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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0239300 |
Transcript ID | LotjaGi2g1v0239300.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | tRNA pseudouridine synthase B; TAIR: AT5G14460.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q9RB36|TRUB_FLAJ1 tRNA pseudouridine synthase B; TrEMBL-Plants: tr|A0A072U4X6|A0A072U4X6_MEDTR tRNA pseudouridine synthase B; Found in the gene: LotjaGi2g1v0239300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:70043586..70048852) extracted from Lotus japonicus Gifu genome v1.2.
AATCTTTTGAAAGTGAAAATTCAGATTAATCAATCAAGGTTTTGCAGCATTATTTGACTTATCTAAACCTGCGTTTGTTA ACACAATACAGCGGTAGCAAGAAGAAGAAGAAAAAAAAGAAGAAGAAGAAGCTCTGCTTCACTTTGATTTGATCTGAGAA TTCAGAAGTAGCAAAGCACCTTGTGTATTCCTTCCACTTCCACATGCTCAAATCACTCTCTCTAACCCACCTCTCTTCTC TCTTACCCCACACTCGTCCCATGTTCTCTTCCACTTCCAGATTGCTCTGTCACTGCCAATTCCTCCATCTACCTCCATCA TCGCCATTCACCAAACCACAATGCTCCAGATTCCTCTCCACCAATCCCACCCCATACCCACTCCAATACGAGATGATCAT CAACCGCCCCGACACCCCACAAACTCGCCGACGACCTGTTCGACAAAATGCCAATGACGCCCCTTCCGAACCGGACCAAC CCGACGACTCGCTGCAGGGATGGGCCAGCGGTAAACTAGCTTCAGACGCCGAATTGGACCGACCCGGGTCGTCGAAATTG GAACTTGACAAGGCTAAGAGGAAGTACTACAATAAGCGGAGGAAGAGGATGTATGGGTCGGATTCTGAGGATGAGGGGAG GAGGCATGAGGATGGGTTCGTGGAGCTAAAACCGGAGGTTGTGGAGCTTCCTACAATGCACAAGAGGGAGGAGGAGTTGT ATTTCTATGATGCATTTGCTTATCCGTGGGAGAAGGAGAAGCATTACAAGATGGTTTATCAGTTGGAGAAGAAGTATTTC CCTGATCAGTGTCTTGATAAGGCGTTTGTCGAACCGGGGCAGGTGAGTTCGAGTGCAAATGTGAGTGGTAAGGGGAAGGG TAAGAGCAGAGTTGGTGGGGTTGTTAAGGGGGAGAAGAAAGATGAGGAGGTTGATGGTGTTGGTGATGACAGGTTGGTGT TTTTTGAGGAGAAAAAGGAAGTGAAAGAAAAGGGTAAGGATCTTACCGAGAAGAAGGTTGAGGAGTTCTTTAAGGGTTTG AAGAAAGCTCCTGGTAAGGATGGTCAAGTTGATGAGGCAGGGGAGCCATATTTTTCTTCAAGGAGGGCTGGACTCCCTCC CACTTGGGATGGTCCACATGGCACCGTGCTTTTGGTGAACAAACCCAAAGGTGACTTAACGAATTTATCTCACTGTTTTT GCTTGTTTGATTTCTCTTTTCTGGGGATTAAGAGGATACTCCAACCCAGTGGTTCACAATAAAACTGGATTTACTTGTGG GGGAACTAGAAAAGCCAATTGTTGTTGTTAAATGCATGCAAGTTTGAGAATGGATTGAAGGCATCTATTCTGTTACCTTC ACTTTGTTATCACTCTTTGTGGTGGAAAACTAAATGTACCATTCTTTTTATTTTATGTCCTGATTTCGTTTTGTCTACCA AAAGCTACCTTAATAATACTCATGACTAAGTGACCTCCTCTTAGAATGAAAAGATGATATTGCCATATGTACAATACTGC AGCACTAATGGTTCATGAATATGTCTCGTTTTGCATTGAGGTTCCTCAAAACCATGATTTTGACAAAAGAAACAAGTTGC ACCTTTTACCATAACCATGGTTTTGGAAGATCCCAACACAAAATCAAACACACTTCATGCTGTCTGAGCTTCGTTCTTTT CCTGGTCTTGTTTTGATTGATCTCGCAGAATATAAGTTTAGCTGAAATAATATTTGTTTATTGGTGGATATGGCTGTAAA