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IPR035920 is a YhbY-like superfamily.
<p>Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants [[cite:PUB00043747]]. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing [[cite:PUB00044700]]. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes [[cite:PUB00043747]]. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [[cite:PUB00019354]].</p>
This description is obtained from EB-eye REST.
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | CRS2-associated factor 1, chloroplastic; TAIR: AT4G31010.1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|Q8VYD9|CAF1M_ARATH CRS2-associated factor 1, mitochondrial; TrEMBL-Plants: tr|A0A151SIQ3|A0A151SIQ3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0169500 | 11 | ||
– | Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT5G16180.1 maize chloroplast splicing factor-like protein; Swiss-Prot: sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TrEMBL-Plants: tr|K7MVH3|K7MVH3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0547600 | 12 | ||
– | Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G18390.1 CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|A7XN92|CFM3_MAIZE CRM-domain containing factor CFM3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0B2RJN1|A0A0B2RJN1_GLYSO Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Found in the gene: LotjaGi2g1v0206300 | 11 | ||
– | CRS2-associated factor 1, chloroplastic; TAIR: AT2G20020.1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|Q9SL79|CAF1P_ARATH CRS2-associated factor 1, chloroplastic; TrEMBL-Plants: tr|I1J815|I1J815_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0222200 | 10 | ||
– | CRS1/YhbY (CRM) domain protein; TAIR: AT3G27550.2 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; TrEMBL-Plants: tr|A0A0B2QEH4|A0A0B2QEH4_GLYSO Putative CRM domain-containing protein, chloroplastic; Found in the gene: LotjaGi2g1v0239900 | 11 | ||
– | Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|A0A1J7HHY7|A0A1J7HHY7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0251500 | 16 | ||
– | Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|A0A1J7HHY7|A0A1J7HHY7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0251500 | 16 | ||
– | Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|A0A1J7HHY7|A0A1J7HHY7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0251500 | 16 | ||
– | Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|A0A1J7HHY7|A0A1J7HHY7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0251500 | 16 | ||
– | Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|A0A1J7HHY7|A0A1J7HHY7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0251500 | 16 | ||
– | Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|I1N5X8|I1N5X8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0255900 | 9 | ||
– | Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|I1N5X8|I1N5X8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0255900 | 9 | ||
– | Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|I1N5X8|I1N5X8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0255900 | 9 | ||
– | Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|I1N5X8|I1N5X8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0256000 | 8 | ||
– | Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|I1N5X8|I1N5X8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0256000 | 8 | ||
– | CRS2-associated factor 1; TAIR: AT5G54890.1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|Q9FFU1|CAF2M_ARATH CRS2-associated factor 2, mitochondrial; TrEMBL-Plants: tr|V7C8Q9|V7C8Q9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0284800 | 10 | ||
– | CRS2-associated factor 1; TAIR: AT5G54890.1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|Q9FFU1|CAF2M_ARATH CRS2-associated factor 2, mitochondrial; TrEMBL-Plants: tr|A0A0L9USQ4|A0A0L9USQ4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0284800 | 10 | ||
– | CRS1/YhbY (CRM) domain protein; TAIR: AT2G28480.1 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; TrEMBL-Plants: tr|A0A151TG13|A0A151TG13_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0498800 | 16 | ||
– | CRS1/YhbY (CRM) domain protein; TAIR: AT2G28480.1 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; TrEMBL-Plants: tr|A0A151TG13|A0A151TG13_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0498800 | 13 | ||
– | CRS1/YhbY (CRM) domain protein; TAIR: AT2G28480.1 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; TrEMBL-Plants: tr|A0A151TG13|A0A151TG13_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0498800 | 13 | ||
– | RNA-binding CRS1 / YhbY (CRM) domain protein; TAIR: AT2G21350.1 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|P54454|YQEI_BACSU Probable RNA-binding protein YqeI; TrEMBL-Plants: tr|I3S7L9|I3S7L9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0513600 | 17 | ||
– | CRS2-associated factor 1, chloroplastic; TAIR: AT1G23400.1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|Q9LDA9|CAF2P_ARATH CRS2-associated factor 2, chloroplastic; TrEMBL-Plants: tr|A0A1J7GVW5|A0A1J7GVW5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0153800 | 11 | ||
– | Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT4G29750.1 CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|A7XN92|CFM3_MAIZE CRM-domain containing factor CFM3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0B2QCH4|A0A0B2QCH4_GLYSO Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Found in the gene: LotjaGi4g1v0310200 | 11 | ||
– | CRS2-associated factor 1, chloroplastic; TAIR: AT2G20020.1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic; TrEMBL-Plants: tr|K7L4R1|K7L4R1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0446800 | 10 | ||
– | Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G18390.1 CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|A7XN92|CFM3_MAIZE CRM-domain containing factor CFM3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|K7L4X1|K7L4X1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0453100 | 16 | ||
– | CRS1 / YhbY (CRM) domain-containing protein; TAIR: AT4G13070.1 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; TrEMBL-Plants: tr|K7L4Y2|K7L4Y2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0454900 | 11 | ||
– | CRS1 / YhbY (CRM) domain-containing protein; TAIR: AT4G13070.1 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; TrEMBL-Plants: tr|K7L4Y2|K7L4Y2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0454900 | 11 | ||
– | Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G23070.1 CRM family member 3A; Swiss-Prot: sp|F4J2U9|CFM3A_ARATH CRM-domain containing factor CFM3A, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151T1A4|A0A151T1A4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0186400 | 12 | ||
– | CRS1/YhbY (CRM) domain protein; TAIR: AT3G25440.1 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; TrEMBL-Plants: tr|A0A1J7I103|A0A1J7I103_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0076500 | 12 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
mobidb-lite | MobiDBLite | 1 | 3.45 |