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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0238800 |
| Transcript ID | LotjaGi2g1v0238800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Membrin; TAIR: AT2G36900.1 membrin 11; Swiss-Prot: sp|Q9SJL6|MEM11_ARATH Membrin-11; TrEMBL-Plants: tr|V7BNW0|V7BNW0_PHAVU Membrin; Found in the gene: LotjaGi2g1v0238800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:69957814..69961292) extracted from Lotus japonicus Gifu genome v1.2.
ATGTAAGGGTAGTATTGGGCTTTTATCCAAGATCCAATAACCCAACAAACGGGTTCGACGTGATCGAATCGGAGCCCGGG TTTCTTCAAACCATTACAACTTTCACGCGTTCGTTAATCCAAACACTCACTTCAATCTCTCTTTCCATTTGACCAAAAAA AAAAAAAAATCTCTCTTTCCATCGCCGGAGAAACCATCGGAAACCACCAACGTCACCGTTGCCGCCATGGAAGGAGGTGG AGGAACGCTCTCTGAGGTTCACCAAAAAGCAAAGAAACTTCTGCTCAGGTCCCGCGACGGCCTCGAACGCCTCGAGCGGC TCGAGCACTCTGCCGCCGGCGTCGACTCGGAGCTATCATTCGCCGTGAAGAAGGATATCGCTCAGGTCCAATCCCTCTGC GTCGAGATGGACCGCCTCTGGGGATCCGTCGGTGGCAAACCCCAGCGCGATCTGTGGAGAAGGTGAGTGAATCGAAATTG CTGTTATTCCGATCCCGATCCCGATCCATTCGAATTGTGTGTTGATTGTTATGCAAATTGTGAGGGATTGTGGGTTATTG ATGAATTGCAATGTGGTAACATAGTTGAAACTTGTATACTTTTTTCTGTGAATTTTGGGACTGAGATACATGTTACTAGA GCTGTGATTAGGAATCTTAAATTGAAGATAACGTAGCCTAGCGGCAAGCCCAAAAAACCCTATTTCGAGGGCTATTGCGT AAATAGTGGTGAATAGCGGAGTAGCGGTGAACCACCAGGGCGCTATGCTATAGCGCTATTGCGTTGCGCACGGCGGCGCT ATTAACAGGCCTGGTTTGTATATTGAGTCAGATTTATGCAGCAATTGAGACTAGTCGTTTTATCATGATTACATAATAAG AACTTGGCCAATACATGTTGTGGCTCAGTTGGTAAGGAAGGGTCACTTCTCCCATAAGGTTGTGTTGGTGGGCAATCTGT TTTTTTTTGTCAATGGGCAATCTGTGAATACCTTTGTAAGCACCTTTCTAAGCGACCTTTGGTTATGGAGGCATACCCTG ACCCGTGGTGGTGACTGGAGCTGAACCCACCCAAACTTTCTTTAACCAACAAAATAATAATAATAGGAACTTGAATGAAG TCCGTGTGTAGTTTCTTAGTTTTGCCTCAGCTTCTTCATTAGGTTTCAACTGTATTCATGAGCAATAAGATCATGTGCAT AATTTTGCTTTTCTTCTTGTTACTATTCTGAACATTTGTCTCCTGTCATCTGAATAAATGAAACAGGTGTATGTTATAAT ATTTACACTCACCATTAGAAACTCAATATTTTATACTATAATTCATTTCCCATTTTTTACTTGAACTTTACCATTGTAAT ATTCTATAAGATTAGATATTTATCTATACCAGCTTCATAATTTTGAGGTCCCAAATAAAACCATGATGGGCAGGTTCTCT AAACTAGTGATATGTCATTATATATCTTGTAAAATTCTCACACACTGAAAACCTTATGCTATTTGTTGCTTTCTATTGAA CAAAAATATATATCTTGTTTCTTCTCCAGTTATTTTTATATTATATGTATATTTCTGGTGTTATTTGACTTTCAGTGTTC TAGTTGATAGTATCTTCATTACAGGTTTTGTTTTGTTGCACAGAAAAGTGGAACAAATAGCGGAAGAGGCTGAATCACTG AAAGAGAGTTTGGATAAATTTAACTTAAGGAATCAGAAACGGATTAGTGAAGCTAAAGAGAGAGCTGAGCTTCTAGGACG AGCTGTATGTCATTTCTATCATGATTTGGTTTAAGGTCACACTTTTTTTCTCCTTGCTAATTAATGTCATCATTTCAAAT TGGTAGAATGGGGATTCTCACGTTATGAGGATTTTCGATGAGGAAGCACAAGCAATGCAGTCAGTTCGTACTTCTGCTCG GGAGCTGGAAAATGCTAATGCAATTGGGGAGGCCATTCTTTCTTCAATACATGGCCAAAGGGAACGCTTGAAGGTATTTT ACCTTTTGCTTTAATTTGTCAACAAATGATATTAATGCGGTATCTAATGGACATATATGGATATGATAACATACTCTTTT ATGCTACTGTTTATTTTTATTCATCTCTTATTGGTTGTGGATATGTGTTTCCTTTCCTAGCAAATGTATCCAGTAATTGC TTAAATTACTGCTGTCCAGCTGGTCATCCGTTGCTGCATTTTATTCTGAAAATTCTCTACTCCCCATTTCTCTCTTGTTC TTTTAACTCTATTTTCTGTTTGAAATGTTTGCCTCTTAAACATTTAACCTTTTCCTGTCTCTTTTTCCTAAATTTTAACT AATTCTTGCCACTTGTATTTGTTTCAAGGGTTAATTCTTGAAATACATGTTACATGGCATACAAAATAGAGTAGTTGCCT