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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0267200 |
| Transcript ID | LotjaGi2g1v0267200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Eukaryotic translation initiation factor 3 subunit M; TAIR: AT5G15610.2 Proteasome component (PCI) domain protein; Swiss-Prot: sp|Q54KZ8|EIF3M_DICDI Eukaryotic translation initiation factor 3 subunit M; TrEMBL-Plants: tr|A0A072U6R5|A0A072U6R5_MEDTR Eukaryotic translation initiation factor 3 subunit M; Found in the gene: LotjaGi2g1v0267200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:73695236..73699738) extracted from Lotus japonicus Gifu genome v1.2.
TACTTCTCTATAGCTTTTAACAGGATCGGAGAAACTAGGGTTTTGGAATTGTGTTATTGCACTGTGTCTGCGAGCGAGGT GATAAGCAAGGTTTCGAATCTCGCAGCAGTCACACAGAGACCATGACGACGGTGGTTCCAACCTCCGAAGAAGACGCCGC CCTCTCCGTCGTCAGATTCGCCTCCGAGCTCGCCTGGGCCGATGCCGGTCCCGAGGTACTCCTCCTCATTCTCTCACATC ATGCTTTTTCCCCCTTCTTACTCTCGTTTTCTTCTTCTCGATTCTAATCGTGATAATCAGTTTCTATTCGTTCGTTTTTC GCCATTGAACAAGTGAAATTGGGTCGAATTTTTTGGTATTTGTTTGGTTTTGGTGAAGATTTTCAGCTAGAATGGCGTAT TCATAACGTTTTGTGTGTGTATGCTTCCTGAACTTGAAAACTGAATCTGGGTTTATGAATCCGATGAGTTTAGGCGTGTT TGTTATCATTATGGACAGTTCTAGAAGTTTCATTAGATGCATTTTGATGTTTTGAAAATATAATGTTGGGAAATGATGTT TTGAAAATATAATGTTGAAAATACACAAACTGTTGAGTTGGAAATATTGGGATGGTCCTTTTCTTTTGATTTGCCTCTGT TTTCTTTTTGGTTTTGTTTATGGGTTTGTTAGATTGGTTGTTTTGTTTGTATTTCTGCGCGTGTATGAATCATGGGTTTA TGACTGCTGCTGCCTTGGACTGTCAGGTTGCTGAGCCACAAGTTAGTAGACTCTGTTTGGAGGCTGAAGAATTCATTGCT ATGGGAAAGTGGTTGGAGCTAGCTTCATTGATGATCACTTCTGCTGAATTGATTTTCGCAAAGGTTTCTGAAAAAGGTAC CATTCTATTGTGTTGCTCGATATATCTATTTTTTAAGTCTGAGGTATTCTTGGCCTTGGTAATCAATTATTGCATTCTTC TTGTATGATGGCCTCATGTTTTTTCCAATGCTATCATTTGATTTTAGCTGAAATTCTTTTTCCAATTTTGCTACCTTTGT TGATTATATACTGTTTACATGTCATATTCTCTTAGCCTTTTTTCTTGTTTATGTTGCATTTGTGGCTGTTTTTTTGGCAT TGCATTTCTACTTTCTAGTTTAGAATCAAATTTGATGTTGCATTGGGAATTGCCCAGTTTGATAATATGGACATGAATGT TTCCAGCTGAATGTGACTGTGTTAACACGATCTGCTTATCTCTTATCCCAGATGTAGAGTCCATCTTTACTATTATCTGC AATCTTGTTACAAAGACTGAGAATCCAGATGAGGTGATGGAGATTGTAAAAGTTATAACTGCAAAGATAGTTCAGCAGCC CAATGAAAAGCCAGCTGTGCGATTGAAGATGTAAGATTATATCCTACTTGGTTTAGAAATTTATTATCTTGATGTAATGC ATGCTACCGTGATTGCTTATTATTTTTAGAAATATCTTCTTTTATTTGCAGTTTGATCAATCTGTATAATCTTTTGAAGA CTCCATACTGCCAGTTTTATGTCTACATGAAGCTGTTGAATTTAGCAGTTGATGGAAAAGTCACAGAATACATCATACCT TCTTTCAAAAAGATTGATAGCTTCTTGAAAGATTGGAAAATTGGGATACCTGAACAGAGAGAGCTGTTCCTAACTGTCTC TAATATTTTGAAGGAAAATAAAAGGTATAGCTGAAGGTGCAGGCCTCTGAACATCAGTTTATTATGCTCTGTTTATCTCT CTTTGAAGTAAGAATGTAACTTCAATTTCTTTTCATGAGCACCACTCCCCCTTATTTCCATCTTGCCACCTCCATTTCTT AATATGAAAAATATTAATTATATTCCATGTTTTTATCCCAGCATGTCAAAGGATTCCTTTAAGTTCCTCACCAATTATCT GGTGACTTTTAATGGAGAAGATGCAAATGTTTTGAGTGAAGCCAAGGAGGAGGCTGTGCGTGCTATTGTGGATTTTGTGA