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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0245200 |
| Transcript ID | LotjaGi2g1v0245200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT4G11690.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690; TrEMBL-Plants: tr|A0A072U8H3|A0A072U8H3_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi2g1v0245200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:70992097..70996251) extracted from Lotus japonicus Gifu genome v1.2.
GTCAAACTCGCGAGTTCACATCCGAATTCACAAGTAGGTTTTTTTAGGAGATAAAAACCTTCATCTTAATGAAAACGTTG TCGTTTGAACAATGGGGCTTTAGGTTTCAGCCAATATTGTTCTCCCTGCACAAGCACAAATCGCGACTCAGAGAAAGAAA AGCTTCCCCTGCATCCTTCTCCGCCGCCTTCAACGTTCGGCCGGCGAACCGTCCCCTCTCTCCGGCGACCTGGTCTGAAA CTTGCTTCAACTTCGTTATGGATGCAGTTCACCTGCTTCATCATCCAAGCTTATTCACACAGTGGAGATTGCAGTGATAG TTTTGTAACAGAGAAACATGTCTCATTCACATGAATCTCTGATTCTGATTCAAAAGATGGTGAAACTGCCTCCACCAAAA GCATTTTCACTCTTCAATTCCTCAACCTCTCATGGCATTCACCAAACCCCCCAATCCATATCATTCATCTTGAACCATCT CATTTCCTCTGGCATGGTTTCACAAGCTCAATCTGTACTCATGCGTGTAATCTCTGGTCAAATCTCATCACCAATGTTCT CCCAATCCTCACTTATTCACCAACTAACACAACCCCATTTGGCCTCTAGTTCAATCAAAACTCTTCTTCATGAAGCAATT GTTAATGCCTATGTTCATTGTCAATCACCTGATCAAGCTCTCTATTTCCTACACCAGATGGTTCATGAGGGTCATTCTCC TAGATCAAACACATTTAATGGTGTTTTGAGCTTACTTGTTGGGTCGAATTGTTTCGATAAAGCGTGGGAGGTTTTCGATG AGTTGAAGAGTAAGGTTGTTCTGGATGTTTATAGTTTTGGGATTATGATTAAGGGTTGTTGTGAATCTGGTGACTTGATG AAAGGTTTTCAGCTTTTGGCTATGATGGAAGAGGTGGGTTTGTCTCCAAATGTTGTCATATATACTACGCTGATTGATGG TTGTTGCAAGAATGGGGATGTTCATTTGGCTAAGAAATTGTTTTGCAGGATGGAGGGATTGGGATTAGTTGCCAATCAAC ATACATATTGTGTATTGATGAATGGGTTTTTCAGGCAAGACCTTCAGAAGGATGGATTTCAAATGTATGAAAATATGACG CGGAGTGGAATTGTGCCTAATATATATGCTTACAATTGTGTGATTAGTGAATATTGTAAAGGTGGGAATGTAGATAAAGC TTTTAAGGCGTTTGATGAAATGCGTGAGAAAGGTGTAACATACAATGTTGTAACATACAACTTTTTGATTGGTGGATTGT GTCAAGTGAAGAAGCTAGGGGAAGCAGTGAAGTTGCTTGCTCAAGTCAACCGTGCTGGCCTAAGGCCTAATATAATTACA TACAACACACTGATGAGTGGGTTTTGTGATGTTGGGAAGATGGACAACGCTGTTAGATTATTCAATCAATTGAAGTCAAA TGGACTTTCTCCAACAATTGTGACATATAATACTTTGATTGCAGGGTATTCTAAGATTGGAGATTTAGCTGGAGCTCTTA ACTTAGTCAAGGAAATGCAGGAGAGACAACTTTCTCCTTCCAAAGTGACATATACAATTCTAATCGATGCGTTTGTAAGA CTAAATTGTATGGAGAATGCCTTTGCACTCCATTCTTTAATGGAGAAGTCTGGTTTGGTTTCAGATGTTTGCACATACAA TGTCCTAATACATGGGTTATGTATGAATGGTAACATGAAAGAAGCATCAAAACTCTTCAAATCATTGGGTGAGTTGCCGC ACTTGGAACCTAATGGGGTCATATATAATACAATGATCCATGGTTATTGCAAAGAAGGGAACTCTTATAGGGCTCTTAGG