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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0261300 |
| Transcript ID | LotjaGi2g1v0261300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane emp24 domain-containing protein; TAIR: AT1G26690.1 emp24/gp25L/p24 family/GOLD family protein; Swiss-Prot: sp|Q9LQY3|P24D9_ARATH Transmembrane emp24 domain-containing protein p24delta9; TrEMBL-Plants: tr|I3RZZ7|I3RZZ7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0261300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:73001956..73005187) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTAAAACAATATTTTATGGTAGAAAATTGTTTTTCAACATAATTTAGTTTCTTTTTACTGTTGAGTAACTGCTTCTC CATTGCCGTTTTGTATTTCCCCCTTGTTTGTGAATTCGAACCCTAATCCGATCCCAAATTGGAAGCCTCGCGAATTCCCA TCGTCGCAATGCTCAATTCAATTCTTCTTCTTGCTGCATTTCTTACCCTCGCATTGACTTGTAGCCTCGCGAATTCACTG AGATTCGAGCTGAAATCGGGTCACAGCAAGTGCATAACAGAGGACATTAAGAGCAATGCCATGAGCGTGGGGAAGTACAG TATCGTTAATCCCAATGAAGGGTACCCAATTCCTGATACTCACAAGATCACGGTCAAGGTAACAAGCTCGTGATTCTGTC CCAAACAAACCCAATTGTGTGTGTGTGCTAAATTTGAGTGCTTTTTGCCCTTTCCTAATTTGACTGACCATGAAGTATGA ATTAACCTTAACAACTAAAAAAAGCAGTTTTCGAAGTTTATAGTAGGAATTAGGAAATGCATGTAAAAAAATTAAATCTT TATATGATATAATATTGAATCTCAAATGAGGCAGCTGTACAATGTTTCCTAGGAGCATTGGTTAGTGGAACCTTATGATT TATTTTGAGTTGTAAGGTTTCTTAATTTGGAATGCTTTATAGTTTTTATGATAATGTGATCCTGTGGCTTGTCTAGAGGG TTGACTTTGTTATGATGTGTGGTTGCAAGGTGAGTTCTCCTTATGGAAACAGTTACCACAATGGGGATCAGGTGGATTCT GGTGATTTTGCATTTACTGCAGCTGAGGACGGCGACTACACAGCTTGCTTTTGGATACCGGATAGTAGGGCCGGTGTCTC AATTGTGACCATTGAATTCGATTGGAGAACTGGGGTTGCTGCCAAAGACTGGTCCAAGGTTGCCAAGAAAGGGCAGGTTG AAGTAAGTAGCATTCTGTTGTTCCTTGACTTGTGATTTATGTGTGTCAATAGGTATGCGGTAATTTTTGTTATTGTTGCA TTTATTTTTGTTCCTTGACTTGGGATTTATATGTGTGGGCCAATTGGTATGTGGTAATTTTTGTTATAGTTGTTGCATTT TAACTCTCTATGTTGCCAATCCCAAGCCTTAATATCGAGGAGGGCTGTATTAGAAAGCTTGTTGCCAAAGGAAAACTTTG TTGAATCTGTATTACATTGATCAGTGATACACTGGTGCTAAACTTTGCGAAAATACTATTCAAAAGCATTGCTATCTAAT TGGATTTATTGAAAATTTTGATTTTTGATAGAGCTGAATAGGTTTATTTTGAACCATGTTGGTAAACCCACCTGGTGGAT CCATTTGTAACTCCTTAGACATATTTGCCTGAATGATATTTCGAATATTACACACAATGCTCAAATATGTTGGTGTGCTC TTCGGACACCTACAATATTGATAAACTAATGCTATGCTGGTGTCCTCTCATTCTATCTGGAAAGCTCTGATACAAAGCAG CACTGTCTTGCTATGATTGGCTACATGGTGAAGATGTGAATAATATTCATATAGGGAATAGTATCACAATGTTCTTGGTT TCAATTACTTCTCTCCGGAAATCCTTGACAATTTAACTTTTATATTAAAAAAAAATCATCTGTGATGAATTGCACAAGAT CTTTCTATAAATTTAAGTATTTTGGTATTTAATATGTTGTTACTTCCCATTGTCTAGGTAATGGAATTTGAGTTGAAGAA GCTATATGATACAGTTGCATCCATCCATGAAGAGATGTTTTACCTTCGCGAAAGGTATAATTGTCATGAGACTCTGATTT CTGCCAACAAGTGTCCTGATACTGTTTAGTAATATTATGGTTGACCATGTATCTTTGATGGAAAAAGTATTTTGCTGAGT TCATTCAAAATTTCTTTAAATGGAAGATAGAAGAAATATATTGTCGTTGGGTCATAAGAGATTGCAATCATTTGCTGAGA GGGATCTCTTGGGCACAAGCACAACTAAGTGCATATTTCTCGTCGTTTTTCCATATACATATGCCTTTTGCATTGCATCA AAGTTTTACCATCCAAGAAGAGTCTATTATTCATTTAATTTTTTCTCTCTCCCCCCTGATATAGATTGATGGATGAAATC TGGGTCTCCATAACAAATCCTAAGGCCTAACCAATAAAATAGAAAAGGGAACAGTTCTAGATAATTCATGACATTACTTT