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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0267000 |
Transcript ID | LotjaGi2g1v0267000.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; TAIR: AT3G29760.3 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|O94336|YHM3_SCHPO Uncharacterized FCP1 homology domain-containing protein C1271.03c; TrEMBL-Plants: tr|K7MW97|K7MW97_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0267000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:73677838..73682682) extracted from Lotus japonicus Gifu genome v1.2.
CTGAAACTGAAACTGAACTCTCTTTCCCACTTTCTCTGCCTTAACTTCCTCATGTTCATGTTCTAATCCTGCCCAGGTAC CACATTCGCACTTTGCCTTACTTTACCTGTTTCATTATCTTTGTTTCTTTGATTACCAGTTGACAACTTGTTGTTAATCA ATCAATTCGCAATTAGTTTTATTTCCCCACCGTTGTTAGTTATAATTGTGTAGTAATTTAGAATCTTAGCCTTGCTAATT ACCATGCCTCATTAAGACTTGATAAATGCACAGATGAAAGCTTGGTATATGCAATGCTGTATAATTAGTTGGATAATTTT GTATAGAACGTGAGTGCAATCAATCAATGGCTGCATAAGTTTAGGAGATGAGATTTGGAAGATTCCAATATTTTTTTTTT CTGTTTTGACTGAGGGTTTTTTCATCTAGCAAATACCAATATGTATGTATTTATTGCAACGCCAAACTGTATTAAATTGC GCGTGTGCTTGCTAGATTGTTTCAATATATATGATTTTTTTTGTTTTGTCTGAGGGTTTTTTCATCTAGCAATATGTATA TTTTTATTGCAATGCCGAACTGTATTAAATTGCGCGTGTGCTTGCTAGATTGTTTCAATTTATTCTGTGACCTTATTTGA ATTTTGAATATTTCATGGCTATATCATTTTTGCAGGGTTCATTGTGTCAAATGTAGTGCAATGATATATAGGTTGGTGTG AGACCGGTTTATTGGGTCGATTGAGGGAACGATACAATGGATATCCATGCATTACAAAGCAGTAAAATAGTCTGTGACAT TCCATTGGAAGGTGTTAAAAATACACTGAATACTGAGTCAACTGTAGCAGATGAAAGAAAGAATAACAAGGAGTTTTCTT CTTATACTAATCAAATGAAGATGGTACCTACTTCTGTCATAAACGAAGAGCTTAGTTCAGAAACTTTGGGAATTTCTTTG GTTAGAACACAAGTTGGAAGCTTGAAGAAAAAACTTCTTGTTCTTGATATAAATGGGTTGCTAGCGGACATAGTTTCTCC CCGTCCAAAGGACCATAAAGCTGATGCAACCATTGCAGGGCGAGCAAGTGAGTAAATATTGTGTTGTTCTTGTTCTACTT TTTAATTAATCATCCATACTTTACTAATTAGGTTGTATTTGATTTCAGTATTCAAGAGGCCCTTTTATCTTGAGTTTCTG AAGTTCTGCTTTGAGAAATTTGAAGTTGGTATATGGTCTTCAAGGACGAAGTACGACTTAACTAACTTCTTGTGTTCCTT TTCTCTGTCTCATTTCTGTTTTACAAAGATTAAAACTTCCCTCTTTTACTTCTTGGATCTTGTAGATTTTTAACAATGTG CTGTAGTATAAACTTGACTCCGGTTTTGGTGTTGTCATAGGAAAAATGTTCAACGAGTTATTGATTATTTGATGGGAGAC ATGAAAAACAAGTTGCTTTTCTGTTGGGTAAGCATTTGTTTAGCTTTTTGTCTCTGGTTCCTCATTGATTACTTGGTTTA TTAAATTTTGTATGAATATTACATATTTGTAGATGTGAGATTTTGGGCAACAATGTTAGTAATAGTAATGAGCGGCATTG AATTTTCATGTTGTATTAAGATTGCTTGCTGATCTTGCCATTCGTGGAAATTTAGTTTAGATATTAATTTTATATCTTCT TCCTTTTCTTCTCGTGTCCTCACTTTATGCAAAGTCGCAAACCATGAATTACACCAGTTCACATTTCTGCAGGTCTACTA CAGTCGTATCATGAGATCCATGTATATATTATTGTTTAACCTACTTTTGTTAGAGGTAAACCCTTTTCTGCTTCTGATTC