CTACTTGAAGAAATGGTTGGGAATGGAATGGTTCCAAATGTGGCCAGTTTTTGTTCAACCATAGGGCTTCTGTGCAGGGA TGGGAAGTGGAAGGAAGCTGAGCTTCTCTTACAACAGATGATAAATTCAGGACTGAAGGCATCAGCTTCATTGTACAATA TGGTTTATAAAGTCAAAAGCGAAGTTTCTAATGTTGAACCAGAAGGTAATACAACGTCCTATTCTTAATTTTATTTTTTC TTAGATTTTACTGATTAGTAACATGATGATTTTTTCATTTGATGTTAATATATTTCAATTTGGCGCTGAACTTTTAAATT ATCCTTTTGCAGGTAAGGCAGTTGGAGCTTGACTCTAATCGTAGGAGAGGACTATTTATAATTATAAAATGTATGAACAT CATATATGAAGGTCTTTTATTGCAACATGCAGTGGATGGTTACCCTAAACCAGCAGCATGCCTAAGTACTTGAACTTTTT GAAAAGCAAAGTTCTTGCTGAACTAACTAAGCCAAAATATGTTACTCCTGCTACTTTACAAATGATGAGGATAATGTAGA AGAACATGTTGATAGTGATGCTGGAAACCATATCCCAAAATCCATGGAGTTTTTTTCCTCAGAATGCACGACATACTTTG ATTGGCTGACTGTAGGACTTATGCACAGTTTCCGCACAAGTAGGCAGCCCAGAAATATCACTAGACTTCTTAGCTGTTCT GATGAGGACTTGAGGCAGTTTAAGGGCCATGATCTGGCTCCCACATTATGTTCCTTCTATGAGTCAACATCCATTAACTG GAGATTGGTAATTGTGTTTTTGTCAGTTCAGTTTGCATTTATGTTTTTTTTGTTATGTTTGCAATTATGTTATGTGAACA CTTTTGAGTTAGTTCTTGTCATTTCTGCATTGACATTTACTGTATGATTGAAACAAATTGGCCAAGATTATCAATCATGG AACGAGCAAAGGACTGTCTTCGTAGCATCATTGTTTTGAAGATAGTTACAGCTAATTTTGATAAAAGAAATCTTAACAAA TTCATTCCTATGATCATGTCTAAATTGTATCTGAAACTATATTCATCATGGTCAAGCTAATTAATTTATCCACCTCATGG TTGGCTTTTTTCTTTTCTTTTTGATTTTTTTTAATGCTCCTTTAACCTCTGGTTTTTAACTTGGAAATCAAGTAATTTGT TTTTATCATCATTCTTTGTATGCTTTCTTAACTTGTTAACACTTATTTATTAAATGCTGTAAAACTGCTGATCCTTGCCT CATGTTTGCTATTCCTACTTAAATGACATATAAGAAATCTTGTGCCTCCACTTGTAGTATGCAGTTACTGAGAACCTGCT TGTTCAATGCTTCCATGTGGCTGAATGATTCATACTATAGGCTAAAAAACTTGATAGTATGTCCGTTTTATTTTAGGTAT CCTTCAAGTAATAAACCAGCTGCAGTCCTTCACTGGCTTAGTTGCAAAACATTGATGCTGAATGCATAGAGATTCTTGAT GCTGATATGATCTTGAGAGTCCCAATCACACCATGGGAATTCAAATGTGCTCGAAGCGATCCTGTTTCAACTCCTTATGA GTAAGCCTGGTGAATTTGATGTAAATGCCTCAGTCTGCATGGCTGCATACATACAGTTTTCTGTTGATATCTGCTTTATC TTTCATATTCAGTGTGATAGCTCATTTCTATTTCTTTTAATCTTTACATGCTAGCTGCCTTATTGGCTGTGACAATGAGC TCGCAAGGAAGATGAATCAACTGCAAAAAGACTTCCGAATTTGGCAAGAAATTCAAAACAATGATATTGAGAATGTCAAA TGGCTATAAACCTTGGCTAACTATTGGGAACACCTACCTCTCACTAATCTAGCCTCTGTGGTTGCAGCTTTGAGAGTTAA TTGTTTGAATTATGATAATCGTAGAAGTATCATATAATTCAAATTGTGAGGTTTGAAGAAGCTGTAACTGGCACTTCAGA TTTACTTAGTTTTTGTGCTGAGAAGATCACCTAAAGAGAAATAGCTTTTAGTTGAGTTGATATTTAACATAATATTAAAG TATCTTCAGTCTTCACCTTGTATTAGGAATTCAGCACAAGGGCTCGTATGATTGCTGTATTGAATGGCTGAGAAAATTCT AAATTTTGCACATTTAGAAATTACTCGGTAGGGGCAATTCCTTTCTTCTCTTTTTTTTTTTTTTTCAAAAACTTTATTAT TCTTTTCTAAAATATACATTTCACCCCACCCTTTTAGTAGTTAAATACCAAGTAATCTATAACTTTGGTTTGAGT