TTTTGTCCCGGTTTAGCAGATTATTATGTCTCATTTACCATATCCTCCTTTCTAATAATTTAACGTGTTGGAGTGGATCA GAAATTTGTTGTTATATCACCAACATACTTATTTCCTGTGCTCCACATAATGAACCTCTTTGCTTACATGTTCTTTTGTA TGGTTCATTAGACTGATAAGTGATAAGCCAACTAAGGAAGTAAGTACTTTTATATATATGTCAAGTTTTTGAATGTCTGG CTTTGGCCTCACATGGTCATGCACTCTATTGGAGCATAATAATTTTTTGTTCATTCTGATGATGCTTTTTACCAAAATTT GATGATCTTTTTATTCATGTGGCTGATATAGGGAGGAAGAGATGCAAAATCTTAACAAAGCAACTAACAGCAAGATGTTC ACCTTCGGTTTTCTTTCAATTGTGGTCTGCTTGTCCGTTGCTGGTATGCAACTATGGCATTTGAAGACATTCTTTGAGAG GAAGAAGCTCCTCTAAGTTCCTCCTCAAATTTTTCTTTTTGTCTTATTTTTTTATCATCTGTTGCCCGTTCCTTATGTAT TCTAATATATGATTAGTTCATCTTTCGTGTATACTTTATGATAGTTAGAAATTGCTACCGCATCTTAAGTCATTGAAATG GTAGATCTTAGAAAGAGTTCATGGAACCGGCCTTGTGCAAATGCAAGGTAATACTGCCTACAATAGATCCATAATGAGAT TGACCCTTATTTGGAACGAGACCCTTTGTAGCTCCAGCTACATTTCTCTAGGTCCTTTGATTTGTAATTTGAATAGTTAT CTTTCAAATTCTGAGCACTGATATTATGACTTAATGTTTTGGTAGTTGATATGAGGACTTCCTTCAATGTACAATCGGTA CATACAATTGGTAAATATCTTCTCTTTATTTTTTTAGTCTGAAACGTGAGGAACAGATAGAGGGAAATGATCAAAAGAAT GCTGAATGTACTTCTAATGCAAGTGGCAATTT
CDS sequence (LotjaGi2g1v0261300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCAATTCAATTCTTCTTCTTGCTGCATTTCTTACCCTCGCATTGACTTGTAGCCTCGCGAATTCACTGAGATTCGA GCTGAAATCGGGTCACAGCAAGTGCATAACAGAGGACATTAAGAGCAATGCCATGAGCGTGGGGAAGTACAGTATCGTTA ATCCCAATGAAGGGTACCCAATTCCTGATACTCACAAGATCACGGTCAAGGTGAGTTCTCCTTATGGAAACAGTTACCAC AATGGGGATCAGGTGGATTCTGGTGATTTTGCATTTACTGCAGCTGAGGACGGCGACTACACAGCTTGCTTTTGGATACC GGATAGTAGGGCCGGTGTCTCAATTGTGACCATTGAATTCGATTGGAGAACTGGGGTTGCTGCCAAAGACTGGTCCAAGG TTGCCAAGAAAGGGCAGGTTGAAGTAATGGAATTTGAGTTGAAGAAGCTATATGATACAGTTGCATCCATCCATGAAGAG ATGTTTTACCTTCGCGAAAGGGAGGAAGAGATGCAAAATCTTAACAAAGCAACTAACAGCAAGATGTTCACCTTCGGTTT TCTTTCAATTGTGGTCTGCTTGTCCGTTGCTGGTATGCAACTATGGCATTTGAAGACATTCTTTGAGAGGAAGAAGCTCC TCTAA
Protein sequence (LotjaGi2g1v0261300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLNSILLLAAFLTLALTCSLANSLRFELKSGHSKCITEDIKSNAMSVGKYSIVNPNEGYPIPDTHKITVKVSSPYGNSYH NGDQVDSGDFAFTAAEDGDYTACFWIPDSRAGVSIVTIEFDWRTGVAAKDWSKVAKKGQVEVMEFELKKLYDTVASIHEE MFYLREREEEMQNLNKATNSKMFTFGFLSIVVCLSVAGMQLWHLKTFFERKKLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 21 | 21 | - | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| TMHMM | 4 | 26 | 23 | - | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| PANTHER | 7 | 214 | 208 | 1.9E-113 | ||
| PANTHER | 7 | 214 | 208 | 1.9E-113 | – | |
| Phobius | 17 | 21 | 5 | - | – | |
| Phobius | 22 | 181 | 160 | - | – | |
| SMART | 23 | 209 | 187 | 2.1E-57 | ||
| Pfam | 23 | 209 | 187 | 1.5E-51 | ||
| ProSiteProfiles | 33 | 149 | 117 | 13.406 | ||
| Phobius | 182 | 202 | 21 | - | – | |
| TMHMM | 182 | 204 | 23 | - | – | |
| Phobius | 203 | 214 | 12 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0261300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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