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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0239900 |
| Transcript ID | LotjaGi2g1v0239900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CRS1/YhbY (CRM) domain protein; TAIR: AT3G27550.2 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; TrEMBL-Plants: tr|A0A0B2QEH4|A0A0B2QEH4_GLYSO Putative CRM domain-containing protein, chloroplastic; Found in the gene: LotjaGi2g1v0239900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:70088845..70093945) extracted from Lotus japonicus Gifu genome v1.2.
AACCTTGTTGTAACAAAAAAAAAGTCTCCAAAACCCTGTGATAGTTTACCCTCGCCTCGCCCATGTCTAAACCCAAAACG AGAGAGAAGTGCAGAGTGTGAGTAATCGGTGACCAAAACGCAGCACGAAATCAAGAATGTTCGGTGCCAGAAATCTGCAG AGGCAGTGCTTCAAGCCCCTCTCTTCTCTCCTTCAACTTCAACTTCAACTTCACTCCAATCTCTACAAGTACCTATTCTC TACCCTTTTCCCCTCTATCTCTCAATATATCACTTATAATTCATAAATGGATCAAACCCTTTTGCTCTTTCCCCTCAAAG TTTCTAACTTCACCCCATTCACACCCCATTTCTTCTTAACTATAGCTTCTCACTGTTATTACTCTCTTTTGTAAATTCTT CATTTTTTCAATCATTTTTTTTAATTTTTTAACTCCCATCAGTTTGAAATTTATTAGTTTTGATTGAAGTGCATTTTGTT AGTTGAAATAATGATTATTTTGTAATGGGGTATTTTTTTTTTGAGTTCAGAAATGTTGTGCCTTTAGGACATAGGACTGA GCAGAGCAACATAGTTAAAGTGGAGCCGTACCATGATGTTGGTTTGTGTGGTTATGTTAAGCCATTTAGTTTCATGAATG GATCATCGTCGCGGGCGATGTCAACATCGAAAGGAAGGAGCATGCGAAGCAAGGTGGAGAAGAGGATGCAGAAGGAGTCT GGTAAGACATTAAGGGAGATACGTAGAGCTAAGAAATTGAAGAAGAAGCTTATGACAGAAGAAGAGAGGCTTGTTTACAA CCTCAAAAGAGTATGTTATCTAACTGCCCTTCTAATGGTTGTTTGGACTTTACTTTGTTATCCATGTTTTTACTTTCATA CTTTGTTTTGAGATGTAATAGTTGTCTTAGATTGTGAATTTGAACTTTGATGCAGTTTGAAAGTTCTGTATTCTAATTTT AAATGACTTGGACTATATTACAAAGTATTTACAATAACAAAAATAAATATGCCTGCATGTTACTTCTGTGTTAAAGTGGT AAACAGAATTGGCTCATATAGGAGATACCTGAACTTAGAGTTCTGTCCAAAAAGAGTCCAGACTCAAGAGTTTCTGTGAT CACAACTTTTGTTTGTATGACTATTCCATTGATTGATTGAGAGTTGTGAGGTCCAGGGTACCACAAGGAAGTAGGAATTG GGTTAAATTAAATAGATGAGAACTATGGGAACTATCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTATTGCTTGGGATTGT TTTTCCTTCTTCATTGAAGATATTGAATATTCCCCATTAGCTTTAAGCTGTTGTCATTTTAGTTACTTATTTGGTTTTGA TTGTTTAGTTATTAGCAGCACATAGAAGATAATCATGAAGTGAATTTTTCAAGTCATGATAATTGATTGCATGTTTGTAC TACCTGATAAATTTTTTGCTTGATTTTGGTGTAGTGCTCAAACATGGTATATAGTCTTGTGAAAAGGGTAGTGGGAGGCA AAAAGAACATGGGGAGATATTGTTAAAAATGATCTTATTATCAATAATATTCCCTTTAATTTGGTTTTTTATCGAGCTCA ATGGCGTAGTGTGATCCATATAGCTGACCTCACTTAGTGGGATAAGGCTTTTGTTGTTGTTGTTGTTGTTTGTTTGGCGT AGTGGTCGTTATATGAACATTTGGTTAAATCTTACTTGCCTACCTTCCAACTATTTCAGGCGAAGAAGAAAGTGGCATTG CTATTGCAAAAACTCAAGAAATATGAGCTACCAGATCTGTCTTCTCCTCGGCATGACCCGGAGCTCTTAACACCTGAGCA