CDS sequence (LotjaGi2g1v0245200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCATTCACATGAATCTCTGATTCTGATTCAAAAGATGGTGAAACTGCCTCCACCAAAAGCATTTTCACTCTTCAA TTCCTCAACCTCTCATGGCATTCACCAAACCCCCCAATCCATATCATTCATCTTGAACCATCTCATTTCCTCTGGCATGG TTTCACAAGCTCAATCTGTACTCATGCGTGTAATCTCTGGTCAAATCTCATCACCAATGTTCTCCCAATCCTCACTTATT CACCAACTAACACAACCCCATTTGGCCTCTAGTTCAATCAAAACTCTTCTTCATGAAGCAATTGTTAATGCCTATGTTCA TTGTCAATCACCTGATCAAGCTCTCTATTTCCTACACCAGATGGTTCATGAGGGTCATTCTCCTAGATCAAACACATTTA ATGGTGTTTTGAGCTTACTTGTTGGGTCGAATTGTTTCGATAAAGCGTGGGAGGTTTTCGATGAGTTGAAGAGTAAGGTT GTTCTGGATGTTTATAGTTTTGGGATTATGATTAAGGGTTGTTGTGAATCTGGTGACTTGATGAAAGGTTTTCAGCTTTT GGCTATGATGGAAGAGGTGGGTTTGTCTCCAAATGTTGTCATATATACTACGCTGATTGATGGTTGTTGCAAGAATGGGG ATGTTCATTTGGCTAAGAAATTGTTTTGCAGGATGGAGGGATTGGGATTAGTTGCCAATCAACATACATATTGTGTATTG ATGAATGGGTTTTTCAGGCAAGACCTTCAGAAGGATGGATTTCAAATGTATGAAAATATGACGCGGAGTGGAATTGTGCC TAATATATATGCTTACAATTGTGTGATTAGTGAATATTGTAAAGGTGGGAATGTAGATAAAGCTTTTAAGGCGTTTGATG AAATGCGTGAGAAAGGTGTAACATACAATGTTGTAACATACAACTTTTTGATTGGTGGATTGTGTCAAGTGAAGAAGCTA GGGGAAGCAGTGAAGTTGCTTGCTCAAGTCAACCGTGCTGGCCTAAGGCCTAATATAATTACATACAACACACTGATGAG TGGGTTTTGTGATGTTGGGAAGATGGACAACGCTGTTAGATTATTCAATCAATTGAAGTCAAATGGACTTTCTCCAACAA TTGTGACATATAATACTTTGATTGCAGGGTATTCTAAGATTGGAGATTTAGCTGGAGCTCTTAACTTAGTCAAGGAAATG CAGGAGAGACAACTTTCTCCTTCCAAAGTGACATATACAATTCTAATCGATGCGTTTGTAAGACTAAATTGTATGGAGAA TGCCTTTGCACTCCATTCTTTAATGGAGAAGTCTGGTTTGGTTTCAGATGTTTGCACATACAATGTCCTAATACATGGGT TATGTATGAATGGTAACATGAAAGAAGCATCAAAACTCTTCAAATCATTGGGTGAGTTGCCGCACTTGGAACCTAATGGG GTCATATATAATACAATGATCCATGGTTATTGCAAAGAAGGGAACTCTTATAGGGCTCTTAGGCTACTTGAAGAAATGGT TGGGAATGGAATGGTTCCAAATGTGGCCAGTTTTTGTTCAACCATAGGGCTTCTGTGCAGGGATGGGAAGTGGAAGGAAG CTGAGCTTCTCTTACAACAGATGATAAATTCAGGACTGAAGGCATCAGCTTCATTGTACAATATGGTTTATAAAGTCAAA AGCGAAGTTTCTAATGTTGAACCAGAAGGTAAGGCAGTTGGAGCTTGA
Protein sequence (LotjaGi2g1v0245200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSHSHESLILIQKMVKLPPPKAFSLFNSSTSHGIHQTPQSISFILNHLISSGMVSQAQSVLMRVISGQISSPMFSQSSLI HQLTQPHLASSSIKTLLHEAIVNAYVHCQSPDQALYFLHQMVHEGHSPRSNTFNGVLSLLVGSNCFDKAWEVFDELKSKV VLDVYSFGIMIKGCCESGDLMKGFQLLAMMEEVGLSPNVVIYTTLIDGCCKNGDVHLAKKLFCRMEGLGLVANQHTYCVL MNGFFRQDLQKDGFQMYENMTRSGIVPNIYAYNCVISEYCKGGNVDKAFKAFDEMREKGVTYNVVTYNFLIGGLCQVKKL GEAVKLLAQVNRAGLRPNIITYNTLMSGFCDVGKMDNAVRLFNQLKSNGLSPTIVTYNTLIAGYSKIGDLAGALNLVKEM QERQLSPSKVTYTILIDAFVRLNCMENAFALHSLMEKSGLVSDVCTYNVLIHGLCMNGNMKEASKLFKSLGELPHLEPNG VIYNTMIHGYCKEGNSYRALRLLEEMVGNGMVPNVASFCSTIGLLCRDGKWKEAELLLQQMINSGLKASASLYNMVYKVK SEVSNVEPEGKAVGA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 19 | 300 | 282 | 1.5E-130 | – | |
