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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0239300 |
| Transcript ID | LotjaGi2g1v0239300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | tRNA pseudouridine synthase B; TAIR: AT5G14460.1 Pseudouridine synthase family protein; Swiss-Prot: sp|A0JUU8|TRUB_ARTS2 tRNA pseudouridine synthase B; TrEMBL-Plants: tr|D7M6J7|D7M6J7_ARALL Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0239300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:70043586..70048852) extracted from Lotus japonicus Gifu genome v1.2.
AATCTTTTGAAAGTGAAAATTCAGATTAATCAATCAAGGTTTTGCAGCATTATTTGACTTATCTAAACCTGCGTTTGTTA ACACAATACAGCGGTAGCAAGAAGAAGAAGAAAAAAAAGAAGAAGAAGAAGCTCTGCTTCACTTTGATTTGATCTGAGAA TTCAGAAGTAGCAAAGCACCTTGTGTATTCCTTCCACTTCCACATGCTCAAATCACTCTCTCTAACCCACCTCTCTTCTC TCTTACCCCACACTCGTCCCATGTTCTCTTCCACTTCCAGATTGCTCTGTCACTGCCAATTCCTCCATCTACCTCCATCA TCGCCATTCACCAAACCACAATGCTCCAGATTCCTCTCCACCAATCCCACCCCATACCCACTCCAATACGAGATGATCAT CAACCGCCCCGACACCCCACAAACTCGCCGACGACCTGTTCGACAAAATGCCAATGACGCCCCTTCCGAACCGGACCAAC CCGACGACTCGCTGCAGGGATGGGCCAGCGGTAAACTAGCTTCAGACGCCGAATTGGACCGACCCGGGTCGTCGAAATTG GAACTTGACAAGGCTAAGAGGAAGTACTACAATAAGCGGAGGAAGAGGATGTATGGGTCGGATTCTGAGGATGAGGGGAG GAGGCATGAGGATGGGTTCGTGGAGCTAAAACCGGAGGTTGTGGAGCTTCCTACAATGCACAAGAGGGAGGAGGAGTTGT ATTTCTATGATGCATTTGCTTATCCGTGGGAGAAGGAGAAGCATTACAAGATGGTTTATCAGTTGGAGAAGAAGTATTTC CCTGATCAGTGTCTTGATAAGGCGTTTGTCGAACCGGGGCAGGTGAGTTCGAGTGCAAATGTGAGTGGTAAGGGGAAGGG TAAGAGCAGAGTTGGTGGGGTTGTTAAGGGGGAGAAGAAAGATGAGGAGGTTGATGGTGTTGGTGATGACAGGTTGGTGT TTTTTGAGGAGAAAAAGGAAGTGAAAGAAAAGGGTAAGGATCTTACCGAGAAGAAGGTTGAGGAGTTCTTTAAGGGTTTG AAGAAAGCTCCTGGTAAGGATGGTCAAGTTGATGAGGCAGGGGAGCCATATTTTTCTTCAAGGAGGGCTGGACTCCCTCC CACTTGGGATGGTCCACATGGCACCGTGCTTTTGGTGAACAAACCCAAAGGTGACTTAACGAATTTATCTCACTGTTTTT GCTTGTTTGATTTCTCTTTTCTGGGGATTAAGAGGATACTCCAACCCAGTGGTTCACAATAAAACTGGATTTACTTGTGG GGGAACTAGAAAAGCCAATTGTTGTTGTTAAATGCATGCAAGTTTGAGAATGGATTGAAGGCATCTATTCTGTTACCTTC ACTTTGTTATCACTCTTTGTGGTGGAAAACTAAATGTACCATTCTTTTTATTTTATGTCCTGATTTCGTTTTGTCTACCA AAAGCTACCTTAATAATACTCATGACTAAGTGACCTCCTCTTAGAATGAAAAGATGATATTGCCATATGTACAATACTGC AGCACTAATGGTTCATGAATATGTCTCGTTTTGCATTGAGGTTCCTCAAAACCATGATTTTGACAAAAGAAACAAGTTGC