GCTTCAGGCATATAAAAAAGTTGGATTCAAGAACAAGAACTATGTCCCTGTTGGTGTTCGTGGAGTCTTTGGAGGAGTTG TGCAAAACATGCATCTCCATTGGAAGTTCCATGAGACTGTGCAAGTTTGTTGTGACAATTTCCCCAAGGAAAAAATAAAA GAAATGGCTTCAATGCTTGCAAGATTGAGTGGTGGGATTGTGATAAATGTTCACGATGTGAAAACAATCATTATGTTCCG TGGTAGAAACTATCGTCAACCCAAAAATTTGATACCTATTAACACCCTTACAAAGAGGAAGGTATGGTTGCATTGTTATA TTCCTGTTAGAATATATGAAAAAAAATTATAATATTTGTATTGTATCTTAAAGAAATTTAGAACATATCTGTTAGGATTA GATTCCATATTTCTTTTTACTTCATAATTCGTTTCCTTATTTACTTTGGATTAGGAGTCTATTAGTTATCATGATTAGTT CCTTTATTCAATTAGTTAAGGATTCAGATAAAAAGATGTAGGTTTGATAACTCAAATCTGCTTGTTACTTTTTTTAATTA AAAAGAATTGTCTGGTCCCTAGTTATGGTATATACTGTACAAAGAACTTTGTGGTGCCGGAGGTAATGTATTTTTTCCCA ATGTTGTATACAGGCTCTATTCAAGGCCAGATTTGAGCAAGCTCTTGAATCTCAGAAGTTAAACATAAAGAAACTAGAAC AGCAGCTCCGACGGATGGGAGTAAATCCTGAGGATCCAAGTGCTATGGCCAGCATCCAAAGAGTCGCTTCCACGTTTTTC AATGCCATTGACAAGAAAGAGGGAAGTCCTTACGTGTTCCGTGACGGAAAGCAGTCAATAACAGAACCTATTGAAGATAA AGGAGAGTCAGAGCCTTCTTTTGATAGTGATCAGGAAGAGCTAGATCAATTCATTGCTGATATAGAGGATGCAGCAGATA AAGAATATGAAGCTGAAGAGGCCAAAGAAAATGAAGAGATGAGCAGAATTAGATATTGGAACAAAGAAGATTTTGGTGGA AGATTCAGAAGATCAGATGTTTCTAGAAATGATGACTATGATGGTGAGGTTAGAGTCTCAAGGGCTTGGCAGACTGCACG TCCTAAGCATCGGGCTAGGGATAGTGATGATGAAGAGAATGCCCATTCTGATAATGATGACGGTGATGATGATTTTGCTG GAAGATTCAAAAGATCAGGTGTTTCTAGAAATGATGACTATGATGGTGAGGTTAGAGTCTCAAGGGCTTGGCAGACTGCA CGCCCTAAGCACCGGGCTAGGGATAGTGCTGATGAAGAGAATGCCCATTCTGACAATGATGACAATGATGAGTGGCATTC CAGTAATATTGCTGATGATAGTGATATTGATAGCAATGGCTCTAATGAAGGTAGAGGTAGGTTCAAGGAAAGTAGAACGG GGAGAGAGATGGGTAGGACCCGAGTCAATGGAAGTCCAAATAGACACGTTGAAGGTAAATTTAGGAGGAACATGGCCATA GAAGATTCTGAATCAGAAGGCATGCTTAGTGATGTTGAGAATGCAATGTGGGAGTCTGATGAGGATGAAAATGACTCAGG ACATCTGAGACAGGTCAGGGACAACTACAAGAGTAGCAGCAGTGATGATGAGCACACGTTTCAAATAAAGAGAGACAAAA AGAATGGTATGAGGGATCATAAGCGTAAGGTTGATGATCCCGCTCCATATCATAGTAGTTTTGATGCACCAAAGAGTGTG AGAGGGACCCAAGAAGGAAATGGCAGAACCGATTTTGAGTCCACAGATGTATTTAGCGGTCGAGAAAGCTGGTTGTGGGA TTCAGATGCTGAGGAGGACTCAAGAGTATCAAGATCTGCTAGGGATGGGAACCACCCCACAAGTCAAAATAGCAATGTGG TCAAAAGTGATATCCATAAGAGGAGAACACCAAAAGAAGCTGATGAGGCTTGGGACAGTGACTAGCCCAGTAAATGTTAG ATCATATTTCTAGGATGTTTGGATCAACTCATCTTTCATCAGAATCGTTTTTGAAACCCAAGAACTACTCACAGAAGCTT CTCCCCATAATTGATTCTGCCTTGAGAATCAATTGTAGAAGGATATTCAAATATGCACTTGATTATGGTATTTATTTTGG ACTGTGTTTGACAAGCGGACATTGTTTTCTGGTCAAAGACAAGCAGACTTGAAACAAGAAATTGGTCCAAACAAAATCAA GAAGGTATGAAGCACAAGATAGCCTAATTTTTTCAGTTCTCACATGGAGCTTCCTCTTACTATTAACCTGATAGTAATGT TATCTGCACAAGTTACTACTGCACTTCCAGTCATATGATGCATGTGGCATATTTTTTTAGTGTTGTTTGAGGAATCAAAC