| ProSiteProfiles | 37 | 71 | 35 | 5.305 | ||
| ProSiteProfiles | 94 | 128 | 35 | 8.133 | ||
| Gene3D | 95 | 252 | 158 | 1.3E-38 | ||
| TIGRFAM | 100 | 128 | 29 | 0.0018 | ||
| Pfam | 129 | 175 | 47 | 9.9E-9 | ||
| ProSiteProfiles | 129 | 159 | 31 | 7.541 | ||
| TIGRFAM | 132 | 159 | 28 | 7.3E-4 | ||
| ProSiteProfiles | 163 | 197 | 35 | 11.52 | ||
| TIGRFAM | 165 | 199 | 35 | 1.0E-6 | ||
| Pfam | 197 | 245 | 49 | 1.6E-14 | ||
| ProSiteProfiles | 198 | 232 | 35 | 11.871 | ||
| TIGRFAM | 200 | 233 | 34 | 3.7E-9 | ||
| ProSiteProfiles | 233 | 267 | 35 | 10.479 | ||
| TIGRFAM | 235 | 269 | 35 | 5.7E-5 | ||
| SUPERFAMILY | 249 | 401 | 153 | 8.11E-5 | – | |
| Gene3D | 253 | 330 | 78 | 2.1E-22 | ||
| Pfam | 267 | 316 | 50 | 1.3E-17 | ||
| ProSiteProfiles | 268 | 302 | 35 | 12.627 | ||
| TIGRFAM | 270 | 303 | 34 | 4.9E-10 | ||
| PANTHER | 286 | 408 | 123 | 1.5E-130 | – | |
| ProSiteProfiles | 303 | 337 | 35 | 11.509 | ||
| TIGRFAM | 305 | 338 | 34 | 1.5E-4 | ||
| Gene3D | 331 | 402 | 72 | 1.0E-23 | ||
| Pfam | 334 | 364 | 31 | 5.9E-12 | ||
| ProSiteProfiles | 338 | 372 | 35 | 13.57 | ||
| TIGRFAM | 340 | 373 | 34 | 4.6E-9 | ||
| PANTHER | 370 | 556 | 187 | 1.5E-130 | – | |
| Pfam | 372 | 420 | 49 | 3.3E-16 | ||
| ProSiteProfiles | 373 | 407 | 35 | 12.101 | ||
| TIGRFAM | 375 | 408 | 34 | 1.2E-7 | ||
| Gene3D | 403 | 472 | 70 | 3.9E-19 | ||
| ProSiteProfiles | 408 | 442 | 35 | 9.799 | ||
| TIGRFAM | 410 | 443 | 34 | 4.6E-6 | ||
| Pfam | 439 | 468 | 30 | 3.4E-11 | ||
| ProSiteProfiles | 443 | 473 | 31 | 9.953 | ||
| TIGRFAM | 445 | 470 | 26 | 3.2E-6 | ||
| SUPERFAMILY | 447 | 555 | 109 | 2.62E-5 | – | |
| Gene3D | 473 | 548 | 76 | 3.5E-17 | ||
| Pfam | 478 | 527 | 50 | 7.6E-13 | ||
| ProSiteProfiles | 479 | 513 | 35 | 13.187 | ||
| TIGRFAM | 481 | 515 | 35 | 2.3E-10 | ||
| ProSiteProfiles | 514 | 548 | 35 | 10.293 | ||
| TIGRFAM | 522 | 549 | 28 | 8.1E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0245200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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