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LotjaGi2g1v0234500.1

Overview

Field Value
Gene ID LotjaGi2g1v0234500
Transcript ID LotjaGi2g1v0234500.1
Lotus japonicus genome version Gifu v1.2
Description Methyl-CpG-binding domain protein; TAIR: AT5G35330.1 methyl-CPG-binding domain protein 02; Swiss-Prot: sp|Q8LA53|MBD2_ARATH Methyl-CpG-binding domain-containing protein 2; TrEMBL-Plants: tr|A0A151T2U3|A0A151T2U3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0234500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:69387469..69393960) extracted from Lotus japonicus Gifu genome v1.2.

CTCGGTTTCAAAAAAAAAATAAAAAAAAGGAAACTCTATATAATAAGAACCGGAACCGAAAGCCTTCGACCCAAACCGGA AGCAAAAGGGCCATACTCATCACCATTTCCTTGTTGCAGAAATCGAAACCAACCGTACCAAACCCTCTCTCGTTTCCGCC AATCTGCACGCGTTCGCTTTCTCTCATCGCACAGCATCATTCTCCGATGAAGCGATGTATAATTTCTTCACAAGTTTTGT TCTATCTCTTTGATTTTGTTGTTGTTTCTGAAACGAAAATGCTAGATCCCGTTCTGTGTTTCGGTTTGATTTGTGGAAGA TGAATGCTTGATTGCAGAGAATGAAAAGTTTTGAAGAAAATGCTAGATCCTGTTTTTTTCATGCTTTTTGTTGTTGTTTC TGATCGAAGCTTGAATGCTCTGTTATTGGTTTAACCCTTGATTGTTTTGAAAGGAAGCTTTGGTTATGATGAGATTTCGT TTTTGAACCTAACGTAAGCTTTGATTTGATGGTTTTAGGGTTTTGAGTTTTGATACGCTGTGTTTGTTTGCAGAGGTTTT GCAATAGCATCTCAGGATCTTCTTCATTGGGTCCTTTCACCTTCCATTTCAAATAGGTTTGAACCTTTACTGTTTATCTG TTGTTGTATGTTTGTGTTGTGTTGTGTATGTGTACTCGTTAAAGCATTGCTATGTATGTGTGTGTGCATGTTGAATGCTA TGGTTTCATGCTTATCTGGTTGTGTTATCCATGATCTGTGTCTCTTGAGTTTCAACCTTTGAGGATGTTTTTTTCGGTTA ACGGTCGTTCTTTTAGACTTTTACTGTCTTCTGTAGACTAGTTTGATTGGAAATAGGAGATGACTTCCCGTTTTTGTTGC TAACTGTGTCTGGGAAAGACAGGAAAGTTGAGATATTGAAGAGCCTTTGAACCTGTAGAAACTGGATTCTGAGCTCGGTA AAGTTGTTATGAACCAATCGTGAGCACTACCTTGTTCCTTTAGGTATACCCCACGCATTCTGTGGGCCAAATCCTTGTCC ATCCTGAGTGTGCGAACTGTGAAGTTTGTTTATTTGTAGTTTTTTGTTGCATTGGGGGTATAGCCAAGAGAAATGCATTG TTGAGCTTTGTTCAGCTGAAAAACAAATAGGGTCAATTTGTTTGTCTCTGTTTGTTAAAGGGAATGGGGGAAATTACATC AATAATCTACCCGAGAATCCGAGATTAAGTTTTGAACTTAGTGTTGGGAACTCTGGATTAAAGGTTTGAACTTGAACCAA ACCAGTTGTTATTTTCTGATGTCATTTAGCCATGGTATACCTGAGCTATGTAGGCTTTATGATTTTCTTTCTTAATTTAG TTAGATACTTGATTTGATTTTTTAAACTTTGAGCAGGAACAAATCAGATTAAAAATAAGTGAATCTCTGCGTTCCTTGTC AGTTGTCGCCTTCCTTATTCGGTTTCTAAGATTCTAAAGGATTTCTAGTATTATTCTTTTAGAGTTCCAGTCAGACCTAA CTTTATCACAAACCTAACTCAGGGGCGAGGATTTCTCTACCCTATATAATGAGTTATTTAGTCATATCTCGAGTCAATGT GAGACCTTAGCGCTACTCAAGTCCAGGTTTGGACATCTAGAGTTTGAATTTTGCAAGACTGGACATGTGGGTGGCCCATT TATGGGTGACCCAACAAACAGATATAGGATAAGCTCTGATAATCTCTTAGAGTCCGAATGGAATCATATCAAACAGATAT