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LotjaGi2g1v0267000.2

Overview

Field Value
Gene ID LotjaGi2g1v0267000
Transcript ID LotjaGi2g1v0267000.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; TAIR: AT3G29760.3 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|O94336|YHM3_SCHPO Uncharacterized FCP1 homology domain-containing protein C1271.03c; TrEMBL-Plants: tr|K7MW97|K7MW97_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0267000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:73677885..73682780) extracted from Lotus japonicus Gifu genome v1.2.

CACAAACTCAAGAAAGAGTCCCCACATCCACATCACACCCCCACGTCGCCGGTTCTGACCAAACCAGACCAGCTTTTACT TGAGACGGTTAAACCAAACTGAAACTGAAACTGAACTCTCTTTCCCACTTTCTCTGCCTTAACTTCCTCATGTTCATGTT CTAATCCTGCCCAGGTACCACATTCGCACTTTGCCTTACTTTACCTGTTTCATTATCTTTGTTTCTTTGATTACCAGTTG ACAACTTGTTGTTAATCAATCAATTCGCAATTAGTTTTATTTCCCCACCGTTGTTAGTTATAATTGTGTAGTAATTTAGA ATCTTAGCCTTGCTAATTACCATGCCTCATTAAGACTTGATAAATGCACAGATGAAAGCTTGGTATATGCAATGCTGTAT AATTAGTTGGATAATTTTGTATAGAACGTGAGTGCAATCAATCAATGGCTGCATAAGTTTAGGAGATGAGATTTGGAAGA TTCCAATATTTTTTTTTTCTGTTTTGACTGAGGGTTTTTTCATCTAGCAAATACCAATATGTATGTATTTATTGCAACGC CAAACTGTATTAAATTGCGCGTGTGCTTGCTAGATTGTTTCAATATATATGATTTTTTTTGTTTTGTCTGAGGGTTTTTT CATCTAGCAATATGTATATTTTTATTGCAATGCCGAACTGTATTAAATTGCGCGTGTGCTTGCTAGATTGTTTCAATTTA TTCTGTGACCTTATTTGAATTTTGAATATTTCATGGCTATATCATTTTTGCAGGGTTCATTGTGTCAAATGTAGTGCAAT GATATATAGGTTGGTGTGAGACCGGTTTATTGGGTCGATTGAGGGAACGATACAATGGATATCCATGCATTACAAAGCAG TAAAATAGTCTGTGACATTCCATTGGAAGGTGTTAAAAATACACTGAATACTGAGTCAACTGTAGCAGATGAAAGAAAGA ATAACAAGGAGTTTTCTTCTTATACTAATCAAATGAAGATGGTACCTACTTCTGTCATAAACGAAGAGCTTAGTTCAGAA ACTTTGGGAATTTCTTTGGTTAGAACACAAGTTGGAAGCTTGAAGAAAAAACTTCTTGTTCTTGATATAAATGGGTTGCT AGCGGACATAGTTTCTCCCCGTCCAAAGGACCATAAAGCTGATGCAACCATTGCAGGGCGAGCAAGTGAGTAAATATTGT GTTGTTCTTGTTCTACTTTTTAATTAATCATCCATACTTTACTAATTAGGTTGTATTTGATTTCAGTATTCAAGAGGCCC TTTTATCTTGAGTTTCTGAAGTTCTGCTTTGAGAAATTTGAAGTTGGTATATGGTCTTCAAGGACGAAGTACGACTTAAC TAACTTCTTGTGTTCCTTTTCTCTGTCTCATTTCTGTTTTACAAAGATTAAAACTTCCCTCTTTTACTTCTTGGATCTTG TAGATTTTTAACAATGTGCTGTAGTATAAACTTGACTCCGGTTTTGGTGTTGTCATAGGAAAAATGTTCAACGAGTTATT GATTATTTGATGGGAGACATGAAAAACAAGTTGCTTTTCTGTTGGGTAAGCATTTGTTTAGCTTTTTGTCTCTGGTTCCT CATTGATTACTTGGTTTATTAAATTTTGTATGAATATTACATATTTGTAGATGTGAGATTTTGGGCAACAATGTTAGTAA TAGTAATGAGCGGCATTGAATTTTCATGTTGTATTAAGATTGCTTGCTGATCTTGCCATTCGTGGAAATTTAGTTTAGAT ATTAATTTTATATCTTCTTCCTTTTCTTCTCGTGTCCTCACTTTATGCAAAGTCGCAAACCATGAATTACACCAGTTCAC ATTTCTGCAGGTCTACTACAGTCGTATCATGAGATCCATGTATATATTATTGTTTAACCTACTTTTGTTAGAGGTAAACC