TTGGACCTTATGCAAAGATTATTGTTTGAATGGAAGTTTTGATCGTGAAGGAATTGAATTTAATCAATTGAAATAGAAAG AAATGTGGAATTCATTGATTAATTTGTAACTAATAAGGTACGTAAGATATGTCCAATGTTAAGTGCATGTTTGGAAAACC TTCTATAGAGACTTTTAGAGAGAACCATTTCTAGAGCAGAACCATTTCTAGATAGTTTTTGAGTTTTAGAATTGTTTCTG ATAAAAAAGAAGCTCATCCAAACATACTATAAGTCACACATGTCAATCGAATCCTAGTCTTGCTAAATGGTAGCTCTACT TGGGCAGGTCTTAGAGGCTATGAGAAGAAACACAGACAAGCATTAAACAAATAGGAATGATTTTTAATGCATTTTTTGTC AGGGGCAAATATGTATCTTTTTCTGACTATATTAAATAAAACCCACAATATGAATGTGCTTGTTGCATAGATGCAATGCA AATGAGCATATGATGTATATATTTATATGTAGCCATGAAGTCTAATTAACTCAAGTCTGGTCTGCTCTAGAAAAGTCTTC CATTTCAGAAGTTCTAGGCACATAATGATATTCTACAGCAGAATTTGCCAAGAATGGAAAGACAATTCTGAAGTGTCTAT GATGCACTCTTATCATTTAGGATTATGGAATGTGATTGACTCTGATCGAGTCGGGGTACTCAAATGTTAATTGATCTTTA TGGCGTGCTTCTTATATCAATTAGAAATTTTATCCATAGGAAAAAAGTATCTAGCATATCT
CDS sequence (LotjaGi2g1v0239900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCGGTGCCAGAAATCTGCAGAGGCAGTGCTTCAAGCCCCTCTCTTCTCTCCTTCAACTTCAACTTCAACTTCACTC CAATCTCTACAAAAATGTTGTGCCTTTAGGACATAGGACTGAGCAGAGCAACATAGTTAAAGTGGAGCCGTACCATGATG TTGGTTTGTGTGGTTATGTTAAGCCATTTAGTTTCATGAATGGATCATCGTCGCGGGCGATGTCAACATCGAAAGGAAGG AGCATGCGAAGCAAGGTGGAGAAGAGGATGCAGAAGGAGTCTGGTAAGACATTAAGGGAGATACGTAGAGCTAAGAAATT GAAGAAGAAGCTTATGACAGAAGAAGAGAGGCTTGTTTACAACCTCAAAAGAGCGAAGAAGAAAGTGGCATTGCTATTGC AAAAACTCAAGAAATATGAGCTACCAGATCTGTCTTCTCCTCGGCATGACCCGGAGCTCTTAACACCTGAGCAGCTTCAG GCATATAAAAAAGTTGGATTCAAGAACAAGAACTATGTCCCTGTTGGTGTTCGTGGAGTCTTTGGAGGAGTTGTGCAAAA CATGCATCTCCATTGGAAGTTCCATGAGACTGTGCAAGTTTGTTGTGACAATTTCCCCAAGGAAAAAATAAAAGAAATGG CTTCAATGCTTGCAAGATTGAGTGGTGGGATTGTGATAAATGTTCACGATGTGAAAACAATCATTATGTTCCGTGGTAGA AACTATCGTCAACCCAAAAATTTGATACCTATTAACACCCTTACAAAGAGGAAGGCTCTATTCAAGGCCAGATTTGAGCA AGCTCTTGAATCTCAGAAGTTAAACATAAAGAAACTAGAACAGCAGCTCCGACGGATGGGAGTAAATCCTGAGGATCCAA GTGCTATGGCCAGCATCCAAAGAGTCGCTTCCACGTTTTTCAATGCCATTGACAAGAAAGAGGGAAGTCCTTACGTGTTC CGTGACGGAAAGCAGTCAATAACAGAACCTATTGAAGATAAAGGAGAGTCAGAGCCTTCTTTTGATAGTGATCAGGAAGA GCTAGATCAATTCATTGCTGATATAGAGGATGCAGCAGATAAAGAATATGAAGCTGAAGAGGCCAAAGAAAATGAAGAGA TGAGCAGAATTAGATATTGGAACAAAGAAGATTTTGGTGGAAGATTCAGAAGATCAGATGTTTCTAGAAATGATGACTAT GATGGTGAGGTTAGAGTCTCAAGGGCTTGGCAGACTGCACGTCCTAAGCATCGGGCTAGGGATAGTGATGATGAAGAGAA TGCCCATTCTGATAATGATGACGGTGATGATGATTTTGCTGGAAGATTCAAAAGATCAGGTGTTTCTAGAAATGATGACT ATGATGGTGAGGTTAGAGTCTCAAGGGCTTGGCAGACTGCACGCCCTAAGCACCGGGCTAGGGATAGTGCTGATGAAGAG AATGCCCATTCTGACAATGATGACAATGATGAGTGGCATTCCAGTAATATTGCTGATGATAGTGATATTGATAGCAATGG CTCTAATGAAGGTAGAGGTAGGTTCAAGGAAAGTAGAACGGGGAGAGAGATGGGTAGGACCCGAGTCAATGGAAGTCCAA