AATTTCTCAAGGAAGTGTGTTCTTAAGGATTACATAATTTCTTTAAACTTTTTATTTTCATTTGCTGAATATTTCCATCA AGCTTTTATGGTTTAGATGCTTTTGATTGCAGTTTTCATATTTTTTCGTTGGAACCAAAATGCAGGTTTTATTTTTCTGG TGTTCTTCTCTCTTATAAGTTATATTGGATCCAAATTATTATTATTTTCTCTTTTTTATAGTTCGACATACTTTTAATTT CCAAGGATGCTCACATTCGTGATAATTGGTGATGCTTTGTTAATCCCGTTGTATTGCTGCTGACATATCTTCTTCATATA TACCTTGGTGTGCAGAGTGCACATCGAAAGGCACTGGACATCCTGAATACAGTGGGGATATCAAACTCTGTTCTGAGGCT AATTGAGAGACGAAACCGTGTCGACCAGTGGATCAAATATGCAGGGATGCTATTAACTGTTATTTTCTTGTTTGCCTTTG TTTTCTGGAGACACTGACTGTAGTCAGGTGTTGAAAAACATGCTTCGGAAGATTTTTGTGAAAAGGATAGTGAGATACAA AATATGGCCGAGTAGCAAAGGAAAACCTGTGCACCATTCTATATAGCATACAGAAGTCAGAAGTGGTCACTCTTCATGTT TATTATTGTCCATAATTTGGCTGGAAAAGTATTTTCTGAGTATATTTTTGTGTAAACTTTCTTTTATTTTCCATGTAGAG AGAAAATGTTGATGAATATTATGCAAATTTGAAGAATCAGATGAGTGAAACTCAGACAATGTTTTCTTATCTAGCCTCTT CTTACGGCTATCTTATGCAGAATGAATGCACAAGGGTAATCTGGATGAATCTTATTTCCTTGTTTGCTCACCAAAATAAG AAATCTTCTGGCTGAAATATTCAAAAAAAATTGGAGATTTAAGCAAGATATTAAGAGGACTGGAGATTTCTGATAAAAAC TTTGGTTGAACCAACCACAAAAGCTTGCTGTTCTTGTGGTTAGAGGGTCCTAGGTCTTATAAAATTAACCTCACATCCAA ATTTCATACTTCCAATGCTCTACTAGTCTCATACCTTGC
CDS sequence (LotjaGi2g1v0238800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGAGGTGGAGGAACGCTCTCTGAGGTTCACCAAAAAGCAAAGAAACTTCTGCTCAGGTCCCGCGACGGCCTCGA ACGCCTCGAGCGGCTCGAGCACTCTGCCGCCGGCGTCGACTCGGAGCTATCATTCGCCGTGAAGAAGGATATCGCTCAGG TCCAATCCCTCTGCGTCGAGATGGACCGCCTCTGGGGATCCGTCGGTGGCAAACCCCAGCGCGATCTGTGGAGAAGAAAA GTGGAACAAATAGCGGAAGAGGCTGAATCACTGAAAGAGAGTTTGGATAAATTTAACTTAAGGAATCAGAAACGGATTAG TGAAGCTAAAGAGAGAGCTGAGCTTCTAGGACGAGCTAATGGGGATTCTCACGTTATGAGGATTTTCGATGAGGAAGCAC AAGCAATGCAGTCAGTTCGTACTTCTGCTCGGGAGCTGGAAAATGCTAATGCAATTGGGGAGGCCATTCTTTCTTCAATA CATGGCCAAAGGGAACGCTTGAAGAGTGCACATCGAAAGGCACTGGACATCCTGAATACAGTGGGGATATCAAACTCTGT TCTGAGGCTAATTGAGAGACGAAACCGTGTCGACCAGTGGATCAAATATGCAGGGATGCTATTAACTGTTATTTTCTTGT TTGCCTTTGTTTTCTGGAGACACTGA
Protein sequence (LotjaGi2g1v0238800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGGGGTLSEVHQKAKKLLLRSRDGLERLERLEHSAAGVDSELSFAVKKDIAQVQSLCVEMDRLWGSVGGKPQRDLWRRK VEQIAEEAESLKESLDKFNLRNQKRISEAKERAELLGRANGDSHVMRIFDEEAQAMQSVRTSARELENANAIGEAILSSI HGQRERLKSAHRKALDILNTVGISNSVLRLIERRNRVDQWIKYAGMLLTVIFLFAFVFWRH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 199 | 199 | - | – | |
| PIRSF | 8 | 221 | 214 | 6.7E-59 | ||
| PANTHER | 9 | 220 | 212 | 5.0E-80 | – | |
| PANTHER | 9 | 220 | 212 | 5.0E-80 | – | |
| Coils | 74 | 101 | 28 | - | – | |
| Gene3D | 125 | 198 | 74 | 4.6E-7 | – | |
| Pfam | 130 | 195 | 66 | 7.9E-15 | – | |
| SUPERFAMILY | 135 | 190 | 56 | 3.14E-6 | – | |
| TMHMM | 200 | 219 | 20 | - | – | |
| Phobius | 200 | 219 | 20 | - | – | |
| Phobius | 220 | 221 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | SNAP receptor activity | Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion. | ||
| Cellular component | Golgi apparatus | A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi2g1v0238800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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