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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0261100 |
| Transcript ID | LotjaGi2g1v0261100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB transcription factor; TAIR: AT1G66370.1 myb domain protein 113; Swiss-Prot: sp|Q9FNV9|MY113_ARATH Transcription factor MYB113; TrEMBL-Plants: tr|K7MW48|K7MW48_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0261100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72967671..72971510) extracted from Lotus japonicus Gifu genome v1.2.
CAGTAGTGCAATTAAAACATCTTTATACTAATTGTAACGTACTTATGGAAGGAGTAGGAGGATCCTTAGGTGTGAGAAAA GGAGCTTGGAGTAAAGTGGAAGATGATCTTCTAACGGCTTGTGTACTTAAATATGGGGAAGGAAAATGGCACCTTGTACC CTCAAGAGCAGGTATGTACTACTAGTAATTAACATTAGTTTATTGCTTTTGTCATACCAATTAATGAGCAACCATTTATT GTAGTATAAGTTAATTAATTAGCAGGTTATAGGTTTTAAATTGCAGTGCACTTATATTAAGCTTCTCTTCAATGGCAACC ATCATATATATCACATATGTCTCTTCTCTTTCTAAATGTCTGTTAATGATTGTGCATGTCTTTGTTATATATAAACGGAG TCATAAAAATAAATTACTGCCACTAACTGCAATTTAAAATGGTGATTTAGTCCTACCCTAATTGATCAATAAAATTATTT AAAAGAAGTTTAAAATTTCTTACTCACTTATCTTAATATTGCCTCTGACATTAAAAACTATACTGGTTAATGTTTTTTTA AATTTTGCAGGGTTGAACAGATGCCGCAAAAGCTGTAGATTGCGGTGGTTGAACTACCTGAAGCCGAGTATTAAGCGGGG AGAGTTCAGTGAGGATGAAGTTGACATGATGAAAAGATTGCACAGACTTTTGGGAAACAGGTTGCTTTCACACATACACA TCATATGCATAGACACTTATGATTAGTTTTTTTGTCTTTTTGACATGACATGTTAATAATTAAAGAACATTTAGTCATGC TATTTTAAGTTAATGGAATTAAGATCATTTTTTTCCACTTATTTTTTTTTGGATAAGCCATTTTTTTTTCACTTAATAAA ATGCATTAATAAGAGCGTCGGAGTAGATGTCAATACACCATTCTCGATCAAGGAAACAACCTAAACTCCGTTGGAACTTT TCCAATCTAAACAAAATCACCATATGAAAAAGAAAATTTCGTCAAATCATCAGCCAAAAAATTATCAGTTCTACGAATAA AAGATTAATCAACTAAATTAAAAGATGAAAAACTAAATCATGACAGTCGTGAATAATAGCAGATAAATAGGAATGGTCTG CGGAGGGTCTCTTTCAAACCTCAAACTGGAGCAAACAATTCGTTTCAAAATAGACTCGACGGAAACAAAGATAAGAATAC AGAGAAAAAACCTAACTGAAACACATAGCCTCAGCAAGTACATGAGATAAAACTGCAAGGGAAGTTGAAGTCTCAGCCGC AATTGGACCTCACCATGTATTTACAACTACTCATTTAGTATATATTATTTATTATTTATAATATGATTTTTATGTGTTAA AATTAATTTACAAAAAAATTCTTTAAATTGATGAACTATATTTTTCTTACGACAAATTAAAATATTTCTTTTTCACTATT TTTTTAATGTCTTTAACTCTTTTATATATATATATATATATATATATATATATATAGGGAGCATATCAGGTGAGAGGAGT GGTTTATAATGAGAGATGAGAGGAATAATTAATAACCCTTGGATCAAAATAAAGGGTTCAGATTAATTCTCACTTTTAAG