GGGCTCCTGATGTTTTTCAGGTAACTTGGTCTAATTATGAGATTTGAATAATAGCATGAACTTACTATTTCAGCTTCCTA CACTGCTCAATAATCTTTTGCTCAAATATCTTTAGGATTTACTGCAGACAATAGTAATATGCTCCCATTTCTCACGTATT TTTTTAATGCTTCCTTTGCTTTGGTGGTGCTTGAGCTTCTCATCTTTTTGGTCTCTATAGAAAACAGAAATAAGAAACAG TGAAACATAACAGTTTGTAGCTTAGTACTAAAACCGAGAAGGATATAAGGATGCTTTCTTTTTGTAATATGTCATCTTCG TTTATAACTTCTGTTTGCCTTTTGGATTTTTGTCTATTTTCTTGTCATTATCTATCTTACACTTATATATCTAAGTTTGT TGTTTTTTATGTTATGGTTGGCAGTGTGATTTACTAGACTTTCCTGCTGTTGGGCAATTGGAGAAGGATGCCAAATATGC TTTGTTATATCAGCTTCTCAAGATATTTCTCTCTCAGAGGCTGGATGCATACATAGAATATCATACTGCAAATTCTGCGC TGTTGAAAAGCTATGGTAAGCTATGTTCATGCATAATTGATTATCTGTGGTTATATTTGCGGAGCTATATTTCACTTCCC TTTATATTAGTACTAAAGTATTTGATTAAATGATGTTTCTAGGCCTTGTTCATGAAGATTGCATTTCCAAAATGAGGCTG ATGTCATTGGTGGATCTCAGCTCTGATGCATCTGGCCAAATTCCATACGAAGTTATTAGGGACACACTTAGGGTAGATTT CCATTTGCCTTCTGTTTGCATTTGCTTTCTTAATTTCTTACTATCATAGTTTAAATGTTGACACTTCCCTTTCAGATCAA TGATGATGAGGTGGAACTATGGGTGGTTAAAGCAATAACTGCCAAGTTAATTGACTGTAAGATGGACCAAATGAATCAAG TTGTAGTTGTTAGGTACGTTCACCTCAACCAAGTCCTAGCTTTAAGATAGACCAAATGAATTTGCCCCATACTAGCTGTC CTTACACTGTGGGCACGTGGAAATGCACCCGGTGGCGCTATTTCTGTTCATCATTATATATTTCTTCATGTTCAAAAATC TCTTAGCTGCTGTTATAAATGATTTAATGCGAGTTTTACAATTTGCAGTCATCACACTGATCGTGTGTTCGGTCAGCATC AATGGCAAACACTGAGAACTAAGCTAGCGTCATGGAGGGTAAAGAGTTTCTCATTTATGATTTTCAAAATTATAAATTCA ATGTTGTTGATTCATAATAAGTGTCTACAATTACTATTTCTACACAGCCATTTTGAAGAAATAACTTGTATAGGTTATAC TTATAGGGCACATAACATGCTTATCTAATAATTGAATTTATGAACTTATTTTTAAAGAAAAATTTCTTAAGGATAATTTT TTAAAATCAGAATTACAACAAATAATTAGTTTTAATATCATAACCAATATTTTAGTTTAGGATTTAAAAAAGCCTGTAAA TTTGAATATCTCATGTTATGCAGCCCTTTCAGTGTTTTGTAGATAATTTTGACCCAAAACTTCTTATACCATGAATAGTG TATATTTCTGGAATGTAGCACTTATTATTCTGGAGATTGCTTGCTTCTCCCCGTGTAATAATTTTTTTGTTTACTGAAGT GCATTAATATCAGTGTTATCAAATATCCGCCATGGCAGAATCTCATGGCGGGGTTTTGGCTCCTCCACCATGGCCGATAT CCTGCCATATGCCGCCATAATCCTCTGTCGACCATTATTAGTTGTTAAATATATGGTGGGTTTTTGGCTCTCTGCCACGG TCCGCCATCCAACATTTAAAACTTTGATTAATGTGCATGTTCTATATGATTATATGTTGGTGCACTTGATTGCAAGAATT TTGATTGTAATCAGATGAAATGCCATTGTTCTAACATTAGCATGTTTTTTTTTGGTTGCACATTAGCATGGGTTTTGATT TATTTTCTTATTACTTGTTTTCTATTTCCAGGGAAATATTTCGAATGTGATCAGTACTATTCAGGCCAACAAAGTAACAG AGGATGGGTCCCAGGCAGCCCAAGGCTTGGTTGTTCGCTAAGGACGTTTTTGGCTGAAGCATTTGTCTGAAGCATCTAGA TTTAGTCCCAGTTTCATATTCTCTTGAAAGAGAGGAAAAGATTGTAATTTTACCTGTTGCAACTCTTCCATTTACTTTAG TTGGCAGAATTGTACTACCAACTTTGCGATTTTGATTTGTGCGGGTATATTTTACCGGTTGACAGTGACCCTAGTAATCA ATGACAACTATTGAAAGTTTAAACTAGTTTTTTCAATTAAAACTCTGTTTACTCTAGTGTTTTTCTAAAGAAATTTTACA GTGGATACCTAGACTTGGCAAGTCTCTGATATGGAGTCAGTCAGTTTTGAGAGGAATATACGTTTTTTGAAACTAGTTGA CATTTGGTTTATACTATAGTGTA
