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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0242500 |
| Transcript ID | LotjaGi2g1v0242500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD40 repeat protein; TAIR: AT3G27640.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q5ZJW8|DTL_CHICK Denticleless protein homolog; TrEMBL-Plants: tr|A0A151SJ23|A0A151SJ23_CAJCA Denticleless protein isogeny; Found in the gene: LotjaGi2g1v0242500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:70547286..70552927) extracted from Lotus japonicus Gifu genome v1.2.
CGGTGTTGCAACTCTCTTCTAAGGAGAGCGTGACATACAGTGAAAGGCCTTATCTATTCACTGTTGCAAGATCCGGAGAT CAAAGCAAGACGACTTTCGACGTAGATCACCCACATCTTCAATCCTCTAAAGGTGCGAAATCGGTTTTCATATATTTGGT TTTCTATAATCATTTATGAGATTTCATTTAGGTCTTGCATTCGGTATCATAGACATCATGTCATGTATGACTTTTAGACT CAAATTTGTTATTTGATGGCCCCAAATTCTTTTAGAATCAATTTATTCAGGTAGATCTTACATGATTTGTTTTTCCTGAT ATTTATTCTTATAATGATTACAATTTAGGGTAGCCTTTTTTCTAACTGCTTCAAAGATCTGTGCTCGAATACTTTCTTAG GGTAGGAGTGGGTGGTGGTGGGTGCTCTAGGGTTTTTGATTTTTGGCTATGGGGAATTTCTTCTTTGCCTGACCTTGGGG GTTATTCTTTGTTTGGTTGAGTTGTTTTTTATTTGTTGATTTTGTTTATCCCTTTTCGATGAGGGTTGTATATCTTTGAC AATCTTATTCTCATCAATATAATATTTTGTTTTCGAAAAAAAAAATAACAATTAAAATTTAAGTGAATAGAAATCATAAT TACAAAATTAAGAATCAATATAATATCATGAACGTCATTCGTGATTTATTGGATATGGACTGGGAAGTCAGGTTGTCTCA CACCCTAAGGGAAGAGAATGCCTGTGCAGATTTCCTGGGCGAGGTCGGGGCTCAACAGTCTTTGGCGCTGTCTTTGCTTC GTGACCCTCCAAAAGGAATAAAACCGCTTTTGGAAGCGGATGCTAGGGGAACCTCATTTGTGAGGGAGTGGTCTTTTGTT TCTTGTTTTCTCCTTTTTCTTTTGTTATGAGACCTAGCCCCGCCCAAGCACCAAATAAAATATAACACATAAATTTACCC TTGGAAATATGAACTCACGTAAGTGATTTTAATCAAAGTAGCATTGTGATAAACTACATGTCTTATGGGTTGATCCCTGC CTCCCTGGACTTTTCCCTTCCTCAACTCATACGTGCACAAGCTCTTACCACTTAAGCTATCATTTGAGGACCCTAAATCT ATTTATTCAAAAGCAACATGTAACATTAGCCAAATAAAAAAATATAGGAAAAATAAATTTGGTGAGAGTGTACATGAAAA TTCAATTTCCCGCCAACTCAGATACGCGCCCTTCACTTTCATTTCATGGCGCGCTTACAAATTACATTCCTTCAGTTTCC ATCTCAAATCCCTAATTCCCAATTCTCACTTCATCTTCATCTTCATCTTCTTCTTCTCTGGTTCTCTCAGATCTCAATGG CGATTCCAAAGCACAGGTCCGTCTTCAGCCACATCGCTTCAAGGGAGCTCAACCCCCTCCAAGGTACAACACTTCTTCTC ACTTCTCACTGCACCGTTGTTTCGTTTCCTCACTCACCATCGCGTTTGGGTTTCACCATTGCAGGTCGAAAACGACCTCA CATGGATGCATTCAAATATGGTTACTACCTTTACGGAGGTATAGCCACACAACACTATGCAGAAGACACTATCCCTCTAT CAATTAAGTTCGGCAAGGTACTGTAAACCTAACTAAGCTTTGATTTTGAGCATAACCCTTTTGTTTTTTTCTCCATGAGT GCGGAACCTGATTTTTTAATTTTTTTGGGTTTCATTTTTTTTTTTGCAGACCTCAAAATACGGTCACATCTTCGCTTTAT CTGATGAGGATGGATTCGTCAACTTGTTCGATACTCGCCGCAAATTCAACAGTTGGGACCATGAACTAAACGCAGGTTAG