TTCTCACGTGACCACCTCTCTCTTCAATTCATTCTTTTCGCACATACGCACACCATCGTTCGTTCAATTCATATTTACCT TCCTCTACCAGTTTGAAAACAGCCCTTGCATAGCATCCTTCTCTTGTTAGACTCCTTCTTCTAGCCTTAAGCTTAACTGT GGATTCACTTTGCACCACACTTTCTGTCTTATTTGGTAGGTAACCTTCTTTTGAGCAAACAAAATACTTCCAGCGCTTCA CGCCATTTTTGTCTTTAGTTTCAGATGAGCAGCGAACACTAAATCCAGCATTATGTGCATACCTTTTGTAAAACTCTTCA CCTTCTTCTAATGTATTTAATTGTTGTCCAACCTTCGGCTTTAATTCTTCAGCACAAGTTGGCACCCATTCGTTTTCCTA AAAAACATTACCATATAAGAAAAAATAACTTAATTACACAAAACTGAATATAGTAACATAGTGTAGAGAGCTTTGTACCT CTTCAATTGAGCTGTTGAGGGCAGAATCCATCCTTAATGGGGATACAATTCTACTCATTCCTGCATATAGCAATGTCGCC CAATTAGCTCATTGTATTTACCAATTAAAATTGAGAAAATAATAACTAATTCAGAACAAGTGGGATGAGATTATTCAAAA AGGGCATATACGTGGGATGCATTACAAAGATAAGAGTCAATTGAAATATATAAAATGCATACAGTGGGAACATTTTCAGC CAAGAAACAGTCAATTTTGGAAGCATTAATGTAACTTAATACCCTTTTACTCAGATTTTGCAATGAAAAGCAATGAAGTT CAGTGGAAGATGTTAAAAAATCGAAAGGGGGAAACCTGGGAATAAAACTTGATCATCACTCGAAAGGACGGTGGAGCGAA ATAGAGCCTTGGTCCTCCGAAACGCTGCGAGGGTGGAGTGGGCAGAAACGTCGTCGTGGCCGAGGACGGAAGGAGACGTT GCCCGACGGCGAGAGGATGAAGTGAAATCGTCGGAGAAGAAGGCAGTGACGGGTCGTGTAATTCTGCCCGGCGACGGAGA AGATGAAGTGAACTCACGAGTCGTGTTTCTGGGGAGAGAACGAACGATGGTGTGCGTATGTGTGAAAAGAATGAATTGAA GAGAGAGGTGGTCACGTGAGAACTTAAAAGTGAGAATTAATCTGAACCCTTTATTTTGATCCAAGGGTTATTAATTATTC CTCTCATCTCTCATTATAAATCACTCCTCTCACCTGATATGCTCCCTATATACATATATATATATATATATATATACTAA ATTTACAACGAATAAATTGATTCGAGTTGTATTACTTAATTAATTCCCCTTAAATAAAGCTTTAAATTCGAATATTGTTT TATATAGAAAAAACTTTCGTTAAAAAAGTTAGTTTCACACATATGTACATGTGTAAGACCCAAACATTATTGTGTCACCG GTTAAATATGATGTAAATTTGTTAGATAAAAAAAGAATGATATATACTGTAGCAATCTTTGATTAAGAATAGTTTGTCCT GCATGTATAGATGGTCCCTGATTGCTGGAAGACTTCCCGGTAGAACTGCTAATGATGTGAAGAACTTCTGGAACACCAAC GTTCGCAAGTCGAAGGTATCATCTCGTAAGGAAGAGATTCAATATGCAGAGCCAAAAGAAACAGTGAAACCCCACTCAGT GATTAAGCCTCAGACTCGAACTTTGTCAAAACCTTCACCCTGCAGCTTGAGGAAGTGGTTCCCAAGCAAAGATCAAGATG GGACCACACAGTGCCATATAACTCAACCATGTGCAGCTTCAACAGAGTGCAATGATAATCATAATAATAATGCTAAAGAT AAGTGGTTGGGAACTGCAATTGGAGATAATGGAAGCAACCTGGAGAATGATAAATACTTCTCAGGAAACCAAGACTGGAC GCTCATGAAAGACTTTAACTTGGATGAGGAGCTTCCTACCGACTTTCTTATTGAAGATCAAAGTTGGAGTGATTTTTTTC TTGATATCAATTTGTGGGATCTATGAGTTTAAAACATGCATGTAGTTTGGGAAAATAAACGTGTGGAAGTATGCTAGTAA TGAAGATTGTGAGTGTGCTAGTAGTTTGGAAGAACTTATTTGAATTTATTTTATAGCATAAGCGTTTATGCAAATGTTTG AGAAAACTTATGTAAAAAGCTTATGTTCGTCACCAATAAGCTGTTATGAACTTAATTAGTTTAATTTTATAAGCTTTTAG
