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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR035920
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We have found 29 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.580s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0169500.1
n.a. CRS2-associated factor 1, chloroplastic; TAIR: AT4G31010.1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|Q8VYD9|CAF1M_ARATH CRS2-associated factor 1, mitochondrial; TrEMBL-Plants: tr|A0A151SIQ3|A0A151SIQ3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0169500 LjG1.1_chr1 32193783 32212216 -
3 domain predictions
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LotjaGi1g1v0547600.1
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT5G16180.1 maize chloroplast splicing factor-like protein; Swiss-Prot: sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TrEMBL-Plants: tr|K7MVH3|K7MVH3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0547600 LjG1.1_chr1 107763333 107771312 -
3 domain predictions
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LotjaGi2g1v0206300.1
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G18390.1 CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|A7XN92|CFM3_MAIZE CRM-domain containing factor CFM3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0B2RJN1|A0A0B2RJN1_GLYSO Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Found in the gene: LotjaGi2g1v0206300 LjG1.1_chr2 64983064 64990666 +
3 domain predictions
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LotjaGi2g1v0222200.1
n.a. CRS2-associated factor 1, chloroplastic; TAIR: AT2G20020.1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|Q9SL79|CAF1P_ARATH CRS2-associated factor 1, chloroplastic; TrEMBL-Plants: tr|I1J815|I1J815_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0222200 LjG1.1_chr2 67762389 67767302 -
3 domain predictions
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LotjaGi2g1v0239900.1
n.a. CRS1/YhbY (CRM) domain protein; TAIR: AT3G27550.2 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; TrEMBL-Plants: tr|A0A0B2QEH4|A0A0B2QEH4_GLYSO Putative CRM domain-containing protein, chloroplastic; Found in the gene: LotjaGi2g1v0239900 LjG1.1_chr2 70088845 70093945 +
2 domain predictions
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LotjaGi2g1v0251500.1
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|A0A1J7HHY7|A0A1J7HHY7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0251500 LjG1.1_chr2 71709458 71719279 -
3 domain predictions
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LotjaGi2g1v0251500.2
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|A0A1J7HHY7|A0A1J7HHY7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0251500 LjG1.1_chr2 71709458 71719279 -
3 domain predictions
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LotjaGi2g1v0251500.3
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|A0A1J7HHY7|A0A1J7HHY7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0251500 LjG1.1_chr2 71709458 71719279 -
3 domain predictions
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LotjaGi2g1v0251500.4
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|A0A1J7HHY7|A0A1J7HHY7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0251500 LjG1.1_chr2 71709823 71719268 -
3 domain predictions
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LotjaGi2g1v0251500.5
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|A0A1J7HHY7|A0A1J7HHY7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0251500 LjG1.1_chr2 71710148 71719356 -
3 domain predictions
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LotjaGi2g1v0255900.1
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|I1N5X8|I1N5X8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0255900 LjG1.1_chr2 72216805 72227819 +
2 domain predictions
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LotjaGi2g1v0255900.2
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|I1N5X8|I1N5X8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0255900 LjG1.1_chr2 72216917 72227143 +
2 domain predictions
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LotjaGi2g1v0255900.3
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|I1N5X8|I1N5X8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0255900 LjG1.1_chr2 72216928 72227024 +
2 domain predictions
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LotjaGi2g1v0256000.1
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|I1N5X8|I1N5X8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0256000 LjG1.1_chr2 72245714 72249744 +
2 domain predictions
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LotjaGi2g1v0256000.2
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|I1N5X8|I1N5X8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0256000 LjG1.1_chr2 72245837 72248748 +
2 domain predictions
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LotjaGi2g1v0284800.1
n.a. CRS2-associated factor 1; TAIR: AT5G54890.1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|Q9FFU1|CAF2M_ARATH CRS2-associated factor 2, mitochondrial; TrEMBL-Plants: tr|V7C8Q9|V7C8Q9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0284800 LjG1.1_chr2 75770572 75795484 +