TTTTATCATTTCAGCACCTGTATGCTGTGCTGAAATTATTTCTTATAGGCCTACTCTCATCCTAGCTACACCAATCATCC TCAATGTATACAGGTTCTGAATGTGGCAATCAAACTGTGACTCTGAGAAAACAAATCTGCATTGTAGTGACTGAGTAATT TTTGAAACTGAAAACAAATTGAAAGTAAAGCTAGTTAAAACTTAAAAGCAACAAGGAAGAAAGTGATTAATCAGGAAAGA ATAATTCTGCTGTGTTAATTTTCTTGATAGGGTACACCAATTAAATATACACGTGCTGATGGAGAATAATAACAGATTTC CTAAATTAGAGCTTGTCATATCAAATGAGATATTGACTATTAAATACAATATCTGGGGAAGTTTGACATTCCGTTATAAT TAGGCAACAAATCTGCAATTAGATATATCATTCTTTAACTAAGCTGTGCACATATAAGTGATAACACAGCTGTGAGAATT CATTTGAGAACACTATAGTTCCTGAAGAGTGGGCAGCCACTTTACTTCCATAAGGAAGGTTAATGATTAAAGGTTTCATC CTCTTAAAGGACTGAAATTGCGATAGAGTGACATGTGGTCCGTTGCTCCTGTGTCAGTAATCCAGTCATGGGAAACTGAA CATATAATCAGTGTTATTAAATATCGGCCATGGCGGCGCCATGGTGTTTTTTCATATCGGTTTTTCAACATGGCACCACA AAAAGTGTGTGGCGTTGCGGTTTGGCGGGGGCGGGGCCATGGCGGCCGCGATTTCCTTGGCGGTATGCGGAAATATCGGG AAATGGCGGAAATTCTCGAATTTGTTTTGGAAAAAAAACTGTGCAATGGGCCCATGGATTTTAATGGCCCAAGTCCATAT TTCAGCTTCTAAACCCCCAAATTCAGAATATAAACCCTAAGTTTACCCAATCTCCTTCCCACAGCTGCTGCCCCATCCAC CTCTGACCACCGCTCCGCCCATTCTCGGCCACCGCGTCTCTGCTCCGCCCAAGGTCTCAGATTAGTTATTTAGATGATTA GGATTGGATGATTAGTTGTTTAAATTAAATTCTACTCTTTAGACTTTTTTTTTTCATGTCAATTATAACTTGAAGTCTTG AATTTGTCATGATGTCTTGGTAATTGATATGTAATATGCTCGATGAGAGTATGAGACTTAATATCTATCTAGTATCTAAT ATCTATTGAACCTTTGTTATGATATTTGGTATTATATCTATGATATTGAGCCTATATTTGATGATATAAGTTGTTATTAG TTAGCAGAATATTATTTGTTGTATTTAGTGTTATCAAATAGCGGCTATAGCGGCACTACGCCGCTATAGCGTAGAGGAAT TTCGGCTAATCGCAACGCCGCTATTGCCCACTATAGCGCGCTATTCCCGCGATTCACCACTAAATAGCGGCTGAAATAGC GGATTTTTGGCTCACCGCGATGGTCCGCGATTTGACAACACTGGTGGTATTGTATAATTGCATTATGCAGGTTTTTTAAT GTGTGTATGTATAATTGTATATATATATATAATATATTATATATATATATATATATATATATTTATAATTTATTTTATTA AGGCCGCCATGGCATCCGCCATAATTATATGGCGTGATTTTGGCTTTCCGCCATGGACTGCCATCCGTCATTGATAACAC TGCATATAATACCTGTAGACATATAATTAAATTAAACCTTCATAATGAAAGGATTAAATATATATTCCAAACATTATTTG AATTTTGGCTATTTTTGTTGTGTTATGTTTACGTGTATTCTTGTTTAAACATTCTAAGCTACCCCCCGCTCCCCCAGTTT GCCGGTTATGAAATGGGTTTCCTAGTCTCTCTATCTTAAACTAGTCATCCTCTAATTTTTAGCCTATTAGGGCAATGGAT GTTGTGCTTCTGTAATGAACGTATGCAAGAAGAAATGGATAACTCTTAGGGGATTAATATAAATAGTCTCATTAAACGTG ACAATGAGAATTCCTTCCTGTGTTGAATTTATTCAAGATTTTTTTTTTCTCTGAGTTTCATAAAGCTTGTTCAGTAACAA CATTAAGGTATGGCTTTCTTTATTTACTTTTTTGTTTGAACATATCAGGTGCTAGACTTCTAAGAAAATCAAATGCATCC TCGTAAGTTTTTTCTTACACCCAAGAATCAAGTCAAGGAGAATGAAATGCATCCTCGTAAATTTTTCCTTTCACCCAAGA ATCAAGTTGAGGACCTAACAGGTTCCAGTTGTACCAGTCACCAACAAAGCTGTCTACCAGATCCAATATATGTTTCTTCT TCATCGTCAGATGATGAAAATGACCTGCCTAATGATGATGATGCATCTAAACAACTGGTCCTTTATGACCCTGCCAGCAA