TTTTCACTCAAATTTTGAGGTATGCAATGATGTGTTCTTGAATGATTTATGGCAGGTTGGACTTCATTCACAGTTTGTGG AAAGCTGCGTCGCATTGTCAAAGTGAAAAAGGTTCTTTTCCACAGCGCATCCATATTTAAATTTAATTCATCTTGTAGAC TCACAGGATTAATTTACAGGTAGGCCATGCTGGAACTCTTGACCCAATGGCTACTGGTTTATTGATCGTTTGTATTGGCA AAGCAACAAAAGTGGTAGACAGGTGATTAAAATCAATAGATATTTATTTCCATTTGATTACCAAATATTGGTGTCTGTTT CACAATGTCAAAATTGTTTTGGTTTAAATTTTTGGTCTGACTTATTTTTCTGAACACTTGAACTTTTCTGCTTCAGATAT CAAGGGATGGTTAAGGGTTATAGTGGGGTTTTCCGCTTAGGTGAGGCTACTTCAACATGGGATGCTGATTCGCCAGTGAG TTAATCTGTTTTTCTCATGTGTAAGTTTATGGATCAGAAAACAAATGTACTTTTGCGGTTTTGGCCATCAGTTGGAAGAC TACAAATTAACATGTAAATGATCATGAACAATTAATTTTCAATTCTTAACCTTCTTTGGGAAAAGCGGAAGCAGTCAGGT CCATCCAAATCCAATACTTGTTATTCAGAAGTTGAATAACTTATTTCACCAGTTAAGTTTCAAGGTCTGAATTGTATATA CCACTTAAGTGGATTTCTGTCTGATGTCTTACATATATGATAAATAGATTAGTTTGTTAAAGATAAATTCCTCTAATGAA ATTGATTTTTCTTAGAATAACCAAAGAGTTTGGAGGACATACAATATATCCTTTGTGGCTGAAATGCAAATCCATTCATT ATCTTTCTATATGAAACAATAAATTCTCTGAGTAAAACTGTCAATTAGGAGAGACAATTTTTTTGGGAGTTTGTGGTGCT GTCCAGAATTATTCCTATGAGTCTATGACTGAACCACCAACCATTCAGTGTGTACTGGCCTATTTTTAGTAGCCAACCTG CCATTTATTTGTCTAGAATTTAATTCAATTGCAATATTGGGAGCAGTAACAATTGATTGTTGGTCCATTTGTCAAGACTA CTTAATATTGCAATACATTTTTGTTTTAGTTTAATATTGTACAATTTATCCTCTCATAGGCCAGCTTGATATGTAGGTCA TTCAACGCGAGCCATGGGAGCACATCAAAGATGAGGACATAAAGAAAAAAGCTCTGTCCTTTTGTGGGGAGATTTGGCAA GTTCCTCCGATGTTCTCAGCTATTAAAGTAAGAACATTTCCAGTTCTTGAACCATTTAATTTACGTAATTTCTTTTTAAG TTTTGCAGCTGGATGAGGGCCTGAAGTATGTTATGCTTTACATGTGAGCAAAATATGTAAGGTTATGTGAAACTTGATGT GAATCAAGACATAATTTATTGATTTTAAGGCATTAAAAATGCAATTGTTAGCTATTTCTTTTTAACTTAGGTAAGCTTTT ACACATGAATATGATCAACACAGCTTTGTTACTGAAGCTGTTCAACTTCAGCATCTTGAAATTTTGTTATGTTGGGGTCA TTTATAGAAACTTGGTGTACTAACGAACTCAATTTAGTTGTTTGATCCATCAAGAGGCCGCTTCCTAACGCGAAAAAGGC TTTGTTGTTGTATATTCTTTTAGAGTACTAGTATTTTCTGTTAATTAGTTTGAAGCAACCTGTCCAGTTCCTTAGCCTTA AAAGTTATCATGCTCCATGATAGGTGGGAGGTGAAAAGATGTATGAGAAAGCAAGAAGAGGAGAAAGCATTGAACTTTCG CCTAGAAGAATTTCAATATTCCAGTTTGACATAGAGCGTAGCTTGGATGACAGGTAACGTCTGGAAGCCTCCATTGTCTA TACCCCTTGTTACCCTTGAATCAATATCCAAGTTCACCATCGATAGGATGAAATTAACATTGGTAAACTGCAACATTAAT GCACTTCATAGATCACCAAATCATTTGCTAGTACTAATTTAATCGAGAAACCTGAACTGAGGTTATCATGGGCATTCTTG AAATCCAATTTGTGTACAAATCCTCGACCCTTTGCCCTTCTCATATCCTGAATTGCTTAGTCTTAATTGCTCACAAGGGC AGTACCAAGAATCTACGCTAAGTGGTAGAAACTCCTGAAAGTGTATTAAGCTCCTAAAAAGTAGGAAAAAGTGTTGAATA CCTGCCAATTGAATGATTGCTACTCTGTTAGCTCCAAGCATGAAACACATAGGTTAGGAGATAAATCCCTTATGCGGTCT