ATAGACACGTTGAAGGTAAATTTAGGAGGAACATGGCCATAGAAGATTCTGAATCAGAAGGCATGCTTAGTGATGTTGAG AATGCAATGTGGGAGTCTGATGAGGATGAAAATGACTCAGGACATCTGAGACAGGTCAGGGACAACTACAAGAGTAGCAG CAGTGATGATGAGCACACGTTTCAAATAAAGAGAGACAAAAAGAATGGTATGAGGGATCATAAGCGTAAGGTTGATGATC CCGCTCCATATCATAGTAGTTTTGATGCACCAAAGAGTGTGAGAGGGACCCAAGAAGGAAATGGCAGAACCGATTTTGAG TCCACAGATGTATTTAGCGGTCGAGAAAGCTGGTTGTGGGATTCAGATGCTGAGGAGGACTCAAGAGTATCAAGATCTGC TAGGGATGGGAACCACCCCACAAGTCAAAATAGCAATGTGGTCAAAAGTGATATCCATAAGAGGAGAACACCAAAAGAAG CTGATGAGGCTTGGGACAGTGACTAG
Protein sequence (LotjaGi2g1v0239900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFGARNLQRQCFKPLSSLLQLQLQLHSNLYKNVVPLGHRTEQSNIVKVEPYHDVGLCGYVKPFSFMNGSSSRAMSTSKGR SMRSKVEKRMQKESGKTLREIRRAKKLKKKLMTEEERLVYNLKRAKKKVALLLQKLKKYELPDLSSPRHDPELLTPEQLQ AYKKVGFKNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMASMLARLSGGIVINVHDVKTIIMFRGR NYRQPKNLIPINTLTKRKALFKARFEQALESQKLNIKKLEQQLRRMGVNPEDPSAMASIQRVASTFFNAIDKKEGSPYVF RDGKQSITEPIEDKGESEPSFDSDQEELDQFIADIEDAADKEYEAEEAKENEEMSRIRYWNKEDFGGRFRRSDVSRNDDY DGEVRVSRAWQTARPKHRARDSDDEENAHSDNDDGDDDFAGRFKRSGVSRNDDYDGEVRVSRAWQTARPKHRARDSADEE NAHSDNDDNDEWHSSNIADDSDIDSNGSNEGRGRFKESRTGREMGRTRVNGSPNRHVEGKFRRNMAIEDSESEGMLSDVE NAMWESDEDENDSGHLRQVRDNYKSSSSDDEHTFQIKRDKKNGMRDHKRKVDDPAPYHSSFDAPKSVRGTQEGNGRTDFE STDVFSGRESWLWDSDAEEDSRVSRSARDGNHPTSQNSNVVKSDIHKRRTPKEADEAWDSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 437 | 437 | 3.5E-262 | ||
| PANTHER | 1 | 437 | 437 | 3.5E-262 | – | |
| MobiDBLite | 70 | 96 | 27 | - | – | |
| MobiDBLite | 81 | 96 | 16 | - | – | |
| ProSiteProfiles | 152 | 249 | 98 | 18.358 | ||
| SUPERFAMILY | 153 | 247 | 95 | 5.49E-20 | ||
| Pfam | 154 | 238 | 85 | 7.6E-16 | ||
| SMART | 154 | 238 | 85 | 2.8E-17 | ||
| Coils | 262 | 289 | 28 | - | – | |
| MobiDBLite | 320 | 345 | 26 | - | – | |
| MobiDBLite | 388 | 701 | 314 | - | – | |
| MobiDBLite | 388 | 405 | 18 | - | – | |
| MobiDBLite | 434 | 459 | 26 | - | – | |
| PANTHER | 437 | 701 | 265 | 3.5E-262 | ||
| PANTHER | 437 | 701 | 265 | 3.5E-262 | – | |
| MobiDBLite | 468 | 498 | 31 | - | – | |
| MobiDBLite | 505 | 524 | 20 | - | – | |
| MobiDBLite | 533 | 549 | 17 | - | – | |
| MobiDBLite | 568 | 616 | 49 | - | – | |
| MobiDBLite | 624 | 641 | 18 | - | – | |
| MobiDBLite | 652 | 667 | 16 | - | – | |
| MobiDBLite | 682 | 701 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi2g1v0239900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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