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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0244200 |
| Transcript ID | LotjaGi2g1v0244200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polygalacturonase; TAIR: AT5G14650.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q949Z1|PGLR4_ARATH Polygalacturonase At1g48100; TrEMBL-Plants: tr|Q9SWS3|Q9SWS3_SOYBN Polygalacturonase PG1; Found in the gene: LotjaGi2g1v0244200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:70813090..70815911) extracted from Lotus japonicus Gifu genome v1.2.
CCCTTTCCCTGTAAACTGTCATGAAATTTGATACTGTACGGCTCATGGTTGCACAGTGTTTCCAAGTACTATAAAATTTT TTCTTCTATAAATAGAGCTTCAATTTCATGCTCTGTTTAACTACACAAAACCTCTTTACTACTTCAAATCCAAACCCTCT CTTAAAATATGAAGGGTATTAAACTGATCATTGCCATTGTGTTTTCTTTGTGGTCTTCCAGTACCTTTGAAAGCTGCATA GCCGCCACTAGAGGTAATTACCACTGGAGGAAACTCAAAGCAGCCTCTGCTACTAATTTTAATGTGTTAGACTATGGTGC TAAAGGTGATGGACATGCAGATGACACAAAGGTGAATTTCAGATTCACTCCTCTTAAGTATACATATATGTATCTATGTG CATGTGTACATTAATTTATCATGTCACACATTTTTAATCAATGTATTAAATCCTCCAAATTAACTATTCTTACATTGAAA AACAGGCATTTCAAGGTGCATGGGCAGCTGCTTGCAAAACAGAGGGATCAACAATGGTTGTTCCATCTGGTTATGTCTTC CTGGTGAAAATAATTTCTTTCTCAGGCCCAAATTGTGTGCCAAACATTGTTTTTCAGGTAAATGAGTTAGTCTATTGACT CTATTCACTCAAAATTTCTATGCTATATTTGACCCTGCAAACATTACAAGCACTAAGCTTATTTAGTCCAAGGACAATAA AATGTTCAAACAAATTTTAACACATGATCTTTATAAAAATACACATTGCAGTTGGATGGCAAAATCATTGCACCTACAAG CCCTTCAGCTTGGGGATCAGGTACCTTGCAATGGCTTGAATTCACAAAGCTTAGTAAGATTGCAATCAAAGGTAAAGGAG TCATTGATGGTCAAGGCTCTGTCTGGTGGAGTGGCAATGGAAAACTGCCAGGAACCAAACCAACTGTGAGAATCTTTACA TTGAACTTTCCCCAGAAATTATAAAAAAATTCTTAAATTTGTCTACTATGGACCATGAAAAACTTCATTCATAAATTAAA ATGGTTTCTTTGCAAATTAATTTTACAACATAGACCATACATTTTATAACAAGATTTTATTATGTTTCATTTCATGCTGC AGGCACTCAGGTTCTATGGAAGTAATGGTGTAACAGTAACAGGTATAACGATTCAAAACAGTCAGCAGACCCATCTCAAG TTTGATTCATGCACAAACGTTCAGGTGTTTGATATCAAGACTTCATCACCTGGTGATAGCCCCAACACAGATGGAATCCA CCTACAAAACTCACAGGAAGTGGTCATCTATAGCAGCACACTTGCTTGTGGTAAGTGTAATTCTCAATAGTAAAATGATG AAAAGGGATGGAATAGAGTAAAATGAAAGAGAAAAAACAAAAAAGCTAACCACAAAAGTGTGAACTCTTAAACATATAGT AACTTCTTCATGAGAGTACTGAATGTTTTCTTGCTACATATTATGCAGGGGATGACTGTATTTCCATACAAACTGGGTGC TCCAATGTATTGGTACACAACATCAATTGTGGACCAGGTCATGGAATTGGCATTGGAAGTCTTGGAAGGGAGAACACCAA AGCCTGTGTTAGAAATGTCACAGTCCGGGATATTACTATCCAGAATACCTTAACCGGTGTGAGAATCAAAACATGGCAGG TATAGTTAACTGATCGAAATCCTGTAAATCGTGTATGTCCCAGCAATGAAATTGTGTCATGTCGTCTATTAAAAATCACT TATGGAAAAGGTTATAACTGTCATATCTAAGTGATAACATGACCCAATTTTATTAGTGAGGCAGAGAAGGGAACACCTAA CAGAGACAAAAGAATGAAATATCCTAATCCATCATTAAATTAACGTAACAATACTTTTTGTTTAAACAGTTTAATTAAGC GTTTATGATAACCCATCCTTACACATAAACACTTATTCATATGCATAAATTGATTGAAAAACTTAACTATAAAATTAGTT ACAAAGTAGTTAATAGTTAGATGTAAGCGCTTATTATAAGCTATTTAGAGCCATTTATCAAAATAAGTCCAAGCAAGTGC TTACTTGTTAAAATAAATTCAAATAAGCTCTTGGAATATCTCCAGGTAAATTAAAATAAAAAAAAGTTAACTAGAAGTTG CTTTTGTATTATACAGGGAGGCTCTGGCTCAGTCCAAAATGTTTTGTTCTCCAACATTCAAGTTACTGATGTTAAAACTC CAATAATGATTGACCAATACTATTGTGACAAAAGCAAGTGCCGGAATCAAACATCAGCGGTGGCAGTTTCAGGCATACAC TATGTGAATGTAAAAGGAACATACACTTGGGAGCCTGTTTATTTTGCATGCAGTGATAGTTTACCTTGTAGTGGTATAAC CATGGACACCATAGAGCTAAAAGCAAGTCAAGAATCTAAGAACTCCAATGTTCCTTTTTGTTGGGCAGCATATGGGGAGA TAAAGACTAAAACAGTGCCACCTGTTGATAATTGTTTGGAGAGAGGCAACCCACGAAGCACTGGAATCATTTCTAAAATA GATTCTTGCTGAATGCTGAACCTATTGCTAGCATTATTAGGGATATATAGCTACTCCATACATTGTAATCATCACAATAT TTATAAATTTGTATTAGATATAGATTATACGTAGAAAGTTGTATTAGTATCTAAATTAGTTCAAGTCCATATAATGTTGT ATGGTATTGTTGTGCTATGTGATTGAGTGGTGTGATTCAAATTTGATTGTCATCATTGTAAAAAGAAAACTAGAAAGAAT AAAATTTTCACTTTTCTCAAAA
