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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0246600 |
| Transcript ID | LotjaGi2g1v0246600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | L-threonine 3-dehydrogenase; TAIR: AT1G23740.1 Oxidoreductase, zinc-binding dehydrogenase family protein; Swiss-Prot: sp|Q84V25|ENOXE_FRAAN 2-methylene-furan-3-one reductase; TrEMBL-Plants: tr|A0A1J7FNS5|A0A1J7FNS5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0246600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:71224236..71226327) extracted from Lotus japonicus Gifu genome v1.2.
GATTCATTCATAAATCATGGCAAGCACTCCTTATAGTAATATTCCATCTCAAACAAAAGCTTGGGTCTACTCTCAATATG GAGACATAGAAGAGATTCTCAAGTTTGATCCAAATGTACCTACACCACACCTCAAGTAAGACCAGGTTCTCATCAAGGTT GAGGCTGCAGCCCTTAATCCTGTAGATTCCAAGAGAGCTCTTGGCCATTTCAAGGACATTGACTCTCCTTTACCTGTAAC ATTCTCTTAACCTTGTTCTTCTACCAAAGTTAGTTTTAAAGGCCATTACATTTTAGCACATTATGTTTCGTTCTTCTTTT CTTTTCATCTTACAATTGTTCAATTTTGTGTTTTGTGTCAAAAAGACTGTTCCGGGGTACGATGTTGCAGGTGTGGTGGT CAAAGTGGGAAGCCAGGTGAAGAAACTAAAGGTGGGGGATGAAGTTTATGGTGATGTTAATGAGATCACTTTGGACCATC CAAAAACTGTTGGTTCTTTGGCAGAGTACACTGCTGCTGAAGAAAAAGTTCTTGCTCACAAACCCTCCAACTTGAGCTTT ATTGAAGCTGCTAGCCTCCCCTTAGCAATCATCACTGCTTATCAAGGACTTGAAACAGCTCAGTTTTCTGCTGGCAAATC TATACTTGTTCTGGGAGGTGCTGGAGGAGTTGGATCCCTTGTTATTCAGGTTTGGTAACATCTTCTCATCGCCATTGCAA TGTCAAGTCAAGTGCTAACTTATACACATTGTTTAGCCATTTCAGTTTAGCAATTTTAATTGATTATTTTTGTTGTTTTC TTCAAATAACACTAAGTGTCTGTTTAGCTATTTTAATTGTTTGGTTCCTTGTTTGAGAGTCTTAGAATCAGTTCTAATTG ACCATAATCACTTTTAGATGGCTATATAGATGCTGACAATCGACTTAGAGAATTTATTACAGCTTCTACCGTGGACATAA TCAACTATGGAATTTCATGACTGAATTTCACTACATTACTCTATAGAAATCAATTTTCCCAAGAATGTATCCAACTATAA TCCACTTGACTTTCAACTCACCAACTCACTTTTACCAAAATCAATTCTATGTTCTATCCAAAATCAATTTTGACAACGCC AATCAAAACACGCACCAATTCTGGGATCTTTAAGTTCCTCTTCCATTTACACAAACTTTGTTGCATATTTTTTACACAAT ATATAATATTTTATGTTCTAATGTAGTTAACAATCTTCTATGTGACTGTTTGATGTTATAGCTCGCCAAGCATGTTTTTG AAGCATCAAAGATTGCAGCAACTGCTAGTACTGGCAAACTGGAATTTTTGAGGAAATTGGGAGCAGACTTGCCTATTGAC TATACAAAGGAGAATTTTGAAGAAGTTTCAGAAAAGTTTGATGTGGTGTACGATGCAGTAGGTCAGTTATTTTATATGGA TTAAACCTTGAGTATATATTACTGTTTAACACTAAACTCAAATACTTGATTCAATATACAGGGCAGAGTGACAGGGCACT GAAAGCTGTTAAAGAAGGGGGCAAGGTTGTGACAATTCTGCCACCTGGAACTCCACCAGCTATCCCCTTCTTACTCACTT CAGATGGGGCAGTGTTGGAGAAACTGCAACCTTACTTGGAGAGTGGCAAGGTGAAGCCAATACTGGATCCTAAGAGCCCC TTTCCATTTTCTCAGACTGTGGAAGCATTTTCCTACCTCAACACTAGCAGGGCTACTGGGGAAGTAGTCATATATCCCAT CCCATGAGCATAATCAATTAATAGCATGTTTGGTTATGTTTAGTCAAACGCTAAGACTTGTAGCTTCTAAGTTCTAACTA TAAGTGAGTCTAGAGCATTTCACCATGTAACCGAACATGCTATAAGCAAATAAACCTGTGGCCTTAACTTATGCTATTTT GGCTACTTGAAGGAATGTGTGTGTTTGCATGCCTGCATAAATTGTAATAATTAAATCTCTTAGAGATATGCTTGTTTGTT ATTTTTTTTTAATAATTACCTTGTGTATCAGTATATGGTTTATCTTCTGGCTACAGAATATGCAATCAATGACATGTTTC GTTGTTCAACAG
