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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0243800 |
| Transcript ID | LotjaGi2g1v0243800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB-related transcription factor; TAIR: AT4G18770.1 myb domain protein 98; Swiss-Prot: sp|Q9S7L2|MYB98_ARATH Transcription factor MYB98; TrEMBL-Plants: tr|A0A0L9VU20|A0A0L9VU20_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0243800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:70740487..70743593) extracted from Lotus japonicus Gifu genome v1.2.
CATTCTACTCCTAAAAAACAACAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACAGTTGT GCTTTCTGCATGGCATTCGATCCTACCTTCCAAGACCAACTACCAGTCCTTTGCAGAGACCTCCCCTACTTAAATCCAGA GATTCCGACCATGTTTTCATCACCAACCTCCGTTCTCATCCCACCACCACACAACAACCCCTTGTTGAACCACGCCAACA CTTTCCACCATATTCAAGACAATACCCACAACCCTGACCTTTTGATGGAGGGTCTTTCGTTTGTTTCCAACCCTATCAAT GTTCCCTCAATTCCCTACTTGGGTGAGTCTTCCCAAGCAGGGTCTCAAAGTGGTTTTGTCAACCCTAACCCTATGATACC TTCACCAAACAACAAAATGGAATCCTTGTACCACCACCAAGGTGGCACATTAATTTGGGATTTTAAACAAAAAACTACAA TTCAATCATCTGCAGTTTCTGCTTCCTCCATTGCTCAAATGGGTCCCTTAATTGTGTCACAACCACCACCACCAGTAGAT TCTAGTGAAATTGAATTGGTGAAGAGGGCTTTGTTTGAAGGGGATCTTTCATACCTCACTGAAATTTTTGGCACTAGTCA TGATGGTGAGCAAAGGAAAAATGTGCAAGCTGAAGGGGATATCAACACTGCTAACATAACCAAAGGGCATTGGTCAAAAC AAGAGGACATGTATGAATAATTTCATATGTTGTCTTCTGTCTCTTTCTCTGCTTTGTCCTTTTTTTTTTCATTTCAAAGA AAATTTGACCTTTGATACCTTTCATATATTTCAGGGTTTTTTTTCAATGTTGAAAAGTTATGAGTATTTATTTGAATATT TATGGTATTATATGTAGGGCGCTTGTGACATTGGTGAAGCAGTACGGACAGAGTAAATGGAGTAAAGTCGCAAAATTAAT GAAGAAAAGGCTTGGAAGGCAGTGCAGAGAAAGATGGCACAACCATCTCAGGCCAGAGATTAAGGTTGCTTCCATTTCCT TTGTCAATTTTTGCATCCAGGCATATATATTTCTTTTGGGTTTAATAAATGCACTCACATTATATATGCATTTTAAAAAA CTCACATGCTTGATCGTTGCCACTTGGATCTAATATTCAAGATTTAATGCTTCTATCTTTTATAATAAACACTTCTCAAC CTCTTCTGTTCCATATATATAAAGGCATATTAAGGGAGAGGGATACTGATTGTGAGATATGTTAGCATCAAATTGTGATC GTACAACATGAATAGTTGAGATTAAAGGTTATTTAATTGTCACTTAAAAAAAAAAGGTTATTTAATGGTCATTTTAAGAA TCTCAAATCATCTAAACATATTTTTTATTTTCAAGTCATATATCTTTCAATTTTGTAAAACATCTCGTTCAAACAATTGT TTCCTTTTCTTCTTTTGAAAATGGGGTTAAAAATCATTTCTAAAAATTAGTTTTGAATTCAGAAAAGATCTTGTTCAAAT TGTTTTTTTCTTCTTCTTTTAAAAAATAGGTTTTAAAAATTATTTCTAAAAAATATTTTTTGAATTCAAAAACTGATAAA ACACAAATTATTTATGAATTTCTGTTGTTGATAAATGGTAGTCCATTTCTTTTTGACTTTTCTTCTGAACTAAAACGCAA ATTAAATTGCCAATTTAATTCGTTCTTATCCACTTCCAAAAAATATTAAATGATATTAATTCGTTCTTTAATTTAATAAA TATTACTCCATTCCTATATTAACTGCCACTACTTTTATCCTTTTTTGTTCATATTTATTTGTCAAATTTCAAGAGATTAT TAATTATACGTTATTAAGTGTTCCCTTAATTTAATTGCGATAGGAAAACTGAAAATCTAGAATAAATAAGAGAGATAAAT GATATATTAAGAAGTTAGATAATATTTTAATAAAACAAAAATATTAAATAAATTTTTTGAAGTACCAAGAATCTCTAGTT TTTCCATCCTTATTATGATTTTTCCTCCTTTTCGTCTTAAAAAAAAGTACCAAGATTGTCATTTGCTATCATGATGCAAT CATGTACTATTTGTCTGTCAGGTGCAAATGCAAACTGATTTTGTATGATTAGATCCCCATATTCATTTTATTCTGATTTT GTACTCTATTATATAAAGTCAACACTCCATTGCATTCTTCTTAAAATATTATATTCAAATGTAGTTTAGGTCTAGTAGCA AAACATGACGGTGAAATTTGATTCATTTAAGCTCTCTATATAATTCCCATATCCACATATTTTTTGTCTTGTATTAATGT AGAAGCGTCCATGGACAATGATAGAAGACCTTATACTGATCAAATCCCACCAAGAACTCGGAAACAAATGGGAAGAAATT GCAAAGAGATTGCCTGGTAGGTCAGGGAACACCATCATGAACCATTGGAACGCCACCAAGAAATGCCGAAATATTTTCAA