TTTTTGTTTTTGTTTTTTTTTTCAGTTTATTTATAACTTTGTGTAATGAATAGGGGTCAGAGTTTAATGGTTTATTATTT ACTTACATGAAATCTCAGAGAATTTAAGGATTTGTGATTGGGTTTCGCATCGTAATGCTGTTTTTGATGTCTGTTGGATT AAGGTAATACTCAAATCTGCTACCATAGAGAAGTTTTTTATAATACATTTTTGTAACTTCTCCTGATGATTTGTTTATTT CACTGTGTTCTGAAAATGATTTATAATTATTTGCAGGAGGATACACAGATTATTACAGCTTCTGGTGATCAAACTGTAAG TCATTTTGTTATGATAATCAGTTTACTAATGTTAGCTTAAATAATATCTGCATTGACTTGAATGATCATGGTGCATTTTT CCTTGGAGGTTGTCTTATTATGTTCTTGACTTTTCACATGCTCTATTTGAATGATCTTGCTTGTGGACCATATTTCACTG AAATTCAAGTCAGAAGATGCTATTTTCATTTCATTGACTTACATTTGAATAGGTTTTCATCATCCTTGCAAGTAGATACA GAGTTTCCTTCAAGCTAATTTTATTTTGAATGCTCTTATGATGCACATTTACAGATGAAGGTATGGGATGTTCAAGCGAA GAAGTGTCTTGGAGTGTTGGCGGGACACACTGGAAGTGTGAAATCTGTGTCTTCTCATCCAACTAATTCTGGTAATACTT CATTTTATCCTCATATCTACGTTTATACACAAATCAGGATTGTCTACAACTTCGAAGTGATATATCAGCAATTAATATCA TTTTATCTCCAAATTTACAGATATTATTGTCTCTGGTTCAAGAGACGGATCCTTTCGTCTTTGGGACTTAAGGTGCAACT CAATTTCTAAGACTGGAAGTGGGGAAGCGAGCATAAGGTAAATTGCAGTTTTTATTTGTAGAATCCCTCTAATTATAAGT ACTTGATCAGTTGATCATTAGTTTTGATTTGAGGTTCATTGTTTCATTTAAAGTTATTTTTATCATCCTTTTGCTTCTCT AGTTCAACGGCTGTTGTCGAAGGTGCACATCTTTCATCTCAATCAAAACGAGTAACAAGGCGCAAGGTTAGTTGATGATG GATTGTCATTTGTTCACATTTTGCAAACTAAATCTTCCAATTAACAATCCTAACTTGTTAGGCTGCCTCAATGAGTATTA CATCTGTTCTTTATCTCAAGGATCAAGTTTCCATAGCCACTGCTGGGGCGGTGGAGAGGTTAGTTAAATGTATTACTCAT CAAATTGATAATTGAATGTTCTGAAGCTTGTAATCAGTTTAATTGATTTTACTATGCAATTGGTATATTTCAGTGTGCTG AAGTTTTGGGATACTAGAAATTTGAAAAGTATTGTCACACAGACATGTCCTCATCCTCAGTCAACAGAAAAGGTTGGTTG GAACTACACTGTGAAGTGAATATGTTTTAGTTTCTTTTTACAGTCAGGAGGTTACAAATTTAGTGCGTGATGATAAATTG AACCATGCTTCATACGTCCAATAAGAAATGTGCAGGGCTAGGGGTTATGGTCTCAAAATCACCAGTTAAAATTGTAAATG TGATAGAAAATGTCAGCTGCATTCTGCTTTTCATGTCGCTATTATATTTGAACAGTATTGATTTTCAAACTGGTTTTTAT TAGATACTGGAAATTATAAAATGATCATCAGTCTTCGGTTTGCTTGACTGTGTTCTTCATTGTTATTTCAGCAAGTACAT GGTATAACTAGCTTGTCTCAAGATGACAGTGGACTTTTTCTTACAGCCTCTTGCATGGATAACCGGTATCTTCCTTTGAC AACCTATTATGTTCTATTCTTGTGAATCAAACTATTGTTTAGAGAATGTAAATCAAAATGTAAATATACTGTTTTTTCCT CTTTTTTGGCAGAGTTTATCTGTATAATACCCTTCAACTTGAAAAGGGGCATTTTAAATCTTTTTCTGGATGTCAAATAG AGTCTTTTTTTGTAAAGGTGAGTATTGCAACTGTATCCTAAGTTTTTCTGCACTCGGTTTATTTCACAAGTCCTCACTTT TTCCCTGTCTGATGTGTGCCTTTTCAGGCTGCAATTAGTCCTGATGCATCGCACATAGTCTGTGGTTCTACTAATGGAAG ACCCTGTGTTTGGCGGGTACGTTTCTTGCTTTTAATGAACTAGTGGAAGTTTTTCCCTAAGGTTGCTGTTGGCCTATCAT TTAACTGAAATTTCTAAAATCAGGTTAACAAGCCTCAAGACTATAGTATTTTGAAGAGTCATTATGAGGAAGTTACAGCG GTTGACTGGTAAATTGGAAATCCTCAGTGTGGTTCTAGTTCTCTTTAATATGAGTTTTTAAATTTTCTTATTTCACAGGT