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LotjaGi2g1v0238300.1

Overview

Field	Value
Gene ID	LotjaGi2g1v0238300
Transcript ID	LotjaGi2g1v0238300.1
Lotus japonicus genome version	Gifu v1.2
Description	Octicosapeptide/Phox/Bem1p family protein, putative; TAIR: AT5G16220.1 Octicosapeptide/Phox/Bem1p family protein; Swiss-Prot: sp\|O46669\|SCNAA_CANLF Sodium channel protein type 10 subunit alpha; TrEMBL-Plants: tr\|A0A0L9T5J2\|A0A0L9T5J2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0238300
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr2:69900039..69902486) extracted from Lotus japonicus Gifu genome v1.2.

CCACAACACAAACTCTTCCGTTATCCTAACTAACCTTAATGGGGCCCACACACGATGACTCTGGCGCCAAGCTCCGCCTA ATGTGCAGCTACGGCGGCCACATCCTCCCCCGTCCACGCACCGCCACCCTCTGCTACGTCGGCGGCGACACCCGCATAGT CTCCGTCGACCGCCGCGCCGTGACCACACTCTCCTCGTTAGTCTCCCACCTCTCCTCCGCTCTCTCCCTCGACTTCCCCT TCGCCGTCAAGTACCAGCTCCCTCACCTCGACCTCCGCTCCCTCATCTCCCTCTCCTCCGACAGCGACTTCCGCGCCCTA CTCGACCGCCACCACCGCCTCTCCTCCCCGAGAATCAGGCTCTTCCTCTTCCCTCTTATCCGCCACCCCAAGACTGATTC TTGGTTCTTCGATGGTGGTAACTTCTTGCACCCTGAGGTTCACCGCTTTGTCTCCTCTGCTCCGCCGCCTCGTGAAAGCG GTGTGGTTTTGGAGACTAGTTCGTCTTTTGAGTCTTCTTCTTCTTCAGCTTCCTTCACCAGCTTGCCTCCAAGGTACGTA CTCTTTGTTCTTGATAGGTGATAATGTGATATGATATTGGTAATCTAGTTTGATTGTGATAGCCATAGCTGTGAGATTAA CCTTTGGACTGAGAGTGAGTGATAGTTAATTAGGTGATCCAAGAAGCTCTCTCTAGAGCAGTGTTGTTTATTGCGGATGG CGGGTCATGGTGGAAAGCCCATACCCCACATACATGACGAGTAATGGCAGAATATGGCGGAGGCGTAATATTGCTGCCAT ATGGCGTAATATTGCTGCCATATGACCGGATATCGGCCATGGCGGAAAGTCTAAAACCGCTATGAGAAACTGCTGCCATG GCGGATATTTGATATCACTGCTCTAGAGTGATGATGACTAAGGTTTTGAATTGTGGTGGTAGTTGCGGTTGTCACCTTCA GCTGGCCACAATATGTGATTGTTAAGATCCTGAAAACCATGGCATTGCATTGTGATTTTGAAACTTGGTTATAGCTATAA GACTCAACCCTTTTAACCCTTGATATTTTAGCTAAAGAATGGCCAAGGGTTAATAACTTTTTATACAAGTTACATGCATA AATCTTTAAACATTTGAAAGAATGGATGTGAGGGTGAGGCATACTATTATATTTAGTAACATTTTTCACATGGATCTCAC TTGTATGCATTCACACCTTTTGTATTCAAATTGGTAAAAATTTCTTGGTGCTAACTACTGAATGGCATTGCTGAACAGCC AATTGATGTGTTCTAGTAGATGAAGATGTGAGAATGCCTTTTTCTTTATTGGTTAATGGTTGTGTTTTATTTTTGTTTCA GTGATAATTGTGTTTCAAGTATCATGTCCCACCAGCAGAACATATCTCACCAAGACCCTGTGGTTCATATTTCGGAGGCA AGACTCAACGCTGAATCCATTGAAGTTGAAAGCGAAAGTCCTTATATTATTTCTGCTGGGGTCATAGCTAATAACACGAA AATTGGTATAGGGTATTCTGCATTTCCACAGCCTAATCAAGTGGAGAGGTCACATTTGCAGCCTGTGCAAGCTGCTGCAC AGGTTTTACCCCTTCACCCGAGTGGCGTGTTGCCAGTACCATCTTATCAGCTCATTTACCAGCAACCACATCCTTTGCAG CATCCAACTTATCATATTAATCAACCAAGCCCTGTCTACCTTGTGCCTGTTGGAAACATGCCTCTCAATGCTTCTAACCA AGTTTCATTGAACCTTAATGCTCCCTCTATGAATTTTCATGTAGATCAAGACTCTGAGGTGGGAGCAAGGTGTCATTTTG CTCATGGTTCTTTTGCCTCCCAGAATTACTTAACAGATAATGCAACCATATCTTTTGTTTATGTACCGTACAATGGAAGT AAGCAGCCAGAAATGGATATTTATCCAATGCATCAGCAATCTCAGACTGTATCTATCACGGAGTTTCCCAAGGATGGAAA TGAACTTGATGATGAGCTTGCTCATGATCAGATATATAAATCTCAGCCCCCACCTCCGACAATGCCTTCTAAGCACCAAA CCATGACAAAAGCTACAACAAACCTTGTATCAGAGGCTCTTGCTCAATTGCAAGGGGATGACCTCAAGCAGCAGACAGAA ACAACATCATGACCACATTGATTCTAATGTTCTGGAAGATATATATAGTTTGGGTAGAAGTTTTACAGTGACTTTGAAGT TTTCTTTTAGTTTCTCTTCGTATGTACTAGTATTTCTTGTCTCGCAAGTGGCAACACACTGTGAGTGTATAATATAGTGA ATTTTCCTAGTACTTCCTTTTTTTCTTTTTGATATTTGTATGGTGTTAACTCTCTTGTTTGATATGTAAGCCTTCAAAAA TGCCAAATCTTATAGAAAGCTACGTATGCCTATTCCCCCAATTGTTTT

