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LotjaGi2g1v0250200.2

Overview

Field Value
Gene ID LotjaGi2g1v0250200
Transcript ID LotjaGi2g1v0250200.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Ribonuclease H; TAIR: AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|P9WLH4|Y2228_MYCTO Uncharacterized protein MT2287; TrEMBL-Plants: tr|A0A0B2Q0J9|A0A0B2Q0J9_GLYSO Uncharacterized protein; Found in the gene: LotjaGi2g1v0250200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:71603961..71608608) extracted from Lotus japonicus Gifu genome v1.2.

CTGCACTCACACAGTGTCTCGCTCCTGTCTTGTCCTCTCACAACATCACATCACTTTCTGTCTTCGAAACTTTGGCTTTT CAAACTCCAAACTGGGTTTCTCTGATCACTCAGAACGTGATTTTGTAACTGGGTTTGCACACTGTGTAATCTACAACGAT GAACTTCAAATTTTGAGTTATTTTATATAAATTTTGCTGTTTAACTCAACTATGATATCACCCCGTTGTGCTTGCAGTGT TGCAATGGCTGAGGAAAAGGACGCTTTCTTCGTTGTAAAGAAGGGAGATGTTGTTGGCGTTTACAAGTCTTTCAGTGACA TTCAACCTCTACTTGCATCATCTGTATGTCTTTTGTTTTTCAACCTCCTTGATGCAAATTTTTTGTCTTTGGAGTTTTTC TGTAAATGGGTATCAGCTCTTTGTGATGTTGAACCTCTAAATGGTGTCTATACACTGCTAAATTTACATCAAACTTGTGG GGTTGTATACTTGTATTTTTTGTTCTGGGAACCATCATGTCTTTTTCATTGTTTTGGTTACAAATTACAATGGAAGTTGA GTTTCTGCATTTTCCAAGCAGGTACCTGGTGAGACTGTAAGTGTTTACAAAGGGTATTCTTTACCTCAGAAAACTGAGGA GTATCTTGTCTCACATGGGCTCAAGGGAGCTCGTTACTCTATTGGTGCTGCTGATGTGCAGGAGGGGCTGTTTGGAAGGC TTGTTGCTTGTCCTTATCAGGTTCGAGACACTCTTCATTCCTTTATAATATTTGTGGAAATTTCCTTGCACATGGGATCA ATGTCCCTTTTTCTGTCTAAAAGCTTGATAATGTTAACTTGAGCTTTATGTTTCTACTTTTGGTTATCAGCTTACATTTT TTTTTGGGGGGGGGGGACTTCACTTCTAGGATTATGGTTGATTGTAATGCGTATGGTTCATTTGCAATTAGCATTGTTGA TGAAAACTTCTTGAACTATTTTTTAACTTCAAAGCTTAAGCTTAAGCTTTCGCCATTTATCACTCTGGCATGTTAGCAAC TGAAACAAGTTTAACTTCAAGAAGTGATCATATTTCTTTCAGGAACCACATGCTTATGTAGGAACAGCTTCGGTCGTGAA TTCCTCATCAAAGAGCTTGCAAGGTGCCAAGCAATTTAATGCTAGTGTAAGTTATCAACATTGACATATCTCAACCAGGA AATTGCACCTTAGTATTGCCAAATTATCACTCTGGCAAGTTAGCAACTGAAAAAAAAGTTTAACTTAAAGAAGAGATCAA ATTTCTTTCAGGAACCACATGCTTATGTAGGAACAGCTTCGGTTGTGAATTCCTCATCAAGGAGCTTGCAAGGTTTCAAG CAATTTAGTGCTAGTGTAAGTTATCAACATTGACATATCTCAACCTGGAAGTTGCACCTTAATATTCGAAAAAGAAATGC TATTTACTTGTGTAAAATGCACATTTCGAGCTTTACTGTGATCTTCACTGGTAAGTCATGAGTGTTAAATAACATGTTCC TGAGGTCCACCCGTAGCCACCTTGGCCCCCATATTTTGAGAAGCGCTGGACTTCTGTTGTCTGTTGAAGTTAGTGGGATG TCAGCAGGTCCCTTTTTAACTTTTGAATAGATCCAAGTTAGTATTGTCAGTGCTGTGGTCTTACTCTCGTACAGTTTAGG CAGTTGAAGGTGTGTTTTTCATTGTTTATTATTGGTTTGTTTTACCTTTTTTTGTTTCTTGAGCAGGAGGTGCCAGGGTC ATCTACATTTTCAAATTTACCGGAGCACCACATAGGCGGTAGTGGATTTCAGGTCGAGCGGCCTACTTGTGTAAGTTGGT