CTTTTCTGCTTCTGATTCTATATTTTGTTGACTTCTTCAGGATCTTTCTCATTGTACCGAAACAAGTTTCAGAACTCTTG AAAACAAGCACAAGCCTTTGGTTTTTAAGGATTTGAGGAAGCTTTGGGAGAAGCATGATCCTGATCTTCCATGGGAAAAG GGATATTATAATGAATTAAATACATTGCTATTGGATGATTCTCCATATAAAGCATTGCTCAATCCTGTAAATAAACTAAC TTTTTTTGTTTCTTTTCGTGTTTAAGCAGGCTTTCTTCAGCAATACCATTTCCTAACCTTTTTTTTGAATGTTTTGATCA ATTATTTTAGCCAAACACCTCAGTCTTTCCTCATTCATTCACTTATCAGAATAAAAGCGACAATTCATTAGGTAAAAACA TTTGTACATAACCACTAGTATCTTAATTAATTGAATGACAAGAATATGCTCAAGACTTGGCTATATCCAGCTAATGGATT ATGGCACGCTTGGCTGATTCCAATTTCTTTTCTTATACATTCATTTATTTACTTGACATATATTTTCTTTAGCTCTCTTT TGGGTTGACTCTTGTAGTGATCCTGGAAAAGGAAGGCCAGAAAGAAATTTCTTTGATGGTTTTACATGGCTTACTTCAAA ACATAACTAAGTGGTCATTTCTGCATTCTTATTAAACTTCCTTTTAGTGTGAGACTAAAGCCTTTTTGGTTTACTGTTAG GAAGTATGATAACAGTAAAATAACACATCCCGATGCACTTTTTGTTGAAGTAACAAGTTGTTACTTCAATAAAAAGCGCA CCGGAATGTGTTATTTTCCCGTTTTCATACTTTCTAAGGTAAACCAAACAAACTCTTTTGCGCAGTTTATAGTTATGCAA CATCAAAGATACATTGAATGAACTGTAATTATTTTTGGGTTGCTGTTAAAGTGCCATATCATCTTGTAGTGGCTACCTTT ATGCTTTTTAAATCTGATTGAGTATGTTAGATCAATAATGTAACTATGATTCATGACAGCTGCTGGAGGCGATCTGCGAG AATATCTACATCGATTGGCAAATGCTGAAGATATGCCCAAGTACATTGAGGAACACCCATTTGGCCAAGACGGTATCACC GAAAAAAGTGAATCATGGAACTTCTATCTCCAGGTTATTAGTAGCCTTTTAGACTGTCAACCTGAAGATAATCCATCTGT CAATAAACATTCTGTCTGCTGAATGAGTCAGAGCAGTTTTCAAAGAGAAATTGAGATATAAGAGGCTTTTCATCTGTTTT TTTTTTCTTATCCGTGATACAACAATTGTTTTATAGACTTCTTGGATGCACAACAAAGAGCACTTGTTGGAGCTTATTCA ATACTTTTTCTAGTAGATAAGCTATAGTAAGTGCTCTTTAGTCTGTATCCAGATGAGATCTTAGTCCTTAAACATAATTT TGTTGAATTTGAATGATGTTTTTATTAGGAAATTTATCATTTTTCATATTTATACTATGGATGTTTAGGATTCCTTTAGG AAGTATTAATGGCATTTATGAACTGCTTACGATTATCGATTGCTTAGCTTTCAGATGTAGGGCTTGGTATTCTTAAATAA TTTTCTCACACTATACTCAATGTTATCAGTTAGTTAGGATTGATTTTCAGTATTTCTTTTTAAACCTTTTTTTAAAGAAA ACCTTTTAGATTTGTTGCCTCTGATGCATTTTTGTTCTTAAGTAACTTGGTCTGTTGTATTACTGCATCAGAGCAAACTA CCTAAGCTAGGATTAGCCAATTTGGTGAGTTACAGACCTCATGACACAAGAATGTGAGAGCAATTTTTTGCTTTTGGCCG AATGACTTGTTTTTTGGGGTTTAATACACGTGTCATCTTCCGGAGGCAATTGCGTTTAAACCGAAAACATTCACAACTTG ATAAGAAACAACTAGACTGGAGGAACTGAATTTTCTAATTTATAATGGACATTTTACAGTCAATTGGAAACATTTCTGGA GAGTGGAAACTGGGACAAGGAGACAAGTTTGTACAGCTAGTGTAATAATCATAACTAAGACTTTATGTGTCTATATTCTG ATAATAGACTGAGTCAACAAAATTTTGTATGTGAACAACTTTGTGCAAGTAGCTTGCTGCCCTGCTTGGTTTCTTGGTTA TTTTCTGTTATAACCTATATTAAAATCATTTTTTTGGAAGGTCTTGTTTAACACAACATTATAACTTTCTATTAGTGAGT ATTTGCAGTTAAACCATTGCTATATCTATTCTTTTAAACTAAAAAATTGTAAAAATGAAATTGACTTAGCTTGTACATTT GTTTGTGTTTCAAGTTTGAAAACTCATGGATGAAGTGCATGTTGAGTCAAGCTGTAACTTCACTGATGGCAAGAAAGTTA GGATGAAGTTTCTTCCACTCTCCAAAATGGCAAGAGATGTGTGTAAGAGAGTGATAGAAAGAGTGAAAAAAGAAGATGCA