GCTCCTCTGACATAAACAAGTTTGCAACAGCTTCTGATGATCCTTCAGTAAGCAGAACTGTTATCTCTTCCTTTTTTTCC GATTTATTCCTTTGACTTGAGACTTGAAGTGTGTTCAAAATCACATTCTTGCATTATATTCTCAACATCATTCAGCTAAG TACTCTGCGTATATATGTTTCTGTTGCAAAAATCAACACTTATTTTCAACCTATTGTGAGATATGAATTTATGTTAAAAT GTTTTTATTTATTAAGCCTTGCTAACGGAAATTGAAACACAACTGTTATTGAAACTGCGTCAAATTGTTTCTTTCGGCTA GTAACAGTCTTTCCAATTTTCCATTTTCAGGTTCATGTATGGAGACAATCCAGTAGTATCCGCACAAAAGAGACTCCACT TCCCCTCCGAAGAAGGATAATTAATATGCCTAGTTGCCACTACACACTGGTTTCAGATAATGAAGAAACACGCCGCAAGC AAGATGCCGAGGCTTTTTTATACAGAGAAGAAGAACCTCACCATCAAACTGAGCCAGCCACTCCAATCACACCACCTAAA ATGAACACATCTGAAGGCCACAAGAACCAGCTCTCATCAGGATTGGATCAAACTCTTGACTCTGAGAAAACTCCAGAGTC TGCCTTGAAGAGCCCTTCATCTGTATTGAACCCGCCATCCTCCCTAAAAAGAACTATCCGGGACTACTTCTTAGCATCTT CATGATAGGTTCATTAAACTAACTAATTTTTTTGATAAGTTATTGCACATTGTGATCCTGTGTAAGGGAAGGCAAGAGGC TTGGAATTTCTCCAACTATGTTCTTGGGTAAGGTTCTTTTTCCTGAGGTATCAAAATGCTTAGTTTATTCAGAAGTGTAA TTTTTTGTTTACACAATATTTTATTGTTTCTGCAGGTTTTTTGAAATGTAAAGTGCTTAGAAGTTTGGTTGTAGCATAAT TCATCCGTGAGATTTTTTACTCCTTAGTTGTGATCAAGCTAGGGAGACTAAAAGCCTTAAACATAAACTGGACATATGTT TGTTTCTGCTGTTTTGGTAGAGACAAATGGAATGTTACATATATACTAGATGAGCATGTAAATTCTGACTCATTTTTTTT GCATCAGAATTAGGCCAAAAAGTGATGCCCCACTCTAATATCATCGTTGATGTAATTGGTGAATGGTGATCTATGTGAAG CGTGACTAGGGTATATAAGGTGCTTGGCTTGTGGCTTGTGCCTTGAGCTGAGGGTAATGTCTTCACCAGAAGTGAAAAAC TAAATGCTTAAAGGTGTAATGTACTTTGTTAAAACTCATGAAAGTACTGATTTTTGAACCTAGTTTTGCTTGCTCGGTGA CCATTTCGTGAGTAGAAAATACTTTATATGCGTTGATTGCAT
CDS sequence (LotjaGi2g1v0242500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGATTCCAAAGCACAGGTCCGTCTTCAGCCACATCGCTTCAAGGGAGCTCAACCCCCTCCAAGGTCGAAAACGACC TCACATGGATGCATTCAAATATGGTTACTACCTTTACGGAGGTATAGCCACACAACACTATGCAGAAGACACTATCCCTC TATCAATTAAGTTCGGCAAGACCTCAAAATACGGTCACATCTTCGCTTTATCTGATGAGGATGGATTCGTCAACTTGTTC GATACTCGCCGCAAATTCAACAGTTGGGACCATGAACTAAACGCAGAGAATTTAAGGATTTGTGATTGGGTTTCGCATCG TAATGCTGTTTTTGATGTCTGTTGGATTAAGGAGGATACACAGATTATTACAGCTTCTGGTGATCAAACTATGAAGGTAT GGGATGTTCAAGCGAAGAAGTGTCTTGGAGTGTTGGCGGGACACACTGGAAGTGTGAAATCTGTGTCTTCTCATCCAACT AATTCTGATATTATTGTCTCTGGTTCAAGAGACGGATCCTTTCGTCTTTGGGACTTAAGGTGCAACTCAATTTCTAAGAC TGGAAGTGGGGAAGCGAGCATAAGTTCAACGGCTGTTGTCGAAGGTGCACATCTTTCATCTCAATCAAAACGAGTAACAA GGCGCAAGGCTGCCTCAATGAGTATTACATCTGTTCTTTATCTCAAGGATCAAGTTTCCATAGCCACTGCTGGGGCGGTG GAGAGTGTGCTGAAGTTTTGGGATACTAGAAATTTGAAAAGTATTGTCACACAGACATGTCCTCATCCTCAGTCAACAGA AAAGCAAGTACATGGTATAACTAGCTTGTCTCAAGATGACAGTGGACTTTTTCTTACAGCCTCTTGCATGGATAACCGAG