TGAAAACAACAAAATTGAACTTGCTCCTGGTCCTCTTCCTCTACAGTGTGAACCACCTCCATTGCTTGATTTACTTCCAA GAAGTAAACCTTCGAGGTCAGTTCCTAAAGTTTTGCCATCAGTCGGTGCTTTCACTGTTCAGTGTGCATCCTGCTTTAAA TGGAGGTTGATTCCAACAAAGGAAAAATATGAAGAAATACGTGAACATATCCTTGAACAGCCTTTTGTTTGTCAAAGAGC TCTTGAGTGGCGACCTGATGTATCTTGTGATGATCCAGAGGATATTTCTCAGGATGGAAACAGGATTTGGGCTATTGATA AGCCAAGCATTGCACAGCCTCCAGATGGATGGCAGCGACTGCTACGGATCAGAAGTGAAGGAAGTTCCAAATTTGCAGAT GTGTAAGCATCTGTTATTGGTTATTCTTTGTTATTGAAATGGAAACACCCTTATATAATGATACAATACTACTGCTTCCC ATCCATTAATTGAGTTTTTTGTGCTAGGAAGTCTATTCTCACGGAAATTCTAATTTTTCAATCATCAATTTGCAATGATA TTTCAGATACTATGTAGCACCAACAGGCAAGAGATTGCGCTCAATGGTAGATATCCAGAAGTATGTTTCTGCTGTTTCCG CTTTACTATCTTTGCAATGTGACCTTTTGTTTCTTATAATTTGCTCTTGGTTTCTGTGTTTTTAGGTTTTTGACGAATCA TCCAGAGTACTTGAAGGATGGGGTAACTCTTTCACGGTTCTCATTTACAATACCAAAGCCACTGCAAGAAAACTATGTGA GGAAGCGTCCTGCTACACTTAAATCTTCATATGACCTCAGTGGGCCTGTTCAACCTGAGCAAGGTACACAAAATGTTAAA CAAATTATACATTGGGGTTCGAATGAAAAATTTTAAACTTGATGCACTGAAGTTGACATGGATAGAAATTATTGGGTGGT TTAGTATGATTTATCTTTTGAAATATTCTTATAGAGATGAGGATGCGTAAGTTTGCGTAGACTTTAATGCCTTTTTTACA TACACGTTCACGTTTACTTTTACTTTCAGTACATTCATTTTTTTTGTTAACTTTCAATTCATCTTTTAGCCCTTGTCTCT TCTATTTTTTTTCTAATGTTGAAATATTCTTTTACTTATTTTTGTTACCCCATACATGTTCTAAATAACTTATGACCTAC TTATAAGCTATTTTTTGAGTATTTTTATAAGCTGCTCAGAGTAGCTTATAAATAAGCGCTACTTATAACCTATGTTGAGC TTATTTCAAAACTTCTCAAATTCGCTTTTGAATAGGTTCTTATGCCTTAGGCGCTTCATAAGCGTTTAATTGAACTGTTG ACACAAACGCAGCAAAGACATGGCATGATCAACTGGTTTGGAATGCAGCAAAGAACAAATAGTCTGTCAATATAGAACAC TCTTTTTGAATGAAATTAAACGTCTTAATACTGAGGATTTTAGTGCATTGTTATCATAAATTCATAATGATGTTTTTGAT GCAGCGCGGCCTCTTTCAATAGCATGGCCAGGTCCAGAAGACTCTGCTAATTCTGATGAGGACAGATCAGGGATTCCCGC TCCATTCTTCGGGTCGGATGTTTTTGACCCTATCAGCCGTCCTACAAAGAAGAGAACAGTACAGAAGCAAAGTTCCTTCC AAAATGATGCCCTATAGTAAGAAGAATATTAGGGGAGATTGTAATGCAAATCCTGAATCTTGAATATCCTGTGGGTTAGT CACCTACTCATGTCCTTTTGGGTAGATGTTGCAACTTCCTCTCTAATTCTTCTCACCCTTTTTGTAAGAAATGCAAGTGT TGTTAAATGAACTGCTACAGAAGATCAAAGGTGCCTAGCTTGGCAAGTATTTTGAGGTTGTAACCTGACCATGCCAACCC ATTTATGCTGAAAAACAATTTATGCCAACCAGTTTGTGTTAGAAAGCAATTGATTTTTATCATGATAAGTTTTAGTTACT GAGTATATCAATATCTTGGCATTTCTAGTAAAATTGTATTTGGCATCAGTGGACTTTTCTGCATTCAGTTCTCGAGAAGA CGTTCATATACATATTTTAAATCAAAATGGTCCCTGCCTCAAAAGAACGTGTTAACATGGTGATTCAGCAAGAGGATAAT TTGTTAGCATTTGATGTTGTTTGATCATGATTTGAGCTTCTTGTACGCATTTTTCATCTACTAGTTGAGATCTTGCACAA TGAGCAAAGTTCTTCTATGTTTTTAGTCCCCTTAAAATTTTTGAATTCGGATTTTAGCCCTTTATTTTCAAAAAAACTGT TTTTAACAACGC