GAAGCCTGAAACTTATGACGGATCTATGCTTCAAGCTTACATCAAAAGGGTCACTGCTTCTAAAGAATCTACAAGAGAAA CGAAGAAGAAACCCATAAACAAGATGAAGATGAAGGAGGCCATGCATACAAAGTTGAATGAAGGTGTGGTCAATGGGAAT GTCGATGGAATAGCAAGTGGGTCGGTGATGGATGGTGGAATAGTCAATGGTTCCACCATATATGGTTACATTCTTGAAGG CTTGATCTAGGAGATGAAGGAGATGGATTTGCATACAAAGATGATAACTAGAAATTATTAAAAATTAATCAAGGGGCATG CATAGTGAAGCCTCTCTGGAATCTATCTCATAAATTTTATGAAGGTTTATCATGTTGATCTTTCTGTGTTTGTTTTGTGT CGTATGATTTCAGTCTGAGGGAGTCTGATGGGTTTATAGATATTGTGCTTTATTTAGTTGAGTCTGATGGGTTTATAGAT ATTGTGCTTTATTTAGTTTATCTTTTTATTGTTTGAAGTTTTATTAATCTAGCTTTAGTTCATATACTATTATTAAGTAT CAAGCTTCTAGTATATTTCCCCTAGTAAGATGATGTCACTTGTTGGTCATCTAATTAAAGAATAAGC
CDS sequence (LotjaGi2g1v0243800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATTCGATCCTACCTTCCAAGACCAACTACCAGTCCTTTGCAGAGACCTCCCCTACTTAAATCCAGAGATTCCGAC CATGTTTTCATCACCAACCTCCGTTCTCATCCCACCACCACACAACAACCCCTTGTTGAACCACGCCAACACTTTCCACC ATATTCAAGACAATACCCACAACCCTGACCTTTTGATGGAGGGTCTTTCGTTTGTTTCCAACCCTATCAATGTTCCCTCA ATTCCCTACTTGGGTGAGTCTTCCCAAGCAGGGTCTCAAAGTGGTTTTGTCAACCCTAACCCTATGATACCTTCACCAAA CAACAAAATGGAATCCTTGTACCACCACCAAGGTGGCACATTAATTTGGGATTTTAAACAAAAAACTACAATTCAATCAT CTGCAGTTTCTGCTTCCTCCATTGCTCAAATGGGTCCCTTAATTGTGTCACAACCACCACCACCAGTAGATTCTAGTGAA ATTGAATTGGTGAAGAGGGCTTTGTTTGAAGGGGATCTTTCATACCTCACTGAAATTTTTGGCACTAGTCATGATGGTGA GCAAAGGAAAAATGTGCAAGCTGAAGGGGATATCAACACTGCTAACATAACCAAAGGGCATTGGTCAAAACAAGAGGACA TGGCGCTTGTGACATTGGTGAAGCAGTACGGACAGAGTAAATGGAGTAAAGTCGCAAAATTAATGAAGAAAAGGCTTGGA AGGCAGTGCAGAGAAAGATGGCACAACCATCTCAGGCCAGAGATTAAGAAGCGTCCATGGACAATGATAGAAGACCTTAT ACTGATCAAATCCCACCAAGAACTCGGAAACAAATGGGAAGAAATTGCAAAGAGATTGCCTGGTAGGTCAGGGAACACCA TCATGAACCATTGGAACGCCACCAAGAAATGCCGAAATATTTTCAAGAAGCCTGAAACTTATGACGGATCTATGCTTCAA GCTTACATCAAAAGGGTCACTGCTTCTAAAGAATCTACAAGAGAAACGAAGAAGAAACCCATAAACAAGATGAAGATGAA GGAGGCCATGCATACAAAGTTGAATGAAGGTGTGGTCAATGGGAATGTCGATGGAATAGCAAGTGGGTCGGTGATGGATG GTGGAATAGTCAATGGTTCCACCATATATGGTTACATTCTTGAAGGCTTGATCTAG
Protein sequence (LotjaGi2g1v0243800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFDPTFQDQLPVLCRDLPYLNPEIPTMFSSPTSVLIPPPHNNPLLNHANTFHHIQDNTHNPDLLMEGLSFVSNPINVPS IPYLGESSQAGSQSGFVNPNPMIPSPNNKMESLYHHQGGTLIWDFKQKTTIQSSAVSASSIAQMGPLIVSQPPPPVDSSE IELVKRALFEGDLSYLTEIFGTSHDGEQRKNVQAEGDINTANITKGHWSKQEDMALVTLVKQYGQSKWSKVAKLMKKRLG RQCRERWHNHLRPEIKKRPWTMIEDLILIKSHQELGNKWEEIAKRLPGRSGNTIMNHWNATKKCRNIFKKPETYDGSMLQ AYIKRVTASKESTRETKKKPINKMKMKEAMHTKLNEGVVNGNVDGIASGSVMDGGIVNGSTIYGYILEGLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 120 | 352 | 233 | 8.2E-65 | – | |
| PANTHER | 120 | 352 | 233 | 8.2E-65 | ||
| ProSiteProfiles | 200 | 255 | 56 | 24.614 | ||
| Gene3D | 202 | 257 | 56 | 4.8E-22 | – | |
| SUPERFAMILY | 202 | 298 | 97 | 1.46E-28 | ||
| SMART | 204 | 253 | 50 | 8.5E-15 | ||
| CDD | 208 | 251 | 44 | 5.04308E-14 | ||
| Pfam | 208 | 262 | 55 | 1.8E-15 | – | |
| SMART | 256 | 304 | 49 | 1.4E-12 | ||
| ProSiteProfiles | 256 | 307 | 52 | 13.093 | ||
| Gene3D | 258 | 317 | 60 | 3.3E-15 | – | |
| CDD | 259 | 302 | 44 | 1.69833E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0243800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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