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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0259300 |
| Transcript ID | LotjaGi2g1v0259300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb factor; TAIR: AT3G28910.1 myb domain protein 30; Swiss-Prot: sp|P81392|MYB06_ANTMA Myb-related protein 306; TrEMBL-Plants: tr|I3SB61|I3SB61_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0259300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72686902..72688927) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAGTGGATCATAGAGTCACCAGTTTTATCTCACTTCACATTAATGGTCCCTATGGGGTTCAGAGACTTTAAAAAGT GGATCATAGAGGTTTCCCAGTGCAACCACATTGAATGCACCACGCGGTTTTGAAAGAAGGACATTTCATGAGAGAGCTGA CTTTGGCCGTCTTACTCTCCTTAATAGAGTTAAAGCATTTTGCTGTCAACTTTTGACTATTTGCCACCCTTCTCTTCTTT CTTTCCCTATTTATACACCCCTTGCTTTTGACTCTTGCCTCAACACCACACCTTATAGTAGCAAGTGAGGGAGAAAAAAA GCTTAAAGTTTCAAGTAGAAAAGAAAGAGATCATCAATCTCATAGCTAGAGAGGTACAAGTGTAGTGAAAGATGGGAAGG CCACCTTGTTGTGATAAAGAAGGTGTGAAGAAAGGACCATGGACCCCTGAAGAGGACATCACTTTGGTCTCTTATATACA AGAACATGGTCCTGGCAACTGGAAGGCTGTTCCTGCCAATACTGGTACTAATCTACTTTTGATCTTTGTGATTTTATGAT AGTGGATTTTCATTTTCTTTTAATTTGTCTTGTTTTATTAAATATAACATGTTTAGATTAACTTTTTTCCATCAAATCAA TCTTGTAACTCATAAGCTATTTCTGACTTCAAACTTAATTGTAGAAGGTTTCCAAACACGCGTTAACAGTATCATTTATG GAAACACGCAGGTTCTTTTAGTCTTCATGTGTGATCTAAAATGATCTCTCTTTTTTTTCAGGGTTGTCAAGGTGCAGTAA GAGCTGCAGACTTAGATGGACCAATTACCTGAGGCCAGGAATCAAAAGGGGTAACTTCACAGAACAAGAGGAGAAGATGA TAATCCATCTTCAAGCACTTTTAGGGAACAGGTAAATAAATTCATCCTCAACCTCTTTAAATTTTACTACAACAAACACC TAGTTTAGAAAAAAAATTATACTCGATTCTAAAGCCAGAAAGTTTCAAATCAATTATACAAAGAAGCTTCTGAGTTTCAG AGTCGGTTTTGAGGAAATAGAAGCTGATTAAAACATGTGTTGGATTTATTTTTTTTCTTTTGCACTCACATGCTAAACCA AAGTGCATTGATTATGGTGCAGATGGGCTGCAATAGCCGCATACCTACCACAGAGAACAGACAATGACATCAAAAACTAT TGGAACACTTATTTGAAGAAGAGACTCAATAAATTGCAAACAGGTGCTGCTGATGGAACCTTGGGACATGCAGGGTTTTC ACCAATTTCTAGGCCAATGCCAAGAGGTCAATGGGAAAGAAGACTCCAAACAGATATTCACATGGCCAAGAAAGCTCTCA GTGAAGCTCTCTCACCAAACAACAACACATTCACCTTGTTACCTGAATCAAACTCAACCCTTTCGAGTGAAAGCTCATTC TGTTCCACTAAACAAACTCAATCTTCACCATGCTATGCTTCAAGTGCTGACAACATAGCACGTTTGCTGAAGGGTTGGAT GAAAAAATCACCAAAGGGATCATGTTCCAAGACCCTGAATGACACTGATTCTACTAGTGAAGGATACTCAATTGTTGCAA AGGGAAGCAACAACTGTGTTGAATTGAATGAGACTTTTGAGTCCTTGTTTGGTTATAATGAGTCTTTGGATTCTTTAAAT TCTGAGTCCCCTGAAGCTACCCTTTTCCAAGATGAGAGCAAGCCTGCAGGGGTTGGTGCTGAAATGCCATTCTCTTTGCT TGAGCAATGGCTTCTGGATGATGCTGGTTATCAAGAGAAATTGAGCTTGCTGCAGTGAAATCACTGAAATTTCCACGATA TTTTAGGATATTGGATCTCAAATTGTAACATGAGGGAATCTGATTAAAAAAACTGCTTTTTCTTAGTTTTAGGATTAATT GAAGCCTGATCAAAAAACTCACTTTGGCCTTTTTCAACTTTTTGGTGCTAGAAGTGTATATTCCAATGCGAAATTGACAT TAGTGTTTCATCATCATGTTCTATAA