TTACACAAATAATGAATTATCTGTTTCTAACATATTAGGCATCACTGTCCATATAAGTGCTTGTACCTAGAGGGAGCTTT CTCTTTTAAAAATGTACTTGGCATTTATCTGTTTTGAGTTGAGTTGATTTGTTCTTTTTTCCCTGATGTACTTGTGTTAT ATTTTTCCAGACAAAATTTGATTTTTAGAGTAACATGTTCAAAAGGAACATATATTCGGTCACTCTGCGCCGATTTGGGG AAGGCCCTTGGCAGGTATTAGTTCATTGTTCTCTATTTCAAAATTTTTCTTCCTTACAACTTGAGCAACATGACATGCAG AAATACTTGCTTTGTTTTTGCAGCTGCGCCCATTTAACTGCTCTCCGAAGAGATTCAATCGGTAAGTGGCCTTGGCCGTG GGCCTTCAAGAATGATGGTGATCTTATTTGGATACGGATTAAAGAGCACTTATTGAAGTTTATCTACTAGAAGAAACATT GAATAAGCCACAATAAGCACTCTTTGGTTAGCATCCAAATGGGCTGTGTCTATGCATGTGTACTAATAAACTGTTATGAA ACTTTCAGGGCAATATTCAGCTGATGATGCATGGGAATTTCAAGAATTGGAAGAGGCTATTACCAAAAGTTATCTCTAAC TGCTCTCTTGTTCCCTGCCATATGATCATGAGAGCCATTACATGCATTTTCCTCCTCTGGTAAATACATAAGTGGGGTGT TTTATAAGCCGCTTCTTAATCATATGGTCCTTTCTGGATGTTCCACCCTTCAATTTTTAGATTTAATTTGTGACTTAGTA GTATATAAAGTTGAGAGCAATGTTCTGTAAAATTAATTCATTATTCATTTTTATTAGGAGATTAATTCTTTGAGAAGCGA CAGTCCTGATGTTTCAAGAGATGCTACACAATGTGATGACTTTATGTCAATTTAAAATTTCAATTGACTTAATCTCTTAA AGTTTTGTGTAAATAAATTACTTTGGGGGGTTTGTTACAAGGTTCCCTTGGGCAAAGACTTATAAATGTGTATGGTTAGT ATTTAGTATTCATGGGAATAGTTTTAAATTTAATTTAATTAAAAGGTTTAAATGCACTTTTGAACCCCAAGTTTACATTA TTTGCGATTGTTGACCCTGATCTTATTTTTCTACGAACTGAGACCCTCTCCAGGCAAAAAGACTAGC
CDS sequence (LotjaGi2g1v0239300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCAAATCACTCTCTCTAACCCACCTCTCTTCTCTCTTACCCCACACTCGTCCCATGTTCTCTTCCACTTCCAGATT GCTCTGTCACTGCCAATTCCTCCATCTACCTCCATCATCGCCATTCACCAAACCACAATGCTCCAGATTCCTCTCCACCA ATCCCACCCCATACCCACTCCAATACGAGATGATCATCAACCGCCCCGACACCCCACAAACTCGCCGACGACCTGTTCGA CAAAATGCCAATGACGCCCCTTCCGAACCGGACCAACCCGACGACTCGCTGCAGGGATGGGCCAGCGGTAAACTAGCTTC AGACGCCGAATTGGACCGACCCGGGTCGTCGAAATTGGAACTTGACAAGGCTAAGAGGAAGTACTACAATAAGCGGAGGA AGAGGATGTATGGGTCGGATTCTGAGGATGAGGGGAGGAGGCATGAGGATGGGTTCGTGGAGCTAAAACCGGAGGTTGTG GAGCTTCCTACAATGCACAAGAGGGAGGAGGAGTTGTATTTCTATGATGCATTTGCTTATCCGTGGGAGAAGGAGAAGCA TTACAAGATGGTTTATCAGTTGGAGAAGAAGTATTTCCCTGATCAGTGTCTTGATAAGGCGTTTGTCGAACCGGGGCAGG TGAGTTCGAGTGCAAATGTGAGTGGTAAGGGGAAGGGTAAGAGCAGAGTTGGTGGGGTTGTTAAGGGGGAGAAGAAAGAT GAGGAGGTTGATGGTGTTGGTGATGACAGGTTGGTGTTTTTTGAGGAGAAAAAGGAAGTGAAAGAAAAGGGTAAGGATCT TACCGAGAAGAAGGTTGAGGAGTTCTTTAAGGGTTTGAAGAAAGCTCCTGGTAAGGATGGTCAAGTTGATGAGGCAGGGG AGCCATATTTTTCTTCAAGGAGGGCTGGACTCCCTCCCACTTGGGATGGTCCACATGGCACCGTGCTTTTGGTGAACAAA CCCAAAGGTTGGACTTCATTCACAGTTTGTGGAAAGCTGCGTCGCATTGTCAAAGTGAAAAAGGTAGGCCATGCTGGAAC