CDS sequence (LotjaGi2g1v0246600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTCGTTCTTCTTTTCTTTTCATCTTACAATTGTTCAATTTTGTGTTTTGTGTCAAAAAGACTGTTCCGGGGTACGA TGTTGCAGGTGTGGTGGTCAAAGTGGGAAGCCAGGTGAAGAAACTAAAGGTGGGGGATGAAGTTTATGGTGATGTTAATG AGATCACTTTGGACCATCCAAAAACTGTTGGTTCTTTGGCAGAGTACACTGCTGCTGAAGAAAAAGTTCTTGCTCACAAA CCCTCCAACTTGAGCTTTATTGAAGCTGCTAGCCTCCCCTTAGCAATCATCACTGCTTATCAAGGACTTGAAACAGCTCA GTTTTCTGCTGGCAAATCTATACTTGTTCTGGGAGGTGCTGGAGGAGTTGGATCCCTTGTTATTCAGCTCGCCAAGCATG TTTTTGAAGCATCAAAGATTGCAGCAACTGCTAGTACTGGCAAACTGGAATTTTTGAGGAAATTGGGAGCAGACTTGCCT ATTGACTATACAAAGGAGAATTTTGAAGAAGTTTCAGAAAAGTTTGATGTGGTGTACGATGCAGTAGGGCAGAGTGACAG GGCACTGAAAGCTGTTAAAGAAGGGGGCAAGGTTGTGACAATTCTGCCACCTGGAACTCCACCAGCTATCCCCTTCTTAC TCACTTCAGATGGGGCAGTGTTGGAGAAACTGCAACCTTACTTGGAGAGTGGCAAGGTGAAGCCAATACTGGATCCTAAG AGCCCCTTTCCATTTTCTCAGACTGTGGAAGCATTTTCCTACCTCAACACTAGCAGGGCTACTGGGGAAGTAGTCATATA TCCCATCCCATGA
Protein sequence (LotjaGi2g1v0246600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFRSSFLFILQLFNFVFCVKKTVPGYDVAGVVVKVGSQVKKLKVGDEVYGDVNEITLDHPKTVGSLAEYTAAEEKVLAHK PSNLSFIEAASLPLAIITAYQGLETAQFSAGKSILVLGGAGGVGSLVIQLAKHVFEASKIAATASTGKLEFLRKLGADLP IDYTKENFEEVSEKFDVVYDAVGQSDRALKAVKEGGKVVTILPPGTPPAIPFLLTSDGAVLEKLQPYLESGKVKPILDPK SPFPFSQTVEAFSYLNTSRATGEVVIYPIP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| SignalP_EUK | 1 | 18 | 18 | - | – | |
| Phobius | 5 | 13 | 9 | - | – | |
| SMART | 11 | 266 | 256 | 1.4E-10 | ||
| Phobius | 14 | 18 | 5 | - | – | |
| Phobius | 19 | 270 | 252 | - | – | |
| Gene3D | 20 | 266 | 247 | 1.2E-89 | – | |
| SUPERFAMILY | 21 | 116 | 96 | 6.74E-22 | ||
| PANTHER | 21 | 270 | 250 | 3.2E-148 | – | |
| PANTHER | 21 | 270 | 250 | 3.2E-148 | – | |
| CDD | 23 | 266 | 244 | 1.21987E-71 | – | |
| SUPERFAMILY | 84 | 210 | 127 | 6.03E-31 | ||
| Gene3D | 102 | 216 | 115 | 1.2E-89 | – | |
| ProSitePatterns | 111 | 132 | 22 | - | ||
| Pfam | 155 | 266 | 112 | 1.5E-16 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. |
Expression pattern of LotjaGi2g1v0246600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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