CDS sequence (LotjaGi2g1v0259300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGGCCACCTTGTTGTGATAAAGAAGGTGTGAAGAAAGGACCATGGACCCCTGAAGAGGACATCACTTTGGTCTC TTATATACAAGAACATGGTCCTGGCAACTGGAAGGCTGTTCCTGCCAATACTGGGTTGTCAAGGTGCAGTAAGAGCTGCA GACTTAGATGGACCAATTACCTGAGGCCAGGAATCAAAAGGGGTAACTTCACAGAACAAGAGGAGAAGATGATAATCCAT CTTCAAGCACTTTTAGGGAACAGATGGGCTGCAATAGCCGCATACCTACCACAGAGAACAGACAATGACATCAAAAACTA TTGGAACACTTATTTGAAGAAGAGACTCAATAAATTGCAAACAGGTGCTGCTGATGGAACCTTGGGACATGCAGGGTTTT CACCAATTTCTAGGCCAATGCCAAGAGGTCAATGGGAAAGAAGACTCCAAACAGATATTCACATGGCCAAGAAAGCTCTC AGTGAAGCTCTCTCACCAAACAACAACACATTCACCTTGTTACCTGAATCAAACTCAACCCTTTCGAGTGAAAGCTCATT CTGTTCCACTAAACAAACTCAATCTTCACCATGCTATGCTTCAAGTGCTGACAACATAGCACGTTTGCTGAAGGGTTGGA TGAAAAAATCACCAAAGGGATCATGTTCCAAGACCCTGAATGACACTGATTCTACTAGTGAAGGATACTCAATTGTTGCA AAGGGAAGCAACAACTGTGTTGAATTGAATGAGACTTTTGAGTCCTTGTTTGGTTATAATGAGTCTTTGGATTCTTTAAA TTCTGAGTCCCCTGAAGCTACCCTTTTCCAAGATGAGAGCAAGCCTGCAGGGGTTGGTGCTGAAATGCCATTCTCTTTGC TTGAGCAATGGCTTCTGGATGATGCTGGTTATCAAGAGAAATTGAGCTTGCTGCAGTGA
Protein sequence (LotjaGi2g1v0259300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRPPCCDKEGVKKGPWTPEEDITLVSYIQEHGPGNWKAVPANTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIH LQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKRLNKLQTGAADGTLGHAGFSPISRPMPRGQWERRLQTDIHMAKKAL SEALSPNNNTFTLLPESNSTLSSESSFCSTKQTQSSPCYASSADNIARLLKGWMKKSPKGSCSKTLNDTDSTSEGYSIVA KGSNNCVELNETFESLFGYNESLDSLNSESPEATLFQDESKPAGVGAEMPFSLLEQWLLDDAGYQEKLSLLQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 284 | 282 | 1.9E-129 | ||
| PANTHER | 3 | 284 | 282 | 1.9E-129 | – | |
| ProSiteProfiles | 9 | 65 | 57 | 25.128 | ||
| SUPERFAMILY | 11 | 108 | 98 | 4.03E-31 | ||
| Gene3D | 12 | 67 | 56 | 1.7E-19 | – | |
| SMART | 13 | 63 | 51 | 5.1E-15 | ||
| Pfam | 14 | 61 | 48 | 3.9E-16 | ||
| CDD | 16 | 61 | 46 | 1.11844E-11 | ||
| ProSiteProfiles | 66 | 116 | 51 | 20.381 | ||
| SMART | 66 | 114 | 49 | 7.3E-16 | ||
| Pfam | 67 | 112 | 46 | 3.4E-15 | ||
| Gene3D | 68 | 125 | 58 | 3.5E-19 | – | |
| CDD | 69 | 112 | 44 | 9.73023E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0259300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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