CDS sequence (LotjaGi2g1v0267200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGACGGTGGTTCCAACCTCCGAAGAAGACGCCGCCCTCTCCGTCGTCAGATTCGCCTCCGAGCTCGCCTGGGCCGA TGCCGGTCCCGAGGTTGCTGAGCCACAAGTTAGTAGACTCTGTTTGGAGGCTGAAGAATTCATTGCTATGGGAAAGTGGT TGGAGCTAGCTTCATTGATGATCACTTCTGCTGAATTGATTTTCGCAAAGGTTTCTGAAAAAGATGTAGAGTCCATCTTT ACTATTATCTGCAATCTTGTTACAAAGACTGAGAATCCAGATGAGGTGATGGAGATTGTAAAAGTTATAACTGCAAAGAT AGTTCAGCAGCCCAATGAAAAGCCAGCTGTGCGATTGAAGATTTTGATCAATCTGTATAATCTTTTGAAGACTCCATACT GCCAGTTTTATGTCTACATGAAGCTGTTGAATTTAGCAGTTGATGGAAAAGTCACAGAATACATCATACCTTCTTTCAAA AAGATTGATAGCTTCTTGAAAGATTGGAAAATTGGGATACCTGAACAGAGAGAGCTGTTCCTAACTGTCTCTAATATTTT GAAGGAAAATAAAAGCATGTCAAAGGATTCCTTTAAGTTCCTCACCAATTATCTGGTGACTTTTAATGGAGAAGATGCAA ATGTTTTGAGTGAAGCCAAGGAGGAGGCTGTGCGTGCTATTGTGGATTTTGTGAGGGCTCCTGATGTTTTTCAGTGTGAT TTACTAGACTTTCCTGCTGTTGGGCAATTGGAGAAGGATGCCAAATATGCTTTGTTATATCAGCTTCTCAAGATATTTCT CTCTCAGAGGCTGGATGCATACATAGAATATCATACTGCAAATTCTGCGCTGTTGAAAAGCTATGGCCTTGTTCATGAAG ATTGCATTTCCAAAATGAGGCTGATGTCATTGGTGGATCTCAGCTCTGATGCATCTGGCCAAATTCCATACGAAGTTATT AGGGACACACTTAGGATCAATGATGATGAGGTGGAACTATGGGTGGTTAAAGCAATAACTGCCAAGTTAATTGACTGTAA GATGGACCAAATGAATCAAGTTGTAGTTGTTAGTCATCACACTGATCGTGTGTTCGGTCAGCATCAATGGCAAACACTGA GAACTAAGCTAGCGTCATGGAGGGGAAATATTTCGAATGTGATCAGTACTATTCAGGCCAACAAAGTAACAGAGGATGGG TCCCAGGCAGCCCAAGGCTTGGTTGTTCGCTAA
Protein sequence (LotjaGi2g1v0267200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTVVPTSEEDAALSVVRFASELAWADAGPEVAEPQVSRLCLEAEEFIAMGKWLELASLMITSAELIFAKVSEKDVESIF TIICNLVTKTENPDEVMEIVKVITAKIVQQPNEKPAVRLKILINLYNLLKTPYCQFYVYMKLLNLAVDGKVTEYIIPSFK KIDSFLKDWKIGIPEQRELFLTVSNILKENKSMSKDSFKFLTNYLVTFNGEDANVLSEAKEEAVRAIVDFVRAPDVFQCD LLDFPAVGQLEKDAKYALLYQLLKIFLSQRLDAYIEYHTANSALLKSYGLVHEDCISKMRLMSLVDLSSDASGQIPYEVI RDTLRINDDEVELWVVKAITAKLIDCKMDQMNQVVVVSHHTDRVFGQHQWQTLRTKLASWRGNISNVISTIQANKVTEDG SQAAQGLVVR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 360 | 360 | 3.1E-219 | – | |
| PANTHER | 1 | 360 | 360 | 3.1E-219 | – | |
| Hamap | 27 | 397 | 371 | 22.389 | ||
| SUPERFAMILY | 77 | 287 | 211 | 5.18E-5 | ||
| ProSiteProfiles | 196 | 362 | 167 | 14.822 | ||
| Gene3D | 211 | 369 | 159 | 3.6E-22 | – | |
| Pfam | 260 | 358 | 99 | 1.8E-13 | ||
| SMART | 290 | 380 | 91 | 7.1E-16 | ||
| SMART | 290 | 380 | 91 | 7.1E-16 | – | |
| SUPERFAMILY | 314 | 362 | 49 | 6.53E-5 | ||
| PANTHER | 361 | 394 | 34 | 3.1E-219 | – | |
| PANTHER | 361 | 394 | 34 | 3.1E-219 | – | |
| Pfam | 363 | 391 | 29 | 1.4E-13 | ||
| Coils | 409 | 410 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Cellular component | Eukaryotic translation initiation factor 3 complex | A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs. |
Expression pattern of LotjaGi2g1v0267200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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