAGTTTCCACTTTTGCCAATTGTGGTTTTGTTCCAACCAATGAAAACATGGTTGTTTTCAAGAAGAA TTCAGGGCTTCTCATCCTTCTCCTCCCACTTGTCTTTCTGGGTAACACCCTTTACCCACCATGTTTGAGGCTTGTCATAA AGCTTCTGAAAAAAGGTACCGGAAGAGAGGAATTCTCGTACTTGCTGAAGAATTCGAAAGAGATGGGTTATGGCCATTTG CTCTCTGGTCTTCATTGCTGGCTCCTGCTTGTTACTGTTTTTGGGTTCAATATGGTGCAATTTATAATGTTGTGCTCCAT GGAGCGGAACTCCAAAAGTATGGAGGGTTTAAATCTATATGGGAAATTGGTTGCTTCTTTGTTTCAAGTTACAAATACGA GACATGCTGGTGAATCTGTTTTTGATCTCTCCACAGTCTCTTCAGCCATATTGGTGCTCTTCATTGTCATGATGTACCTT CCACCATACACTACATTTTTATCTGTAAGGGACCAAGAAAATAATGCCAAGAGAGAAGAAAAAAGCATAGTGGAGTGTCT TGTATTCTCTCAAATCTCTTACTTGGTTATTTTCATCATTCTGATTTGCATCACTGAGAGAGAAAGCTTGAAAGAGGATC CCCTCAACTTTAATGTCCTGAACATCACCCTAGAAGTCATCAGGCAAGTAACCGACTAA
Protein sequence (LotjaGi2g1v0234400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASRLTYIQAKAVLQLHPRMINFAYFGRKLEPFCSSFLHNFNFHASLARFLSFQFNPFFVQLCYFLILSLFGYMGLKVSN PRSPVRLNDLDLFYTSVSASTVSSMSALEMEVFSNSQLIILTFLMLLGGEVFISFLQLVFTRFKYSTTLSMKQDSSFKAN QIELGLVSVSHSENHKPNQVESFNDRERLKYNSLKCLSHVVLSYLIVVHFVGVGLVSLYILLIPSVRQVLEKKGIKLQTF SFFTIVSTFANCGFVPTNENMVVFKKNSGLLILLLPLVFLGNTLYPPCLRLVIKLLKKGTGREEFSYLLKNSKEMGYGHL LSGLHCWLLLVTVFGFNMVQFIMLCSMERNSKSMEGLNLYGKLVASLFQVTNTRHAGESVFDLSTVSSAILVLFIVMMYL PPYTTFLSVRDQENNAKREEKSIVECLVFSQISYLVIFIILICITERESLKEDPLNFNVLNITLEVIRQVTD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 57 | 57 | - | – | |
PANTHER | 40 | 467 | 428 | 2.2E-172 | – | |
PANTHER | 40 | 467 | 428 | 2.2E-172 | – | |
TMHMM | 50 | 72 | 23 | - | – | |
Phobius | 58 | 76 | 19 | - | – | |
Phobius | 77 | 117 | 41 | - | – | |
Phobius | 118 | 140 | 23 | - | – | |
TMHMM | 118 | 140 | 23 | - | – | |
Phobius | 141 | 195 | 55 | - | – | |
Pfam | 186 | 410 | 225 | 1.4E-25 | ||
Phobius | 196 | 223 | 28 | - | – | |
TMHMM | 201 | 223 | 23 | - | – | |
Phobius | 224 | 234 | 11 | - | – | |
Phobius | 235 | 255 | 21 | - | – | |
Phobius | 256 | 266 | 11 | - | – | |
Phobius | 267 | 285 | 19 | - | – | |
TMHMM | 271 | 293 | 23 | - | – | |
Phobius | 286 | 319 | 34 | - | – | |
Phobius | 320 | 344 | 25 | - | – | |
TMHMM | 320 | 342 | 23 | - | – | |
Phobius | 345 | 379 | 35 | - | – | |
Phobius | 380 | 402 | 23 | - | – | |
TMHMM | 387 | 409 | 23 | - | – | |
Phobius | 403 | 421 | 19 | - | – | |
TMHMM | 422 | 444 | 23 | - | – | |
Phobius | 422 | 444 | 23 | - | – | |
Phobius | 445 | 472 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
Molecular function | Cation transmembrane transporter activity | Enables the transfer of cation from one side of a membrane to the other. | ||
Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0234400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…