TATATTTTGTTGACTTCTTCAGGATCTTTCTCATTGTACCGAAACAAGTTTCAGAACTCTTGAAAACAAGCACAAGCCTT TGGTTTTTAAGGATTTGAGGAAGCTTTGGGAGAAGCATGATCCTGATCTTCCATGGGAAAAGGGATATTATAATGAATTA AATACATTGCTATTGGATGATTCTCCATATAAAGCATTGCTCAATCCTGTAAATAAACTAACTTTTTTTGTTTCTTTTCG TGTTTAAGCAGGCTTTCTTCAGCAATACCATTTCCTAACCTTTTTTTTGAATGTTTTGATCAATTATTTTAGCCAAACAC CTCAGTCTTTCCTCATTCATTCACTTATCAGAATAAAAGCGACAATTCATTAGGTAAAAACATTTGTACATAACCACTAG TATCTTAATTAATTGAATGACAAGAATATGCTCAAGACTTGGCTATATCCAGCTAATGGATTATGGCACGCTTGGCTGAT TCCAATTTCTTTTCTTATACATTCATTTATTTACTTGACATATATTTTCTTTAGCTCTCTTTTGGGTTGACTCTTGTAGT GATCCTGGAAAAGGAAGGCCAGAAAGAAATTTCTTTGATGGTTTTACATGGCTTACTTCAAAACATAACTAAGTGGTCAT TTCTGCATTCTTATTAAACTTCCTTTTAGTGTGAGACTAAAGCCTTTTTGGTTTACTGTTAGGAAGTATGATAACAGTAA AATAACACATCCCGATGCACTTTTTGTTGAAGTAACAAGTTGTTACTTCAATAAAAAGCGCACCGGAATGTGTTATTTTC CCGTTTTCATACTTTCTAAGGTAAACCAAACAAACTCTTTTGCGCAGTTTATAGTTATGCAACATCAAAGATACATTGAA TGAACTGTAATTATTTTTGGGTTGCTGTTAAAGTGCCATATCATCTTGTAGTGGCTACCTTTATGCTTTTTAAATCTGAT TGAGTATGTTAGATCAATAATGTAACTATGATTCATGACAGCTGCTGGAGGCGATCTGCGAGAATATCTACATCGATTGG CAAATGCTGAAGATATGCCCAAGTACATTGAGGAACACCCATTTGGCCAAGACGGTATCACCGAAAAAAGTGAATCATGG AACTTCTATCTCCAGGTTATTAGTAGCCTTTTAGACTGTCAACCTGAAGATAATCCATCTGTCAATAAACATTCTGTCTG CTGAATGAGTCAGAGCAGTTTTCAAAGAGAAATTGAGATATAAGAGGCTTTTCATCTGTTTTTTTTTTCTTATCCGTGAT ACAACAATTGTTTTATAGACTTCTTGGATGCACAACAAAGAGCACTTGTTGGAGCTTATTCAATACTTTTTCTAGTAGAT AAGCTATAGTAAGTGCTCTTTAGTCTGTATCCAGATGAGATCTTAGTCCTTAAACATAATTTTGTTGAATTTGAATGATG TTTTTATTAGGAAATTTATCATTTTTCATATTTATACTATGGATGTTTAGGATTCCTTTAGGAAGTATTAATGGCATTTA TGAACTGCTTACGATTATCGATTGCTTAGCTTTCAGATGTAGGGCTTGGTATTCTTAAATAATTTTCTCACACTATACTC AATGTTATCAGTTAGTTAGGATTGATTTTCAGTATTTCTTTTTAAACCTTTTTTTAAAGAAAACCTTTTAGATTTGTTGC CTCTGATGCATTTTTGTTCTTAAGTAACTTGGTCTGTTGTATTACTGCATCAGAGCAAACTACCTAAGCTAGGATTAGCC AATTTGGTGAGTTACAGACCTCATGACACAAGAATGTGAGAGCAATTTTTTGCTTTTGGCCGAATGACTTGTTTTTTGGG GTTTAATACACGTGTCATCTTCCGGAGGCAATTGCGTTTAAACCGAAAACATTCACAACTTGATAAGAAACAACTAGACT GGAGGAACTGAATTTTCTAATTTATAATGGACATTTTACAGTCAATTGGAAACATTTCTGGAGAGTGGAAACTGGGACAA GGAGACAAGTTTGTACAGCTAGTGTAATAATCATAACTAAGACTTTATGTGTCTATATTCTGATAATAGACTGAGTCAAC AAAATTTTGTATGTGAACAACTTTGTGCAAGTAGCTTGCTGCCCTGCTTGGTTTCTTGGTTATTTTCTGTTATAACCTAT ATTAAAATCATTTTTTTGGAAGGTCTTGTTTAACACAACATTATAACTTTCTATTAGTGAGTATTTGCAGTTAAACCATT GCTATATCTATTCTTTTAAACTAAAAAATTGTAAAAATGAAATTGACTTAGCTTGTACATTTGTTTGTGTTTCAAGTTTG AAAACTCATGGATGAAGTGCATGTTGAGTCAAGCTGTAACTTCACTGATGGCAAGAAAGTTAGGATGAAGTTTCTTCCAC TCTCCAAAATGGCAAGAGATGTGTGTAAGAGAGTGATAGAAAGAGTGAAAAAAGAAGATGCACTTGATGACCTTTGAGCA