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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0257900 |
| Transcript ID | LotjaGi2g1v0257900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox protein; TAIR: AT5G15150.1 homeobox 3; Swiss-Prot: sp|Q00466|HAT7_ARATH Homeobox-leucine zipper protein HAT7; TrEMBL-Plants: tr|I3T0C8|I3T0C8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0257900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72395194..72398269) extracted from Lotus japonicus Gifu genome v1.2.
CTTACACATACACACTCATTCTCATATTTTCTCTCTCTGCTGTCTGTCTCTCAACCTAAAAATCGCTGTTTTTCGGTCTG TGTACCTATCATCATCACCATCCCTCTTTCTGAAAACTCTGTCACCATGAGAGTGAGAGCCAAACTCCTCATCCCTTAAA TCCCTCAGTACTCTGCTGAGATCCATAACACTAGACTCTAATCAATTATTTTTGCATGAATGAATGAATGATCCATATAT ATCATCAATCTTCACTATTATCTCTTCTCCTTTCACCATGGCCTTTCCACCTTCTCACACCTTCCTCTTCCACAATGAAG ATCACCACAACCTCCTCCGTTCAACTTCAACCTCTCTCAACGCCTTCCCTTCTTTCCCACCCCAACAACCACACTTTCAA GGTCAAAAAAATTTCATCAACATACACACACTCACACTAGCTATAGCTTGTATCTCACTGCCGGTTTCCTGTTGGTTCGG AGAATCTCATCCAACCAATAGGTCTTCGGTTCAAAACCAGCGCAACATCGAAAAGCTTTAGTATCTCACTATAAAGTTTT TTTTTTCTTTGATCAGGTGGTGGTGGGGGTGCAGCGTTCATGATGAAGCGATCGGTGTCGTTTTCAGGCTTAGAGATGAA CAACAACAAGTGCGATGAAGTGCTGCATGGCGGAGACGATGATTTGTCCGATGATGGGTCCCAGCTAGGGGAGAAGAAGA AGAGGCTGAGTCTGGAGCAGGTAAAGGCGCTTGAGAGGAGCTTCGAGCTCGGGAACAAGCTTGAGCCTGAGAGGAAAATG CAGCTGGCTAAGGCTTTGGGGTTGCAGCCCAGGCAGATCGCTATATGGTTCCAGAACAGGAGGGCTAGGTGGAAGACAAA GCATCTTGAGAAGGAGTATGAAGTGCTCAAGAAGCAGTTTGAAGCTGTTAAGGCTGATAATGATAACCTTAAGGCCCAGA ACCATAAACTTCATGCAGAGGTAACAAAAAATCGCTGTGTTTTGTAGCTAGTGTAGTGTAATTGAGTGATTGGATCATTG GATTTTCATTATTCTAGCCCTTTTATGGATCTGTAATAATGATATTCAGAGGGAGGCAAGACACTCAACAAACTCTAATT TTCCCTCTATTTCCCGTCTGATATATCATATTCATTGCTTCTCTTTCTTATCTTCGCTTCTCAGTGAGAGTGTGTTGTTA GGTTGTCAACAAATCATTTTCGTTACATTATGTAGTGATGGTTTTGGAAAAATGAGAACTTGAAACTTAGGATCTTGAGG GGTTGATTAACTAGATTACATTTAAATTTTCTTAATTAATCTTGTTTCAAAATATAATCTTGATTCAAAATATATCTTCA ATATATGTTCATCATAATATAATAAGTGTAGATGTGAGTTTTGTTCCAAGAATCAAATGTTTGTTCTTGGGATGCTTAAT TCATTGGATTTTGGAAACAAGGGAATGGAGTTTTCTTCTTCCTTTAATTTGTTGTTCTTTTCACCTTGTTTTTCACCAAA TTTTTATCTTCTCCTACTTGAAATGGTGTTTGATTTACTAGAAGTGTTCTGAAGGTTCTATTAGCCATTTAAGTGCTCTT CCTTTTCCTCAATAATGTATGCAATTGATATTTTTTATTGTGTGCATCAAGGGTTTCAGCGTGAGAGACTAATTCCTTTG GACACGCTGAATGTTCAACAATTTGAGTTAGTTTTATGAGGAAAAAAAAATGAGGCCTTTTTTTTTCTTTTTTGAGTTTT GGTGCTTCTTGATATTTACTGAGTATACTCCATTTTGATTAGTTATGATCCTTTGTGACTTTTTAAAGTGATTGATTCCG TCATTATTAACTTTCTGCTTGAATATTGCTAGTGGATCATTCTTGGGAAGAGTCTGTGTGCCAGTGTCAGAATCACCCAA AACTGCAAACTAATAGAAATGTTTGTTTTTTTTCTCTTACAATTGAATACTCTACTGTGTGCTATAACTATTCCAAGTTG CAGTGAGAAAAAGACAAGGTTGCATTTGATCTGATTAAAGCTTAGCCTGATCCACATGGAACAAAAATAATAATAACACA TGCTGAATCTGGGAATCAAAAGCAGTAGATGTTGATATATGATCACCTAACTCTTTTGTTTTTTCTATTTGGTGGTGTTT GCAGTTACAATCTCTTAAAAATAGGGAATGCTGTGAAACTGGAACAATAAGTTTCAAAAAAGAAAATGAGGGTTCTTGGA GCAATGGAAGTGATAACAGCTCAGACATCAATTTGGAACCCTCAAGAACACCAATGATGAACAGTCCTGCTGTATCTTCT GATCAGAATGGTAAGAATCTTCTACCAACTTCACTAAAACCCACCAGCATAACTCAGCTTCTCCAATGCTCATCAAGAAC