TTTATCTGTATAATACCCTTCAACTTGAAAAGGGGCATTTTAAATCTTTTTCTGGATGTCAAATAGAGTCTTTTTTTGTA AAGGCTGCAATTAGTCCTGATGCATCGCACATAGTCTGTGGTTCTACTAATGGAAGACCCTGTGTTTGGCGGGTTAACAA GCCTCAAGACTATAGTATTTTGAAGAGTCATTATGAGGAAGTTACAGCGGTTGACTGGTGCTCCTCTGACATAAACAAGT TTGCAACAGCTTCTGATGATCCTTCAGTTCATGTATGGAGACAATCCAGTAGTATCCGCACAAAAGAGACTCCACTTCCC CTCCGAAGAAGGATAATTAATATGCCTAGTTGCCACTACACACTGGTTTCAGATAATGAAGAAACACGCCGCAAGCAAGA TGCCGAGGCTTTTTTATACAGAGAAGAAGAACCTCACCATCAAACTGAGCCAGCCACTCCAATCACACCACCTAAAATGA ACACATCTGAAGGCCACAAGAACCAGCTCTCATCAGGATTGGATCAAACTCTTGACTCTGAGAAAACTCCAGAGTCTGCC TTGAAGAGCCCTTCATCTGTATTGAACCCGCCATCCTCCCTAAAAAGAACTATCCGGGACTACTTCTTAGCATCTTCATG A
Protein sequence (LotjaGi2g1v0242500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIPKHRSVFSHIASRELNPLQGRKRPHMDAFKYGYYLYGGIATQHYAEDTIPLSIKFGKTSKYGHIFALSDEDGFVNLF DTRRKFNSWDHELNAENLRICDWVSHRNAVFDVCWIKEDTQIITASGDQTMKVWDVQAKKCLGVLAGHTGSVKSVSSHPT NSDIIVSGSRDGSFRLWDLRCNSISKTGSGEASISSTAVVEGAHLSSQSKRVTRRKAASMSITSVLYLKDQVSIATAGAV ESVLKFWDTRNLKSIVTQTCPHPQSTEKQVHGITSLSQDDSGLFLTASCMDNRVYLYNTLQLEKGHFKSFSGCQIESFFV KAAISPDASHIVCGSTNGRPCVWRVNKPQDYSILKSHYEEVTAVDWCSSDINKFATASDDPSVHVWRQSSSIRTKETPLP LRRRIINMPSCHYTLVSDNEETRRKQDAEAFLYREEEPHHQTEPATPITPPKMNTSEGHKNQLSSGLDQTLDSEKTPESA LKSPSSVLNPPSSLKRTIRDYFLASS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 39 | 502 | 464 | 4.7E-145 | – | |
| Gene3D | 54 | 321 | 268 | 1.1E-35 | ||
| SUPERFAMILY | 62 | 399 | 338 | 6.02E-48 | ||
| SMART | 96 | 135 | 40 | 2.0E-5 | ||
| Pfam | 99 | 135 | 37 | 0.036 | ||
| ProSiteProfiles | 103 | 144 | 42 | 12.447 | ||
| ProSiteProfiles | 103 | 396 | 294 | 27.131 | ||
| ProSitePatterns | 122 | 136 | 15 | - | ||
| PRINTS | 122 | 136 | 15 | 6.9E-6 | ||
| SMART | 138 | 178 | 41 | 2.1E-9 | ||
| Pfam | 140 | 178 | 39 | 3.8E-6 | ||
| ProSiteProfiles | 145 | 187 | 43 | 14.953 | ||
| PRINTS | 165 | 179 | 15 | 6.9E-6 | ||
| SMART | 208 | 248 | 41 | 50.0 | ||
| SMART | 253 | 298 | 46 | 16.0 | ||
| SMART | 311 | 344 | 34 | 77.0 | ||
| Gene3D | 322 | 407 | 86 | 7.2E-12 | ||
| SMART | 347 | 387 | 41 | 5.2E-4 | ||
| Pfam | 353 | 386 | 34 | 0.014 | ||
| ProSiteProfiles | 354 | 396 | 43 | 9.84 | ||
| PRINTS | 374 | 388 | 15 | 6.9E-6 | ||
| MobiDBLite | 434 | 506 | 73 | - | – | |
| MobiDBLite | 447 | 493 | 47 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0242500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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