TTGTGTTTTTTAAACGTTGCTAATATCATTATACTAGACTACTAGAGTATAGTTTGCAGGTCACTTAATATTGTGTGATG CAGTTGGTAACTGTCCAAGCTCCTTTTCCATTGCCTGATTTTCTTTATCTATGCAGTTATCAGCAAGTGGTTATAAATTT AGAAATTATGGCATCATAAAATTCAAATCCACTACAAAGGCTTGGCTGTCAATATTACCTCTAGTTTAGAGCTTAGACAT TTCCTTGATGATTTTCTGCTATAAGGATGGGTCGGTGACTGTGTGGGACTTATTGTTCATTGTTAAGTTATCGCTGATGC AACTCTTAAATTCCAAGCATCATATTAAATTGTTCAACTCTTAATACATGGATGTGTGCAAGTAGTGGTTCTGTAGCTGA AGGCTGGTGGCTGCACCAGCATCATATTAAATTGTGCTCTGTATTATCTTTCTGTGCTGTTTAATTCAACTGAGTTTCAT TTGTTGTTCAATCTGTTTGGAAAAAATAGTAATTTTTTGAACTTTCATGACATTTATAAGAGAAATTTTTTCCCCTTTTA ACTTTGACATGTGGAAGCACATATGTTGGGTTGGAGGGCTTTTAAACTGGATGGGACGTTTCAGAAATTTTCTTTGAAAT AAATTAATGCATTTGGCCTTCAGATTGAATGCTGAATTTCTTGATTGATTGTCCACCTCTCTTCTTAGCTGGATTATTTG GCATACTTACAACAACAAAATCTTACTTGCAGCTTTCTTGTAGCCTTGAGTTTGATGGTGCTTCCAAAGGAAATCCCGGA CCCGCTGGTGCAGGAGCTGTGCTGCGTGCTGATGATGGGAGCAAGGTGTCTACTGTATGCTACAATTCAACTTGTTATTA TGTTCTTTAAAGAATATTGCTAACTCTTAGGTCTCTTCATAGGTCTATCGGTTGCGTGAAGGAGTTGGCACTCAAACCAA TAATTTTGCTGAATATAGGGGTTTAATTTTAGGATTGAAACATGCCATCAAGGAAGGATACAAGCACATTCAAGTCAAAG GAGACTCCATGCTTGTTTGCAACCAGGTTTGGTGTCTTTTCAGTTTATGCATTATTCTTAATAAGTTCCAATATTGAGAG AGATTTACCAAGGATTTCTCTTCAGATTTTTGTACAACTTTTTATCTAACCAGTTTATCATCTGATGTGATTGCTTTTGC AACAGGTTCAGGGTTTATGGAAAATCAAAAACCAGAATATTGCTTCCTTGTGTAGTGAAGCTAAGGAGCTGAAGAATAAG TTTCTATCATTCAAGATCAATCATATTCCTAGGGTACCAACTTACTCATTTGGTCTAAGTTTTATATTTATTTACAAAAA TGAAGAAGATTTTGGCTAAATTGCCCCCTTCACCCTTATATTAATGCGGAGTGGACAACTCTGGATAAACAAAAGATGAA ATGTTGAAAATAATTTACTAGCATTTGACAATCATTTATATGTCAGTGTTTCTCATGGCTTTTAATTCTCATGCCTACCT ATAAATGAGGCTATGTGATCCAAATGCTTGAGTAGCTAAATTATCTACCATTAAAAATCATTGTTCCAGTTTTAACTTAA CTTTGAGCAGTATTCCTACCAATATTGTTTAAGCTATTTGTATGGTTCCTGGGAGTATTTATGTGGAGTTAAGAACTTAA GATCACTTGCAGCCTCAATTGTTTATATGAATATTTACATGCAGTTCTTACTATTTTATCTTGTTTTTTGGATGACAACT ACCTTAATTTTTGCCTCACTTTTTTGTGATGTTCCAGGAATATAACTCCGAAGCTGATGTTCAAGCTAACTTTGGCATAA GTCTCCGAGGTAAGACCCCAAGGATTTCTAAGTTACCTATACGGTTAACTTTGCTTTCCTGATCAAATGAAAATCCCCTT AGCAAAATGATTTGCAGCCAAATATGATCTTGAAACCTAAAAGCCGCTGTGGTTTGTATGTGGTTTTAACTTTCTCTTCA TATGTTTCCATTTTCTAATTACAATCTACGATAACGCTACCTTTTCTGTTAACAGAAATTTAGGAAGAAAAAATAGTGTA TACAATCTCTTAGCTTTCTATAGTTTTAACTTCATATCTAGATTTGGAACGGGAAAATAATTTTTGTTGGCTCTTCAACT TTTGCAGCTGGTCAAGTTGAAGAAGTTCGTGAGGTTCCTTAATGCATTGACTGACAGTACCAGTTATGGCATGCCCCTTT TGCTTTCAGCAAGTGTAAATTCGGTAGCTGTAACAAAGAAGCAATTTAAATTTCTAACAACATATTTTATGTGACTTTTT TTGTATAGGCAGTTACGCCCTCCCTGCCTTGAATTGGCTTTGCAACTTAGCATATGCTAAGTTGCTAACCATTCTGTTTG TCTAACTCTAGACATGCTAAATAGTGTAGATGCCTAACATTAGCTTTGGGACTTAAACTTGTGCTGTAAAGCTCTCTCTG