CTTGATGACCTTTGAGCATGCCATGGTACCTTACTACCTCATTATTCTCCTCTGACTGCTCTACCAAGGACCCATCTTTA GTAATTTGGTTCTTTGCCCATACCAAAATATTCTGTTTTGGTCTAAAATGATTAATTCAGCACTTCTCTGTAACATATGA TAATGACACATTATAGCAATCATCCACATAGCAATTATATTGGTCATATAGAACCATGGATGCTCTTTGAGGCTATAGCT GACAATTGACATCCACTAGTTCTATAGACCGATTCCTACGTGAGTGATTTAGAGATGCATAATTAAATTACTTGGTTTCA TCCTGCAATAAGCATGGAGTGTTTCACCCTGTGTAATTTTTTAAAAAATTGAGCAGAGAGTACCTCCGATCCACATGTGG TGGTGTTAGGTCGAGAACACGGTGGTTTGATGTACGTCCATGGTAGTGCACGGCGGGAGATGTACTTGCACAAAATACCC GAACGTTTAAATAAGC
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0267000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATATCCATGCATTACAAAGCAGTAAAATAGTCTGTGACATTCCATTGGAAGGTGTTAAAAATACACTGAATACTGA GTCAACTGTAGCAGATGAAAGAAAGAATAACAAGGAGTTTTCTTCTTATACTAATCAAATGAAGATGGTACCTACTTCTG TCATAAACGAAGAGCTTAGTTCAGAAACTTTGGGAATTTCTTTGGTTAGAACACAAGTTGGAAGCTTGAAGAAAAAACTT CTTGTTCTTGATATAAATGGGTTGCTAGCGGACATAGTTTCTCCCCGTCCAAAGGACCATAAAGCTGATGCAACCATTGC AGGGCGAGCAATATTCAAGAGGCCCTTTTATCTTGAGTTTCTGAAGTTCTGCTTTGAGAAATTTGAAGTTGGTATATGGT CTTCAAGGACGAAGAAAAATGTTCAACGAGTTATTGATTATTTGATGGGAGACATGAAAAACAAGTTGCTTTTCTGTTGG GATCTTTCTCATTGTACCGAAACAAGTTTCAGAACTCTTGAAAACAAGCACAAGCCTTTGGTTTTTAAGGATTTGAGGAA GCTTTGGGAGAAGCATGATCCTGATCTTCCATGGGAAAAGGGATATTATAATGAATTAAATACATTGCTATTGGATGATT CTCCATATAAAGCATTGCTCAATCCTCCAAACACCTCAGTCTTTCCTCATTCATTCACTTATCAGAATAAAAGCGACAAT TCATTAGCTGCTGGAGGCGATCTGCGAGAATATCTACATCGATTGGCAAATGCTGAAGATATGCCCAAGTACATTGAGGA ACACCCATTTGGCCAAGACGGTATCACCGAAAAAAGTGAATCATGGAACTTCTATCTCCAGGTTATTAGTAGCCTTTTAG ACTGTCAACCTGAAGATAATCCATCTGTCAATAAACATTCTGTCTGCTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0267000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDIHALQSSKIVCDIPLEGVKNTLNTESTVADERKNNKEFSSYTNQMKMVPTSVINEELSSETLGISLVRTQVGSLKKKL LVLDINGLLADIVSPRPKDHKADATIAGRAIFKRPFYLEFLKFCFEKFEVGIWSSRTKKNVQRVIDYLMGDMKNKLLFCW DLSHCTETSFRTLENKHKPLVFKDLRKLWEKHDPDLPWEKGYYNELNTLLLDDSPYKALLNPPNTSVFPHSFTYQNKSDN SLAAGGDLREYLHRLANAEDMPKYIEEHPFGQDGITEKSESWNFYLQVISSLLDCQPEDNPSVNKHSVC
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.1000
19 270 252 3.8E-50
IPR023214
PANTHER
PTHR12210:SF134
21 297 277 5.5E-136 –
PANTHER
PTHR12210
21 297 277 5.5E-136 –
ProSiteProfiles
PS50969
74 255 182 26.562
IPR004274
SUPERFAMILY
SSF56784
76 265 190 1.15E-23
IPR036412
SMART
SM00577
77 240 164 2.0E-7
IPR004274
Pfam
PF03031
79 261 183 1.1E-24
IPR004274

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0267000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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