CDS sequence (LotjaGi2g1v0261100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGAGTAGGAGGATCCTTAGGTGTGAGAAAAGGAGCTTGGAGTAAAGTGGAAGATGATCTTCTAACGGCTTGTGT ACTTAAATATGGGGAAGGAAAATGGCACCTTGTACCCTCAAGAGCAGGGTTGAACAGATGCCGCAAAAGCTGTAGATTGC GGTGGTTGAACTACCTGAAGCCGAGTATTAAGCGGGGAGAGTTCAGTGAGGATGAAGTTGACATGATGAAAAGATTGCAC AGACTTTTGGGAAACAGATGGTCCCTGATTGCTGGAAGACTTCCCGGTAGAACTGCTAATGATGTGAAGAACTTCTGGAA CACCAACGTTCGCAAGTCGAAGGTATCATCTCGTAAGGAAGAGATTCAATATGCAGAGCCAAAAGAAACAGTGAAACCCC ACTCAGTGATTAAGCCTCAGACTCGAACTTTGTCAAAACCTTCACCCTGCAGCTTGAGGAAGTGGTTCCCAAGCAAAGAT CAAGATGGGACCACACAGTGCCATATAACTCAACCATGTGCAGCTTCAACAGAGTGCAATGATAATCATAATAATAATGC TAAAGATAAGTGGTTGGGAACTGCAATTGGAGATAATGGAAGCAACCTGGAGAATGATAAATACTTCTCAGGAAACCAAG ACTGGACGCTCATGAAAGACTTTAACTTGGATGAGGAGCTTCCTACCGACTTTCTTATTGAAGATCAAAGTTGGAGTGAT TTTTTTCTTGATATCAATTTGTGGGATCTATGA
Protein sequence (LotjaGi2g1v0261100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGVGGSLGVRKGAWSKVEDDLLTACVLKYGEGKWHLVPSRAGLNRCRKSCRLRWLNYLKPSIKRGEFSEDEVDMMKRLH RLLGNRWSLIAGRLPGRTANDVKNFWNTNVRKSKVSSRKEEIQYAEPKETVKPHSVIKPQTRTLSKPSPCSLRKWFPSKD QDGTTQCHITQPCAASTECNDNHNNNAKDKWLGTAIGDNGSNLENDKYFSGNQDWTLMKDFNLDEELPTDFLIEDQSWSD FFLDINLWDL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 7 | 59 | 53 | 14.548 | ||
| PANTHER | 8 | 186 | 179 | 1.3E-65 | ||
| PANTHER | 8 | 186 | 179 | 1.3E-65 | – | |
| SUPERFAMILY | 9 | 106 | 98 | 3.44E-26 | ||
| Gene3D | 11 | 65 | 55 | 2.4E-16 | – | |
| SMART | 11 | 61 | 51 | 1.3E-13 | ||
| Pfam | 12 | 59 | 48 | 4.4E-14 | ||
| CDD | 14 | 59 | 46 | 5.97823E-9 | ||
| ProSiteProfiles | 60 | 114 | 55 | 21.607 | ||
| SMART | 64 | 112 | 49 | 2.8E-13 | ||
| Pfam | 65 | 108 | 44 | 1.8E-11 | ||
| Gene3D | 66 | 139 | 74 | 4.8E-15 | – | |
| CDD | 67 | 110 | 44 | 5.68537E-9 | ||
| MobiDBLite | 118 | 135 | 18 | - | – | |
| MobiDBLite | 118 | 145 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0261100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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