CAGTAGAGTCTAAAAGTGAGATATTTATCTTAATGGAAAGATTCTTTGGCCTTTAGGCGAGAGACAAAAACTAGTCTTCA CAAAAATACCGGGACAATTATCTTAATGGAGAGATTCTTTTGCCTTTAGGCGAGAGACAAAAACTAGTCTTCACTAAAAA TACCGGGTTAAAAAAATGTATTAAACCCATTTTAGCTTCACCTTAATTTTTTTTACCATGTATTTAAAGATGCATTTATG TTAAGGGAGTTTTACAAATTTAATTATAATAATACCTCCATCTCTTCCTTCTCCCACTAGTTTTTTTTTAATTGGTCGTC CATTGTCA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0250200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGAGGAAAAGGACGCTTTCTTCGTTGTAAAGAAGGGAGATGTTGTTGGCGTTTACAAGTCTTTCAGTGACATTCA ACCTCTACTTGCATCATCTGTACCTGGTGAGACTGTAAGTGTTTACAAAGGGTATTCTTTACCTCAGAAAACTGAGGAGT ATCTTGTCTCACATGGGCTCAAGGGAGCTCGTTACTCTATTGGTGCTGCTGATGTGCAGGAGGGGCTGTTTGGAAGGCTT GTTGCTTGTCCTTATCAGGAACCACATGCTTATGTAGGAACAGCTTCGGTCGTGAATTCCTCATCAAAGAGCTTGCAAGG TGCCAAGCAATTTAATGCTAGTGAACCACATGCTTATGTAGGAACAGCTTCGGTTGTGAATTCCTCATCAAGGAGCTTGC AAGGTTTCAAGCAATTTAGTGCTAGTGAGGTGCCAGGGTCATCTACATTTTCAAATTTACCGGAGCACCACATAGGCGGT AGTGGATTTCAGGTCGAGCGGCCTACTTGTCTTTCTTGTAGCCTTGAGTTTGATGGTGCTTCCAAAGGAAATCCCGGACC CGCTGGTGCAGGAGCTGTGCTGCGTGCTGATGATGGGAGCAAGGTCTATCGGTTGCGTGAAGGAGTTGGCACTCAAACCA ATAATTTTGCTGAATATAGGGGTTTAATTTTAGGATTGAAACATGCCATCAAGGAAGGATACAAGCACATTCAAGTCAAA GGAGACTCCATGCTTGTTTGCAACCAGGTTCAGGGTTTATGGAAAATCAAAAACCAGAATATTGCTTCCTTGTGTAGTGA AGCTAAGGAGCTGAAGAATAAGTTTCTATCATTCAAGATCAATCATATTCCTAGGGAATATAACTCCGAAGCTGATGTTC AAGCTAACTTTGGCATAAGTCTCCGAGCTGGTCAAGTTGAAGAAGTTCGTGAGGTTCCTTAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0250200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAEEKDAFFVVKKGDVVGVYKSFSDIQPLLASSVPGETVSVYKGYSLPQKTEEYLVSHGLKGARYSIGAADVQEGLFGRL VACPYQEPHAYVGTASVVNSSSKSLQGAKQFNASEPHAYVGTASVVNSSSRSLQGFKQFSASEVPGSSTFSNLPEHHIGG SGFQVERPTCLSCSLEFDGASKGNPGPAGAGAVLRADDGSKVYRLREGVGTQTNNFAEYRGLILGLKHAIKEGYKHIQVK GDSMLVCNQVQGLWKIKNQNIASLCSEAKELKNKFLSFKINHIPREYNSEADVQANFGISLRAGQVEEVREVP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46387
6 310 305 8.1E-107 –
PANTHER
PTHR46387:SF3
6 310 305 8.1E-107 –
ProSiteProfiles
PS50879
169 300 132 14.659
IPR002156
SUPERFAMILY
SSF53098
174 296 123 3.04E-29
IPR012337
Gene3D
G3DSA:3.30.420.10
174 311 138 1.9E-36
IPR036397
CDD
cd09279
175 300 126 6.00774E-51 –
Pfam
PF13456
177 297 121 4.0E-28
IPR002156

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0004523
Molecular function RNA-DNA hybrid ribonuclease activity Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0250200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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