3 domain predictions
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LotjaGi2g1v0284800.3
n.a. CRS2-associated factor 1; TAIR: AT5G54890.1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|Q9FFU1|CAF2M_ARATH CRS2-associated factor 2, mitochondrial; TrEMBL-Plants: tr|A0A0L9USQ4|A0A0L9USQ4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0284800 LjG1.1_chr2 75775442 75789215 +
3 domain predictions
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LotjaGi3g1v0498800.1
n.a. CRS1/YhbY (CRM) domain protein; TAIR: AT2G28480.1 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; TrEMBL-Plants: tr|A0A151TG13|A0A151TG13_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0498800 LjG1.1_chr3 91750064 91757893 +
3 domain predictions
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LotjaGi3g1v0498800.2
n.a. CRS1/YhbY (CRM) domain protein; TAIR: AT2G28480.1 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; TrEMBL-Plants: tr|A0A151TG13|A0A151TG13_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0498800 LjG1.1_chr3 91750064 91757893 +
3 domain predictions
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LotjaGi3g1v0498800.3
n.a. CRS1/YhbY (CRM) domain protein; TAIR: AT2G28480.1 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; TrEMBL-Plants: tr|A0A151TG13|A0A151TG13_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0498800 LjG1.1_chr3 91754148 91757663 +
3 domain predictions
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LotjaGi3g1v0513600.1
n.a. RNA-binding CRS1 / YhbY (CRM) domain protein; TAIR: AT2G21350.1 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|P54454|YQEI_BACSU Probable RNA-binding protein YqeI; TrEMBL-Plants: tr|I3S7L9|I3S7L9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0513600 LjG1.1_chr3 93061461 93066185 +
3 domain predictions
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LotjaGi4g1v0153800.1
n.a. CRS2-associated factor 1, chloroplastic; TAIR: AT1G23400.1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|Q9LDA9|CAF2P_ARATH CRS2-associated factor 2, chloroplastic; TrEMBL-Plants: tr|A0A1J7GVW5|A0A1J7GVW5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0153800 LjG1.1_chr4 25863320 25880865 +
3 domain predictions
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LotjaGi4g1v0310200.1
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT4G29750.1 CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|A7XN92|CFM3_MAIZE CRM-domain containing factor CFM3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0B2QCH4|A0A0B2QCH4_GLYSO Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Found in the gene: LotjaGi4g1v0310200 LjG1.1_chr4 68646907 68656505 +
3 domain predictions
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LotjaGi4g1v0446800.1
n.a. CRS2-associated factor 1, chloroplastic; TAIR: AT2G20020.1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic; TrEMBL-Plants: tr|K7L4R1|K7L4R1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0446800 LjG1.1_chr4 81937391 81941443 +
3 domain predictions
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LotjaGi4g1v0453100.1
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G18390.1 CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|A7XN92|CFM3_MAIZE CRM-domain containing factor CFM3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|K7L4X1|K7L4X1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0453100 LjG1.1_chr4 82508750 82517947 -
3 domain predictions
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LotjaGi4g1v0454900.1
n.a. CRS1 / YhbY (CRM) domain-containing protein; TAIR: AT4G13070.1 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; TrEMBL-Plants: tr|K7L4Y2|K7L4Y2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0454900 LjG1.1_chr4 82654356 82659092 -
3 domain predictions
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LotjaGi4g1v0454900.2
n.a. CRS1 / YhbY (CRM) domain-containing protein; TAIR: AT4G13070.1 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; TrEMBL-Plants: tr|K7L4Y2|K7L4Y2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0454900 LjG1.1_chr4 82654476 82659008 -
3 domain predictions
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LotjaGi5g1v0186400.1
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G23070.1 CRM family member 3A; Swiss-Prot: sp|F4J2U9|CFM3A_ARATH CRM-domain containing factor CFM3A, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151T1A4|A0A151T1A4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0186400 LjG1.1_chr5 47347716 47356274 +
3 domain predictions
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LotjaGi6g1v0076500.1
n.a. CRS1/YhbY (CRM) domain protein; TAIR: AT3G25440.1 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; TrEMBL-Plants: tr|A0A1J7I103|A0A1J7I103_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0076500 LjG1.1_chr6 14512304 14520941 +
3 domain predictions
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