Download Genomic Sequence

CDS sequence (LotjaGi2g1v0238300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGCCCACACACGATGACTCTGGCGCCAAGCTCCGCCTAATGTGCAGCTACGGCGGCCACATCCTCCCCCGTCCACG CACCGCCACCCTCTGCTACGTCGGCGGCGACACCCGCATAGTCTCCGTCGACCGCCGCGCCGTGACCACACTCTCCTCGT TAGTCTCCCACCTCTCCTCCGCTCTCTCCCTCGACTTCCCCTTCGCCGTCAAGTACCAGCTCCCTCACCTCGACCTCCGC TCCCTCATCTCCCTCTCCTCCGACAGCGACTTCCGCGCCCTACTCGACCGCCACCACCGCCTCTCCTCCCCGAGAATCAG GCTCTTCCTCTTCCCTCTTATCCGCCACCCCAAGACTGATTCTTGGTTCTTCGATGGTGGTAACTTCTTGCACCCTGAGG TTCACCGCTTTGTCTCCTCTGCTCCGCCGCCTCGTGAAAGCGGTGTGGTTTTGGAGACTAGTTCGTCTTTTGAGTCTTCT TCTTCTTCAGCTTCCTTCACCAGCTTGCCTCCAAGTGATAATTGTGTTTCAAGTATCATGTCCCACCAGCAGAACATATC TCACCAAGACCCTGTGGTTCATATTTCGGAGGCAAGACTCAACGCTGAATCCATTGAAGTTGAAAGCGAAAGTCCTTATA TTATTTCTGCTGGGGTCATAGCTAATAACACGAAAATTGGTATAGGGTATTCTGCATTTCCACAGCCTAATCAAGTGGAG AGGTCACATTTGCAGCCTGTGCAAGCTGCTGCACAGGTTTTACCCCTTCACCCGAGTGGCGTGTTGCCAGTACCATCTTA TCAGCTCATTTACCAGCAACCACATCCTTTGCAGCATCCAACTTATCATATTAATCAACCAAGCCCTGTCTACCTTGTGC CTGTTGGAAACATGCCTCTCAATGCTTCTAACCAAGTTTCATTGAACCTTAATGCTCCCTCTATGAATTTTCATGTAGAT CAAGACTCTGAGGTGGGAGCAAGGTGTCATTTTGCTCATGGTTCTTTTGCCTCCCAGAATTACTTAACAGATAATGCAAC CATATCTTTTGTTTATGTACCGTACAATGGAAGTAAGCAGCCAGAAATGGATATTTATCCAATGCATCAGCAATCTCAGA CTGTATCTATCACGGAGTTTCCCAAGGATGGAAATGAACTTGATGATGAGCTTGCTCATGATCAGATATATAAATCTCAG CCCCCACCTCCGACAATGCCTTCTAAGCACCAAACCATGACAAAAGCTACAACAAACCTTGTATCAGAGGCTCTTGCTCA ATTGCAAGGGGATGACCTCAAGCAGCAGACAGAAACAACATCATGA

Download CDS Sequence

Protein sequence (LotjaGi2g1v0238300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGPTHDDSGAKLRLMCSYGGHILPRPRTATLCYVGGDTRIVSVDRRAVTTLSSLVSHLSSALSLDFPFAVKYQLPHLDLR SLISLSSDSDFRALLDRHHRLSSPRIRLFLFPLIRHPKTDSWFFDGGNFLHPEVHRFVSSAPPPRESGVVLETSSSFESS SSSASFTSLPPSDNCVSSIMSHQQNISHQDPVVHISEARLNAESIEVESESPYIISAGVIANNTKIGIGYSAFPQPNQVE RSHLQPVQAAAQVLPLHPSGVLPVPSYQLIYQQPHPLQHPTYHINQPSPVYLVPVGNMPLNASNQVSLNLNAPSMNFHVD QDSEVGARCHFAHGSFASQNYLTDNATISFVYVPYNGSKQPEMDIYPMHQQSQTVSITEFPKDGNELDDELAHDQIYKSQ PPPPTMPSKHQTMTKATTNLVSEALAQLQGDDLKQQTETTS

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31066 View details on PTHR31066 Search for proteins/transripts with this domain View external data on PTHR31066	11	419	409	2.0E-76	–
PANTHER	PTHR31066:SF57 View details on PTHR31066:SF57 Search for proteins/transripts with this domain View external data on PTHR31066:SF57	11	419	409	2.0E-76	–
SMART	SM00666 View details on SM00666 Search for proteins/transripts with this domain View external data on SM00666	26	113	88	3.2E-13	IPR000270 Show description in modal box View details on IPR000270 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF54277 View details on SSF54277 Search for proteins/transripts with this domain View external data on SSF54277	30	112	83	5.79E-9	–
Pfam	PF00564 View details on PF00564 Search for proteins/transripts with this domain View external data on PF00564	31	112	82	7.3E-11	IPR000270 Show description in modal box View details on IPR000270 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	396	415	20	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005515 View details of GO:0005515 AmiGO InterPro QuickGO	Molecular function	Protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).	Subterm of View details of GO:0005488

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0238300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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