CDS sequence (LotjaGi2g1v0244200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGGTATTAAACTGATCATTGCCATTGTGTTTTCTTTGTGGTCTTCCAGTACCTTTGAAAGCTGCATAGCCGCCAC TAGAGGTAATTACCACTGGAGGAAACTCAAAGCAGCCTCTGCTACTAATTTTAATGTGTTAGACTATGGTGCTAAAGGTG ATGGACATGCAGATGACACAAAGGCATTTCAAGGTGCATGGGCAGCTGCTTGCAAAACAGAGGGATCAACAATGGTTGTT CCATCTGGTTATGTCTTCCTGGTGAAAATAATTTCTTTCTCAGGCCCAAATTGTGTGCCAAACATTGTTTTTCAGTTGGA TGGCAAAATCATTGCACCTACAAGCCCTTCAGCTTGGGGATCAGGTACCTTGCAATGGCTTGAATTCACAAAGCTTAGTA AGATTGCAATCAAAGGTAAAGGAGTCATTGATGGTCAAGGCTCTGTCTGGTGGAGTGGCAATGGAAAACTGCCAGGAACC AAACCAACTGCACTCAGGTTCTATGGAAGTAATGGTGTAACAGTAACAGGTATAACGATTCAAAACAGTCAGCAGACCCA TCTCAAGTTTGATTCATGCACAAACGTTCAGGTGTTTGATATCAAGACTTCATCACCTGGTGATAGCCCCAACACAGATG GAATCCACCTACAAAACTCACAGGAAGTGGTCATCTATAGCAGCACACTTGCTTGTGGGGATGACTGTATTTCCATACAA ACTGGGTGCTCCAATGTATTGGTACACAACATCAATTGTGGACCAGGTCATGGAATTGGCATTGGAAGTCTTGGAAGGGA GAACACCAAAGCCTGTGTTAGAAATGTCACAGTCCGGGATATTACTATCCAGAATACCTTAACCGGTGTGAGAATCAAAA CATGGCAGGGAGGCTCTGGCTCAGTCCAAAATGTTTTGTTCTCCAACATTCAAGTTACTGATGTTAAAACTCCAATAATG ATTGACCAATACTATTGTGACAAAAGCAAGTGCCGGAATCAAACATCAGCGGTGGCAGTTTCAGGCATACACTATGTGAA TGTAAAAGGAACATACACTTGGGAGCCTGTTTATTTTGCATGCAGTGATAGTTTACCTTGTAGTGGTATAACCATGGACA CCATAGAGCTAAAAGCAAGTCAAGAATCTAAGAACTCCAATGTTCCTTTTTGTTGGGCAGCATATGGGGAGATAAAGACT AAAACAGTGCCACCTGTTGATAATTGTTTGGAGAGAGGCAACCCACGAAGCACTGGAATCATTTCTAAAATAGATTCTTG CTGA
Protein sequence (LotjaGi2g1v0244200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGIKLIIAIVFSLWSSSTFESCIAATRGNYHWRKLKAASATNFNVLDYGAKGDGHADDTKAFQGAWAAACKTEGSTMVV PSGYVFLVKIISFSGPNCVPNIVFQLDGKIIAPTSPSAWGSGTLQWLEFTKLSKIAIKGKGVIDGQGSVWWSGNGKLPGT KPTALRFYGSNGVTVTGITIQNSQQTHLKFDSCTNVQVFDIKTSSPGDSPNTDGIHLQNSQEVVIYSSTLACGDDCISIQ TGCSNVLVHNINCGPGHGIGIGSLGRENTKACVRNVTVRDITIQNTLTGVRIKTWQGGSGSVQNVLFSNIQVTDVKTPIM IDQYYCDKSKCRNQTSAVAVSGIHYVNVKGTYTWEPVYFACSDSLPCSGITMDTIELKASQESKNSNVPFCWAAYGEIKT KTVPPVDNCLERGNPRSTGIISKIDSC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 21 | 21 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 25 | 8 | - | – | |
| PANTHER | 20 | 416 | 397 | 1.1E-219 | – | |
| PANTHER | 20 | 416 | 397 | 1.1E-219 | – | |
| Phobius | 26 | 427 | 402 | - | – | |
| Gene3D | 30 | 416 | 387 | 7.8E-127 | ||
| SUPERFAMILY | 40 | 407 | 368 | 4.79E-125 | ||
| Pfam | 75 | 388 | 314 | 1.4E-85 | ||
| SMART | 170 | 219 | 50 | 16.0 | ||
| SMART | 220 | 241 | 22 | 1800.0 | ||
| SMART | 243 | 263 | 21 | 9000.0 | ||
| ProSitePatterns | 250 | 263 | 14 | - | ||
| SMART | 273 | 294 | 22 | 0.96 | ||
| SMART | 302 | 323 | 22 | 1800.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi2g1v0244200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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