Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0260600 |
| Transcript ID | LotjaGi2g1v0260600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB-related transcription factor; TAIR: AT5G15310.1 myb domain protein 16; Swiss-Prot: sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39; TrEMBL-Plants: tr|G3FSI3|G3FSI3_LOTJA MIXTA-like transcription factor; Found in the gene: LotjaGi2g1v0260600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72881229..72883807) extracted from Lotus japonicus Gifu genome v1.2.
GCCCATCTCTTCATTTACGAAACCCTTTGTCCTTTCTTTCTCTCACTCTCTCTCTCTTTCCCCCACACAGTTTTCTTCTT CTTCTCTTCATTTTCTATATAAATAAGAGGAGAAGCTACTGCAGTCTTTAGCTAGCGTTCCTTCCACTTAATTCTAAATG GGAAGATCACAATGTTGCGACAAGGTTGGTTTAAAGAAAGGACCGTGGACTCCAGAGGAAGATCAGAAGCTTTTAGCTTA CATTGAAGAGCATGGCCATGGAAGCTGGCGTGCTTTGCCTGCAAAAGCTGGTAAGTTTTTCTTTTAATTTCTTTTCCTTG ATAGATAATATATTTGCAGTGTAGAATCCATGAGTGTTATATATAAACTGAAACTCCTCATATGTTATTGTATAGGACTT CAAAGGTGTGGCAAGAGTTGTAGACTGAGATGGACCAATTATCTTAGACCTGATATTAAGAGAGGGAAGTTCAGTTTGCA AGAAGAGCAAACCATCATTCAACTCCATGCCCTCTTAGGGAACAGGTTTGGTATATACATTCATTTCTTAGATTTTCTTG AATTACAATGTGAACACCTATGTGTGTTTGTGAGTGTATATCTCCTATACAATTTTGTTCCACTTTTTTTTTTGAATTTT AAATGACAAGAATTATGACACCTCATTTCAACTTGATATTTTGTATTTTCAGCACTTAAAATATAAATCATTAAATTTTC TGTGTGGTAGCAATTATTTCTTTTCTTTTCCAATTCCCTTCCAGTGCAGTGTGTCTTAAATGCAATGTCACCTCAATTTC TTCCCCCAATTCCAATCTATCTCCAACAAATAATTTGAATTGTGCTTCTGCCATTTTCATTACACCATTTACTTCCCTCC CTGACATCCAAGTTCACTCAAGGTGAATCTTTAATTGCAAAAGGATATATTATTGTCTATCTCCTGGTTCTACCCAAAGC AATAAAAAGAAATGGCCAATGCATGTGATTTCTAATGCCTTAAGACATTACAGAAATTAACTATGAATTTTTCATCTAGC TAGGGTTTGCATTGACATTTTATGTTGTGTTAACACAATTATTAAAATAAAATTCACATAAGATAATCCTAATCCGTGTT GTGTGTCGTACTCAGGTGGTCAGCTATAGCCACACACTTACCAAAGAGAACAGACAACGAGATCAAGAACTATTGGAACA CACATCTCAAGAAAAGGTTAACTAAAATGGGAATTGATCCGGTGACCCACAAGCCCAAGAATGACGCACTTCTCTCCAGC GACGGCCAGTCCAAAACCGCCGCTAACCTCTCCCACATGGCTCAGTGGGAGAGTGCTCGCCTTGAAGCAGAAGCAAGACT TGTTAGGGAATCAAAACTTCGTTCACATTCGCTCCAAAACCACCACCTTGGAAGTTCTCATCATCATGTTTTTGCATCTT CATCTTCTGCTTCAACTAATTCAGCCCCAATCCCAAACAACACCAACAAATTAGAAGCACCACCACTGCCGCCGTCGCAG CCGCAATTAACATCATCAACATCTTTTCCCTCATCATCATCATCACGTTCCCTTGAGGCCATTAAGTCTTGGAACAATGG AGGGTGGTTATTAAAAGCTAACAACAATGAAGGAAATGGTGGCACTAATATTAATGACCTTGAGTCTCCTACCTCAACCC TATCTTTCTCTGAGAATAACAATGTGCAACCAATCATGACTGTTGGATCAGCAACAGAAAACAATAGCACTGCAGTGGCT ATGATTGAGTTTGTGGGCACTAATTCAGGTTCTTCTGAGACAGGAGGAGGAGTTGTGAAAGAAGAAGGTGAGCAGTGGAA AGGTTATCATGAGAGTTCAATGACTTTCACTTCTGGATTTCATGAGTTCATGGAAGGTGTTGTTGGAGATGATGTTGTTG AAGAAGGGTTCACCAATCTTCTACTTAAAACAAACTCCGATGACTCGGAAGGCGGCGGAGAATCTAACAATGGTGGTCGT GGGAGTGGCAGTGATTTCTATGAAGCTGATAACAATAACTACTGGAGCAGCATTCTTAATTTAGTGAACTCTTCACCATC AGATTCTCCAATGTTCTGATCAGAGCAATTAAATCTTGTGTAAGTATGGACATGGTGTCTATAGAGTCTAGACACAACTA ATTGAAAATTCAAGATGCATTAAGAAAAAAATCTTCAGATTATTTTAATGTTATCTTGAATTTTTTAATTAGTGTGACAA CTAGACACTTCACTTGTACAAGAACTGTTTATGCCATGGTTAGCTAGTGAGTGTGAGTGATCATGATATATGTATTTATA TAGGATAGTTCTCAAATTCAAACTGCAGTCAAAGGCTATTGATTTTATTTCCCATTGCCATAATAAGCGAACTGCTCAGA TAGACTATGTTGAATTTCCATAGTGTTTTTAACAGAGACTTTGGTTGCTTCCACCATCAAATGTTGATATCGATTTGTTT GGATTTGACTTGATTAGCTTCTATGTCTAAAGTCTGTTTTTCTTTTTATGAGCTGGAGACATGTTTCTTGACAGTAGATA GTGTGTGAAAGAAGACAAG