ACCTTTTACCATAACCATGGTTTTGGAAGATCCCAACACAAAATCAAACACACTTCATGCTGTCTGAGCTTCGTTCTTTT CCTGGTCTTGTTTTGATTGATCTCGCAGAATATAAGTTTAGCTGAAATAATATTTGTTTATTGGTGGATATGGCTGTAAA TTTTCACTCAAATTTTGAGGTATGCAATGATGTGTTCTTGAATGATTTATGGCAGGTTGGACTTCATTCACAGTTTGTGG AAAGCTGCGTCGCATTGTCAAAGTGAAAAAGGTTCTTTTCCACAGCGCATCCATATTTAAATTTAATTCATCTTGTAGAC TCACAGGATTAATTTACAGGTAGGCCATGCTGGAACTCTTGACCCAATGGCTACTGGTTTATTGATCGTTTGTATTGGCA AAGCAACAAAAGTGGTAGACAGGTGATTAAAATCAATAGATATTTATTTCCATTTGATTACCAAATATTGGTGTCTGTTT CACAATGTCAAAATTGTTTTGGTTTAAATTTTTGGTCTGACTTATTTTTCTGAACACTTGAACTTTTCTGCTTCAGATAT CAAGGGATGGTTAAGGGTTATAGTGGGGTTTTCCGCTTAGGTGAGGCTACTTCAACATGGGATGCTGATTCGCCAGTGAG TTAATCTGTTTTTCTCATGTGTAAGTTTATGGATCAGAAAACAAATGTACTTTTGCGGTTTTGGCCATCAGTTGGAAGAC TACAAATTAACATGTAAATGATCATGAACAATTAATTTTCAATTCTTAACCTTCTTTGGGAAAAGCGGAAGCAGTCAGGT CCATCCAAATCCAATACTTGTTATTCAGAAGTTGAATAACTTATTTCACCAGTTAAGTTTCAAGGTCTGAATTGTATATA CCACTTAAGTGGATTTCTGTCTGATGTCTTACATATATGATAAATAGATTAGTTTGTTAAAGATAAATTCCTCTAATGAA ATTGATTTTTCTTAGAATAACCAAAGAGTTTGGAGGACATACAATATATCCTTTGTGGCTGAAATGCAAATCCATTCATT ATCTTTCTATATGAAACAATAAATTCTCTGAGTAAAACTGTCAATTAGGAGAGACAATTTTTTTGGGAGTTTGTGGTGCT GTCCAGAATTATTCCTATGAGTCTATGACTGAACCACCAACCATTCAGTGTGTACTGGCCTATTTTTAGTAGCCAACCTG CCATTTATTTGTCTAGAATTTAATTCAATTGCAATATTGGGAGCAGTAACAATTGATTGTTGGTCCATTTGTCAAGACTA CTTAATATTGCAATACATTTTTGTTTTAGTTTAATATTGTACAATTTATCCTCTCATAGGCCAGCTTGATATGTAGGTCA TTCAACGCGAGCCATGGGAGCACATCAAAGATGAGGACATAAAGAAAAAAGCTCTGTCCTTTTGTGGGGAGATTTGGCAA GTTCCTCCGATGTTCTCAGCTATTAAAGTAAGAACATTTCCAGTTCTTGAACCATTTAATTTACGTAATTTCTTTTTAAG TTTTGCAGCTGGATGAGGGCCTGAAGTATGTTATGCTTTACATGTGAGCAAAATATGTAAGGTTATGTGAAACTTGATGT GAATCAAGACATAATTTATTGATTTTAAGGCATTAAAAATGCAATTGTTAGCTATTTCTTTTTAACTTAGGTAAGCTTTT ACACATGAATATGATCAACACAGCTTTGTTACTGAAGCTGTTCAACTTCAGCATCTTGAAATTTTGTTATGTTGGGGTCA TTTATAGAAACTTGGTGTACTAACGAACTCAATTTAGTTGTTTGATCCATCAAGAGGCCGCTTCCTAACGCGAAAAAGGC TTTGTTGTTGTATATTCTTTTAGAGTACTAGTATTTTCTGTTAATTAGTTTGAAGCAACCTGTCCAGTTCCTTAGCCTTA AAAGTTATCATGCTCCATGATAGGTGGGAGGTGAAAAGATGTATGAGAAAGCAAGAAGAGGAGAAAGCATTGAACTTTCG CCTAGAAGAATTTCAATATTCCAGTTTGACATAGAGCGTAGCTTGGATGACAGGTAACGTCTGGAAGCCTCCATTGTCTA