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0234500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCATCCTCGTAAGTTTTTTCTTACACCCAAGAATCAAGTCAAGGAGAATGAAATGCATCCTCGTAAATTTTTCCTTTC ACCCAAGAATCAAGTTGAGGACCTAACAGGTTCCAGTTGTACCAGTCACCAACAAAGCTGTCTACCAGATCCAATATATG TTTCTTCTTCATCGTCAGATGATGAAAATGACCTGCCTAATGATGATGATGCATCTAAACAACTGGTCCTTTATGACCCT GCCAGCAATGAAAACAACAAAATTGAACTTGCTCCTGGTCCTCTTCCTCTACAGTGTGAACCACCTCCATTGCTTGATTT ACTTCCAAGAAGTAAACCTTCGAGGTCAGTTCCTAAAGTTTTGCCATCAGTCGGTGCTTTCACTGTTCAGTGTGCATCCT GCTTTAAATGGAGGTTGATTCCAACAAAGGAAAAATATGAAGAAATACGTGAACATATCCTTGAACAGCCTTTTGTTTGT CAAAGAGCTCTTGAGTGGCGACCTGATGTATCTTGTGATGATCCAGAGGATATTTCTCAGGATGGAAACAGGATTTGGGC TATTGATAAGCCAAGCATTGCACAGCCTCCAGATGGATGGCAGCGACTGCTACGGATCAGAAGTGAAGGAAGTTCCAAAT TTGCAGATGTATACTATGTAGCACCAACAGGCAAGAGATTGCGCTCAATGGTAGATATCCAGAAGTTTTTGACGAATCAT CCAGAGTACTTGAAGGATGGGGTAACTCTTTCACGGTTCTCATTTACAATACCAAAGCCACTGCAAGAAAACTATGTGAG GAAGCGTCCTGCTACACTTAAATCTTCATATGACCTCAGTGGGCCTGTTCAACCTGAGCAAGCGCGGCCTCTTTCAATAG CATGGCCAGGTCCAGAAGACTCTGCTAATTCTGATGAGGACAGATCAGGGATTCCCGCTCCATTCTTCGGGTCGGATGTT TTTGACCCTATCAGCCGTCCTACAAAGAAGAGAACAGTACAGAAGCAAAGTTCCTTCCAAAATGATGCCCTATAG
Download CDS Sequence

Protein sequence (LotjaGi2g1v0234500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MHPRKFFLTPKNQVKENEMHPRKFFLSPKNQVEDLTGSSCTSHQQSCLPDPIYVSSSSSDDENDLPNDDDASKQLVLYDP ASNENNKIELAPGPLPLQCEPPPLLDLLPRSKPSRSVPKVLPSVGAFTVQCASCFKWRLIPTKEKYEEIREHILEQPFVC QRALEWRPDVSCDDPEDISQDGNRIWAIDKPSIAQPPDGWQRLLRIRSEGSSKFADVYYVAPTGKRLRSMVDIQKFLTNH PEYLKDGVTLSRFSFTIPKPLQENYVRKRPATLKSSYDLSGPVQPEQARPLSIAWPGPEDSANSDEDRSGIPAPFFGSDV FDPISRPTKKRTVQKQSSFQNDAL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 25 25 - –
MobiDBLite
mobidb-lite
9 23 15 - –
MobiDBLite
mobidb-lite
51 71 21 - –
PANTHER
PTHR12396:SF7
54 338 285 4.6E-118 –
PANTHER
PTHR12396
54 338 285 4.6E-118 –
ProSiteProfiles
PS51050
121 180 60 12.909
IPR011124
Gene3D
G3DSA:3.30.40.100
125 183 59 3.9E-5 –
Pfam
PF07496
127 177 51 2.4E-12
IPR011124
SUPERFAMILY
SSF54171
165 286 122 3.92E-29
IPR016177
ProSiteProfiles
PS50982
186 260 75 16.562
IPR001739
SMART
SM00391
190 267 78 1.1E-7
IPR001739
CDD
cd01396
190 269 80 2.039E-25 –
Gene3D
G3DSA:3.30.890.10
194 259 66 1.5E-13 –
Pfam
PF01429
197 256 60 4.0E-13
IPR001739
MobiDBLite
mobidb-lite
276 344 69 - –
MobiDBLite
mobidb-lite
330 344 15 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0234500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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