TGCCATGGTACCTTACTACCTCATTATTCTCCTCTGACTGCTCTACCAAGGACCCATCTTTAGTAATTTGGTTCTTTGCC CATACCAAAATATTCTGTTTTGGTCTAAAATGATTAATTCAGCACTTCTCTGTAACATATGATAATGACACATTATAGCA ATCATCCACATAGCAATTATATTGGTCATATAGAACCATGGATGCTCTTTGAGGCTATAGCTGACAATTGACATCCACTA GTTCTATAGACCGATTCCTACGTGAGTGATTTAGAGATGCATAATTAAATTACTTGGTTTCATCCTGCAATAAGCATGGA GTGTTTCACCCTGTGTAATTTTTTAAAAAATTGAGCAGAGAGTACCTCCGATCCACATGTGGTGGTGTTAGGTCGAGAAC ACGGTGGTTTGATGTACGTCCATGGTAGTGCACGGCGGGAGATGTACTTGCACAAAATACCCGAACGTTTAAATAAGCTT AAGATGATAGAGAGAAATTTAAAGTCATAGAAAAGTATATAATAA
CDS sequence (LotjaGi2g1v0267000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATATCCATGCATTACAAAGCAGTAAAATAGTCTGTGACATTCCATTGGAAGGTGTTAAAAATACACTGAATACTGA GTCAACTGTAGCAGATGAAAGAAAGAATAACAAGGAGTTTTCTTCTTATACTAATCAAATGAAGATGGTACCTACTTCTG TCATAAACGAAGAGCTTAGTTCAGAAACTTTGGGAATTTCTTTGGTTAGAACACAAGTTGGAAGCTTGAAGAAAAAACTT CTTGTTCTTGATATAAATGGGTTGCTAGCGGACATAGTTTCTCCCCGTCCAAAGGACCATAAAGCTGATGCAACCATTGC AGGGCGAGCAATATTCAAGAGGCCCTTTTATCTTGAGTTTCTGAAGTTCTGCTTTGAGAAATTTGAAGTTGGTATATGGT CTTCAAGGACGAAGAAAAATGTTCAACGAGTTATTGATTATTTGATGGGAGACATGAAAAACAAGTTGCTTTTCTGTTGG GATCTTTCTCATTGTACCGAAACAAGTTTCAGAACTCTTGAAAACAAGCACAAGCCTTTGGTTTTTAAGGATTTGAGGAA GCTTTGGGAGAAGCATGATCCTGATCTTCCATGGGAAAAGGGATATTATAATGAATTAAATACATTGCTATTGGATGATT CTCCATATAAAGCATTGCTCAATCCTCCAAACACCTCAGTCTTTCCTCATTCATTCACTTATCAGAATAAAAGCGACAAT TCATTAGCTGCTGGAGGCGATCTGCGAGAATATCTACATCGATTGGCAAATGCTGAAGATATGCCCAAGTACATTGAGGA ACACCCATTTGGCCAAGACGGTATCACCGAAAAAAGTGAATCATGGAACTTCTATCTCCAGTTTGAAAACTCATGGATGA AGTGCATGTTGAGTCAAGCTGTAACTTCACTGATGGCAAGAAAGTTAGGATGA
Protein sequence (LotjaGi2g1v0267000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDIHALQSSKIVCDIPLEGVKNTLNTESTVADERKNNKEFSSYTNQMKMVPTSVINEELSSETLGISLVRTQVGSLKKKL LVLDINGLLADIVSPRPKDHKADATIAGRAIFKRPFYLEFLKFCFEKFEVGIWSSRTKKNVQRVIDYLMGDMKNKLLFCW DLSHCTETSFRTLENKHKPLVFKDLRKLWEKHDPDLPWEKGYYNELNTLLLDDSPYKALLNPPNTSVFPHSFTYQNKSDN SLAAGGDLREYLHRLANAEDMPKYIEEHPFGQDGITEKSESWNFYLQFENSWMKCMLSQAVTSLMARKLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 19 | 270 | 252 | 3.8E-50 | ||
PANTHER | 21 | 293 | 273 | 3.9E-133 | – | |
PANTHER | 21 | 293 | 273 | 3.9E-133 | – | |
ProSiteProfiles | 74 | 255 | 182 | 26.562 | ||
SUPERFAMILY | 76 | 265 | 190 | 1.4E-23 | ||
SMART | 77 | 240 | 164 | 2.0E-7 | ||
Pfam | 79 | 261 | 183 | 1.1E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0267000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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