TACCCCTTGTTACCCTTGAATCAATATCCAAGTTCACCATCGATAGGATGAAATTAACATTGGTAAACTGCAACATTAAT GCACTTCATAGATCACCAAATCATTTGCTAGTACTAATTTAATCGAGAAACCTGAACTGAGGTTATCATGGGCATTCTTG AAATCCAATTTGTGTACAAATCCTCGACCCTTTGCCCTTCTCATATCCTGAATTGCTTAGTCTTAATTGCTCACAAGGGC AGTACCAAGAATCTACGCTAAGTGGTAGAAACTCCTGAAAGTGTATTAAGCTCCTAAAAAGTAGGAAAAAGTGTTGAATA CCTGCCAATTGAATGATTGCTACTCTGTTAGCTCCAAGCATGAAACACATAGGTTAGGAGATAAATCCCTTATGCGGTCT TTACACAAATAATGAATTATCTGTTTCTAACATATTAGGCATCACTGTCCATATAAGTGCTTGTACCTAGAGGGAGCTTT CTCTTTTAAAAATGTACTTGGCATTTATCTGTTTTGAGTTGAGTTGATTTGTTCTTTTTTCCCTGATGTACTTGTGTTAT ATTTTTCCAGACAAAATTTGATTTTTAGAGTAACATGTTCAAAAGGAACATATATTCGGTCACTCTGCGCCGATTTGGGG AAGGCCCTTGGCAGGTATTAGTTCATTGTTCTCTATTTCAAAATTTTTCTTCCTTACAACTTGAGCAACATGACATGCAG AAATACTTGCTTTGTTTTTGCAGCTGCGCCCATTTAACTGCTCTCCGAAGAGATTCAATCGGTAAGTGGCCTTGGCCGTG GGCCTTCAAGAATGATGGTGATCTTATTTGGATACGGATTAAAGAGCACTTATTGAAGTTTATCTACTAGAAGAAACATT GAATAAGCCACAATAAGCACTCTTTGGTTAGCATCCAAATGGGCTGTGTCTATGCATGTGTACTAATAAACTGTTATGAA ACTTTCAGGGCAATATTCAGCTGATGATGCATGGGAATTTCAAGAATTGGAAGAGGCTATTACCAAAAGTTATCTCTAAC TGCTCTCTTGTTCCCTGCCATATGATCATGAGAGCCATTACATGCATTTTCCTCCTCTGGTAAATACATAAGTGGGGTGT TTTATAAGCCGCTTCTTAATCATATGGTCCTTTCTGGATGTTCCACCCTTCAATTTTTAGATTTAATTTGTGACTTAGTA GTATATAAAGTTGAGAGCAATGTTCTGTAAAATTAATTCATTATTCATTTTTATTAGGAGATTAATTCTTTGAGAAGCGA CAGTCCTGATGTTTCAAGAGATGCTACACAATGTGATGACTTTATGTCAATTTAAAATTTCAATTGACTTAATCTCTTAA AGTTTTGTGTAAATAAATTACTTTGGGGGGTTTGTTACAAGGTTCCCTTGGGCAAAGACTTATAAATGTGTATGGTTAGT ATTTAGTATTCATGGGAATAGTTTTAAATTTAATTTAATTAAAAGGTTTAAATGCACTTTTGAACCCCAAGTTTACATTA TTTGCGATTGTTGACCCTGATCTTATTTTTCTACGAACTGAGACCCTCTCCAGGCAAAAAGACTAGC
CDS sequence (LotjaGi2g1v0239300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCAAATCACTCTCTCTAACCCACCTCTCTTCTCTCTTACCCCACACTCGTCCCATGTTCTCTTCCACTTCCAGATT GCTCTGTCACTGCCAATTCCTCCATCTACCTCCATCATCGCCATTCACCAAACCACAATGCTCCAGATTCCTCTCCACCA ATCCCACCCCATACCCACTCCAATACGAGATGATCATCAACCGCCCCGACACCCCACAAACTCGCCGACGACCTGTTCGA CAAAATGCCAATGACGCCCCTTCCGAACCGGACCAACCCGACGACTCGCTGCAGGGATGGGCCAGCGGTAAACTAGCTTC AGACGCCGAATTGGACCGACCCGGGTCGTCGAAATTGGAACTTGACAAGGCTAAGAGGAAGTACTACAATAAGCGGAGGA AGAGGATGTATGGGTCGGATTCTGAGGATGAGGGGAGGAGGCATGAGGATGGGTTCGTGGAGCTAAAACCGGAGGTTGTG