AGATCTTCAAGATGAAAGCTTCTCCAACATGTTTCACAGCATTGATGATCAGCAGCAGAATTTTTGGCCCTGGCCTGAGC AGCACCATAATTTTCATTGAACCAACATCATCATCATTTGAAGGTGAAACTTGAAAATGCGAAAAAGTTCATGAGGATTA TATCTCAAACCTTTAATTCTTTTTCTTTCTACCAGTTTTTCAATTTATGTTTTTGATGTAGATTGGTGTATAAAGTTCAA ACAGATCTATCATGAGGAGATGGTGGACTTTGAGTAGTGCAACTTCTTTCCTACTACTACTACTACACTTTTATTATGTG TTTTGCTAAAGTATATACTTTGTGCTAAGTTGAAATAAAATATCATAAATCATATAGTTATTATTATACATGTGACTCTA GGTGGATTTCCAGCTCGGTCACGTAGTATGGGCCATGAATAAAAATAGGATTCTCTGTCTGTCTGTCTGCATTCTTTCTT TAAGAACATATTTTATTTGATGTTGGTGCCTTGGAATCATGGTATCATGTCATGGAAAATTGCATGAAAAAAAGTGTGTT TGGAGAAAGTTCAGCTCATGGCTTTTGGTAGTGACCAGAGTGAAGAAATGGGTGAGGCATGTCATTTTATGAGTTGAAGA AAAAGCCAAATCTAGCTGTGAGTTTACAGAGAGTAG
CDS sequence (LotjaGi2g1v0257900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGATCCATATATATCATCAATCTTCACTATTATCTCTTCTCCTTTCACCATGGCCTTTCCACCTTCTCACACCTT CCTCTTCCACAATGAAGATCACCACAACCTCCTCCGTTCAACTTCAACCTCTCTCAACGCCTTCCCTTCTTTCCCACCCC AACAACCACACTTTCAAGGTGGTGGTGGGGGTGCAGCGTTCATGATGAAGCGATCGGTGTCGTTTTCAGGCTTAGAGATG AACAACAACAAGTGCGATGAAGTGCTGCATGGCGGAGACGATGATTTGTCCGATGATGGGTCCCAGCTAGGGGAGAAGAA GAAGAGGCTGAGTCTGGAGCAGGTAAAGGCGCTTGAGAGGAGCTTCGAGCTCGGGAACAAGCTTGAGCCTGAGAGGAAAA TGCAGCTGGCTAAGGCTTTGGGGTTGCAGCCCAGGCAGATCGCTATATGGTTCCAGAACAGGAGGGCTAGGTGGAAGACA AAGCATCTTGAGAAGGAGTATGAAGTGCTCAAGAAGCAGTTTGAAGCTGTTAAGGCTGATAATGATAACCTTAAGGCCCA GAACCATAAACTTCATGCAGAGTTACAATCTCTTAAAAATAGGGAATGCTGTGAAACTGGAACAATAAGTTTCAAAAAAG AAAATGAGGGTTCTTGGAGCAATGGAAGTGATAACAGCTCAGACATCAATTTGGAACCCTCAAGAACACCAATGATGAAC AGTCCTGCTGTATCTTCTGATCAGAATGGTAAGAATCTTCTACCAACTTCACTAAAACCCACCAGCATAACTCAGCTTCT CCAATGCTCATCAAGAACAGATCTTCAAGATGAAAGCTTCTCCAACATGTTTCACAGCATTGATGATCAGCAGCAGAATT TTTGGCCCTGGCCTGAGCAGCACCATAATTTTCATTGA
Protein sequence (LotjaGi2g1v0257900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNDPYISSIFTIISSPFTMAFPPSHTFLFHNEDHHNLLRSTSTSLNAFPSFPPQQPHFQGGGGGAAFMMKRSVSFSGLEM NNNKCDEVLHGGDDDLSDDGSQLGEKKKRLSLEQVKALERSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKT KHLEKEYEVLKKQFEAVKADNDNLKAQNHKLHAELQSLKNRECCETGTISFKKENEGSWSNGSDNSSDINLEPSRTPMMN SPAVSSDQNGKNLLPTSLKPTSITQLLQCSSRTDLQDESFSNMFHSIDDQQQNFWPWPEQHHNFH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 19 | 300 | 282 | 6.4E-116 | – | |
| PANTHER | 19 | 300 | 282 | 6.4E-116 | – | |
| SUPERFAMILY | 98 | 162 | 65 | 6.84E-19 | ||
| ProSiteProfiles | 101 | 161 | 61 | 17.086 | ||
| SMART | 104 | 165 | 62 | 7.4E-18 | ||
| Pfam | 106 | 159 | 54 | 1.7E-15 | ||
| CDD | 106 | 162 | 57 | 2.37732E-15 | ||
| Gene3D | 109 | 159 | 51 | 3.2E-18 | – | |
| PRINTS | 132 | 141 | 10 | 1.1E-5 | ||
| ProSitePatterns | 136 | 159 | 24 | - | ||
| PRINTS | 141 | 157 | 17 | 1.1E-5 | ||
| Coils | 153 | 201 | 49 | - | – | |
| Pfam | 161 | 201 | 41 | 5.9E-14 | ||
| MobiDBLite | 214 | 252 | 39 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi2g1v0257900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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