CDS sequence (LotjaGi2g1v0260600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGATCACAATGTTGCGACAAGGTTGGTTTAAAGAAAGGACCGTGGACTCCAGAGGAAGATCAGAAGCTTTTAGC TTACATTGAAGAGCATGGCCATGGAAGCTGGCGTGCTTTGCCTGCAAAAGCTGGACTTCAAAGGTGTGGCAAGAGTTGTA GACTGAGATGGACCAATTATCTTAGACCTGATATTAAGAGAGGGAAGTTCAGTTTGCAAGAAGAGCAAACCATCATTCAA CTCCATGCCCTCTTAGGGAACAGGTGGTCAGCTATAGCCACACACTTACCAAAGAGAACAGACAACGAGATCAAGAACTA TTGGAACACACATCTCAAGAAAAGGTTAACTAAAATGGGAATTGATCCGGTGACCCACAAGCCCAAGAATGACGCACTTC TCTCCAGCGACGGCCAGTCCAAAACCGCCGCTAACCTCTCCCACATGGCTCAGTGGGAGAGTGCTCGCCTTGAAGCAGAA GCAAGACTTGTTAGGGAATCAAAACTTCGTTCACATTCGCTCCAAAACCACCACCTTGGAAGTTCTCATCATCATGTTTT TGCATCTTCATCTTCTGCTTCAACTAATTCAGCCCCAATCCCAAACAACACCAACAAATTAGAAGCACCACCACTGCCGC CGTCGCAGCCGCAATTAACATCATCAACATCTTTTCCCTCATCATCATCATCACGTTCCCTTGAGGCCATTAAGTCTTGG AACAATGGAGGGTGGTTATTAAAAGCTAACAACAATGAAGGAAATGGTGGCACTAATATTAATGACCTTGAGTCTCCTAC CTCAACCCTATCTTTCTCTGAGAATAACAATGTGCAACCAATCATGACTGTTGGATCAGCAACAGAAAACAATAGCACTG CAGTGGCTATGATTGAGTTTGTGGGCACTAATTCAGGTTCTTCTGAGACAGGAGGAGGAGTTGTGAAAGAAGAAGGTGAG CAGTGGAAAGGTTATCATGAGAGTTCAATGACTTTCACTTCTGGATTTCATGAGTTCATGGAAGGTGTTGTTGGAGATGA TGTTGTTGAAGAAGGGTTCACCAATCTTCTACTTAAAACAAACTCCGATGACTCGGAAGGCGGCGGAGAATCTAACAATG GTGGTCGTGGGAGTGGCAGTGATTTCTATGAAGCTGATAACAATAACTACTGGAGCAGCATTCTTAATTTAGTGAACTCT TCACCATCAGATTCTCCAATGTTCTGA
Protein sequence (LotjaGi2g1v0260600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRSQCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQ LHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSDGQSKTAANLSHMAQWESARLEAE ARLVRESKLRSHSLQNHHLGSSHHHVFASSSSASTNSAPIPNNTNKLEAPPLPPSQPQLTSSTSFPSSSSSRSLEAIKSW NNGGWLLKANNNEGNGGTNINDLESPTSTLSFSENNNVQPIMTVGSATENNSTAVAMIEFVGTNSGSSETGGGVVKEEGE QWKGYHESSMTFTSGFHEFMEGVVGDDVVEEGFTNLLLKTNSDDSEGGGESNNGGRGSGSDFYEADNNNYWSSILNLVNS SPSDSPMF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 325 | 325 | 6.9E-123 | ||
| PANTHER | 1 | 325 | 325 | 6.9E-123 | – | |
| ProSiteProfiles | 9 | 61 | 53 | 17.914 | ||
| SUPERFAMILY | 11 | 108 | 98 | 1.46E-30 | ||
| Gene3D | 11 | 67 | 57 | 4.2E-20 | – | |
| SMART | 13 | 63 | 51 | 2.6E-14 | ||
| Pfam | 14 | 61 | 48 | 1.2E-15 | ||
| CDD | 16 | 61 | 46 | 1.00844E-11 | ||
| ProSiteProfiles | 62 | 116 | 55 | 25.891 | ||
| SMART | 66 | 114 | 49 | 1.2E-16 | ||
| Pfam | 67 | 112 | 46 | 5.0E-15 | ||
| Gene3D | 68 | 140 | 73 | 5.8E-20 | – | |
| CDD | 69 | 112 | 44 | 9.79257E-12 | ||
| MobiDBLite | 121 | 147 | 27 | - | – | |
| MobiDBLite | 132 | 147 | 16 | - | – | |
| MobiDBLite | 169 | 230 | 62 | - | – | |
| MobiDBLite | 174 | 204 | 31 | - | – | |
| MobiDBLite | 359 | 382 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0260600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…