GAGCTTCCTACAATGCACAAGAGGGAGGAGGAGTTGTATTTCTATGATGCATTTGCTTATCCGTGGGAGAAGGAGAAGCA TTACAAGATGGTTTATCAGTTGGAGAAGAAGTATTTCCCTGATCAGTGTCTTGATAAGGCGTTTGTCGAACCGGGGCAGG TGAGTTCGAGTGCAAATGTGAGTGGTAAGGGGAAGGGTAAGAGCAGAGTTGGTGGGGTTGTTAAGGGGGAGAAGAAAGAT GAGGAGGTTGATGGTGTTGGTGATGACAGGTTGGTGTTTTTTGAGGAGAAAAAGGAAGTGAAAGAAAAGGGTAAGGATCT TACCGAGAAGAAGGTTGAGGAGTTCTTTAAGGGTTTGAAGAAAGCTCCTGGTAAGGATGGTCAAGTTGATGAGGCAGGGG AGCCATATTTTTCTTCAAGGAGGGCTGGACTCCCTCCCACTTGGGATGGTCCACATGGCACCGTGCTTTTGGTGAACAAA CCCAAAGGTTGGACTTCATTCACAGTTTGTGGAAAGCTGCGTCGCATTGTCAAAGTGAAAAAGGTAGGCCATGCTGGAAC TCTTGACCCAATGGCTACTGGTTTATTGATCGTTTGTATTGGCAAAGCAACAAAAGTGGTAGACAGATATCAAGGGATGG TTAAGGGTTATAGTGGGGTTTTCCGCTTAGGTGAGGCTACTTCAACATGGGATGCTGATTCGCCAGTGAGTTAA
Protein sequence (LotjaGi2g1v0239300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLKSLSLTHLSSLLPHTRPMFSSTSRLLCHCQFLHLPPSSPFTKPQCSRFLSTNPTPYPLQYEMIINRPDTPQTRRRPVR QNANDAPSEPDQPDDSLQGWASGKLASDAELDRPGSSKLELDKAKRKYYNKRRKRMYGSDSEDEGRRHEDGFVELKPEVV ELPTMHKREEELYFYDAFAYPWEKEKHYKMVYQLEKKYFPDQCLDKAFVEPGQVSSSANVSGKGKGKSRVGGVVKGEKKD EEVDGVGDDRLVFFEEKKEVKEKGKDLTEKKVEEFFKGLKKAPGKDGQVDEAGEPYFSSRRAGLPPTWDGPHGTVLLVNK PKGWTSFTVCGKLRRIVKVKKVGHAGTLDPMATGLLIVCIGKATKVVDRYQGMVKGYSGVFRLGEATSTWDADSPVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 4 | 14 | 11 | - | – | |
| Phobius | 15 | 22 | 8 | - | – | |
| Phobius | 23 | 397 | 375 | - | – | |
| MobiDBLite | 65 | 100 | 36 | - | – | |
| MobiDBLite | 76 | 91 | 16 | - | – | |
| MobiDBLite | 214 | 233 | 20 | - | – | |
| PANTHER | 289 | 396 | 108 | 4.7E-50 | ||
| SUPERFAMILY | 305 | 396 | 92 | 8.96E-29 | ||
| Gene3D | 309 | 397 | 89 | 8.7E-33 | – | |
| Pfam | 334 | 394 | 61 | 4.6E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Pseudouridine synthesis | The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. | ||
| Biological process | RNA modification | The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. | ||
| Molecular function | Pseudouridine synthase activity | Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5. |
Expression pattern of LotjaGi2g1v0239300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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