TCTTGACCCAATGGCTACTGGTTTATTGATCGTTTGTATTGGCAAAGCAACAAAAGTGGTAGACAGATATCAAGGGATGG TTAAGGGTTATAGTGGGGTTTTCCGCTTAGGTGAGGCTACTTCAACATGGGATGCTGATTCGCCAGTCATTCAACGCGAG CCATGGGAGCACATCAAAGATGAGGACATAAAGAAAAAAGCTCTGTCCTTTTGTGGGGAGATTTGGCAAGTTCCTCCGAT GTTCTCAGCTATTAAAGTGGGAGGTGAAAAGATGTATGAGAAAGCAAGAAGAGGAGAAAGCATTGAACTTTCGCCTAGAA GAATTTCAATATTCCAGTTTGACATAGAGCGTAGCTTGGATGACAGACAAAATTTGATTTTTAGAGTAACATGTTCAAAA GGAACATATATTCGGTCACTCTGCGCCGATTTGGGGAAGGCCCTTGGCAGCTGCGCCCATTTAACTGCTCTCCGAAGAGA TTCAATCGGGCAATATTCAGCTGATGATGCATGGGAATTTCAAGAATTGGAAGAGGCTATTACCAAAAGTTATCTCTAA
Protein sequence (LotjaGi2g1v0239300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLKSLSLTHLSSLLPHTRPMFSSTSRLLCHCQFLHLPPSSPFTKPQCSRFLSTNPTPYPLQYEMIINRPDTPQTRRRPVR QNANDAPSEPDQPDDSLQGWASGKLASDAELDRPGSSKLELDKAKRKYYNKRRKRMYGSDSEDEGRRHEDGFVELKPEVV ELPTMHKREEELYFYDAFAYPWEKEKHYKMVYQLEKKYFPDQCLDKAFVEPGQVSSSANVSGKGKGKSRVGGVVKGEKKD EEVDGVGDDRLVFFEEKKEVKEKGKDLTEKKVEEFFKGLKKAPGKDGQVDEAGEPYFSSRRAGLPPTWDGPHGTVLLVNK PKGWTSFTVCGKLRRIVKVKKVGHAGTLDPMATGLLIVCIGKATKVVDRYQGMVKGYSGVFRLGEATSTWDADSPVIQRE PWEHIKDEDIKKKALSFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSK GTYIRSLCADLGKALGSCAHLTALRRDSIGQYSADDAWEFQELEEAITKSYL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 3 | 3 | - | – | |
Phobius | 1 | 22 | 22 | - | – | |
Phobius | 4 | 14 | 11 | - | – | |
Phobius | 15 | 22 | 8 | - | – | |
Phobius | 23 | 532 | 510 | - | – | |
MobiDBLite | 65 | 100 | 36 | - | – | |
MobiDBLite | 76 | 91 | 16 | - | – | |
MobiDBLite | 214 | 233 | 20 | - | – | |
PANTHER | 289 | 529 | 241 | 5.4E-122 | ||
Gene3D | 309 | 531 | 223 | 2.1E-85 | – | |
Hamap | 312 | 532 | 221 | 15.506 | ||
TIGRFAM | 314 | 523 | 210 | 2.4E-65 | ||
SUPERFAMILY | 314 | 527 | 214 | 1.1E-72 | ||
CDD | 315 | 526 | 212 | 1.66139E-101 | ||
Pfam | 334 | 484 | 151 | 2.3E-51 | ||
Pfam | 485 | 528 | 44 | 8.3E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Pseudouridine synthesis | The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs. | ||
Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. | ||
Biological process | RNA modification | The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. | ||
Molecular function | Pseudouridine synthase activity | Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5. |
Expression pattern of LotjaGi2g1v0239300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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