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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0274200 |
| Transcript ID | LotjaGi2g1v0274200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT3G25750.1 F-box SKIP23-like protein (DUF295); Swiss-Prot: sp|Q9LXZ3|FB204_ARATH F-box protein At3g56470; TrEMBL-Plants: tr|K7LDB6|K7LDB6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0274200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:74604986..74608427) extracted from Lotus japonicus Gifu genome v1.2.
CCGCTTACTTGTGAGCTTTTCTTTTGCATGTGCCAGGTTTGCGATTATTCATCTCTCGCTTGGTTTTTCCATTTCCTTGA AGATTTTCCCCAAAAGGTTTAATTTTGTTGATGGGTTTTTCAGTTTATGCATTTTTCTCTACTTGTTCTTACCCACAAGT GTTTTCTGTAAAAAAATTGGAACTTGTTTGCTTTCCGAGTTTGCGAGTGAACATTTGCAGTTCTTTATTGTATTAGCATT CTTAGGTTGAGTTGTGGAAAGTGGAAAACTGAAATTTCAACATGATCAATACCTGAATCAGATTGTCTCAGACAAGTTGT ATACATTTGATTCATGTTATTTGTGTTTTTGGCATTTGGCATTACTATTTTATTAGATTTAGACTAGTTTTTTAACCATA TGAGTACTACTGGTTTATAAATAGCATGTTTGATGACCAATATTGGCATCAGTTTATTGTTATTATGAGTACAATGGCCC TGTATTGTGGTAAACAAAACAACCATTGACAGAATAATTGATTACTTAGAATGTATTAAGTTAATGCACTAGGTGGTAGC CCTTGTATAAGTTTTACCCCCCTTTTTGATGAATTGGATGATAATTGATAACTTTATGATACTTTCTGCATCATTTTGTT CAAGGATTCTAGAAAATGCAAATAGGTTACCAAATTTACAAATGTTTTGAGCCGGGTTATTATCTATCAATTGCAGCTGA ATGTCACTACCAAACTCAAGTCGTGGAGCACTTTTACGTTGAGCTGCAATTAGCAGCCAAAGTTGCTTCGTTTCATGGAT ATTTGCACTAACCCCATTTCCTGACTTTTCCTATCCTAAATTTTTGTTTTCCTCATTTGTTAGACATATTTGGCATAAGA ACCAATTCCCCTCATTCATTTCTGACCATCATTCACATTTGTACTATGCATGTATGTATTCATCTTGTCCACCCTCAGGA GCTCATGCCTACTGATTGTGGGCAGTTTATTCAGCCATTGAAACCATTACTTGTCACTGGTGGCCCTGGGCACCTTCAAT CTCCCCCATACTCTTTCTTTCCTGTCTGGTGCTTACTCTCTGTTCAAACAACCTCTGTGTGCATTTATCAGCTCTGTTAT ATATTTTTTTTCTTTATTTTATTTGTGGTTTGGCACTCAAGCTTTCACTGTTCTAGATGATGACTTACTAACTTGGAACA TGTCTTTTAAGGCCGGCCAGCTGGCTGTCTGCTTCACACTGCTGTGTGGAATTGCTAATTAATGTCTTGAATCTTGAGTG ATGTATCAAATAGCTTTTAGGAAAATAGCATGTGACATTGTGATGATGGACTAAAAAGAATAGAATATCCAAGATGTTGT AAATTGAAGTTTGCCAGGAGTTAGTCTTGGTTCAGATAACCATGGTTGCTAAAAGTTAATGACATTATATATCATTCTTC TAATCTAAATAGTTTATTGGTTTCCCTAACACTCATGTACTCATGAGTATTTGTTTTATAAATTGATTTTCTTATGGTTA GTTAGTATACTTCCTACATATTTAGATATGTCACTCTTGCTAAATTCATTGAGATATCTTATATGAAATCGGATCCTTTC TGATTGTTTTATAAGGACTGGTATAGTGATTATATGTATTAGCACAATCGTTAATTTTATGGAAAAATAATGATATTTAA CCGAAGCTCAGTGTATTTCCAAATCCATTAAGCTTGGTAAAAGCTTCCATCCTAAGAAAACTGTTAAGCCTGACTAGCTG ATCTTAATCTTTGCATTGTATATTTGATGCATCATCCATATCATGCAGGATGCGTCCATTTCTGCTGGAAGCTATCGTCA GAAGAAGTGTTGCCAAAAGGATGAAAATAAGAAATAGAAAAAGAAAATTGAAAAGGGGATATGCAGGTGGTTCAAGTACC CCTTATTTTCTGTTGGAAGCTATCAAGAGAAGGTTTATTGCCAAACGCAGAAAAACAAGATATGGCAGAAAAAGAGAATT GGAAAATAAGTACTATGTAGATTGGTCCAGTCTCCCTCAGGGTGTACTTGAGATGGTTGCTGAAAAGCTGAGTTTTATTG ATTGTTTATCCTTCAGCAAGGTTTGTAGGAGTTGGAATTCTGTTCTTGGTGAAGAACTTCCTAATTGGCAGAGCCAGAGG CATGGGTTTCCTTGGCTTCTGGTATCAGGTCAGCAGAACCAAGAGGTTAGAACTTGTATCAGTATAATGGAGAATCGTAT TTGGGAGTTGGAGTTACCAGAGGTGAAAGGAAAATATTGTTGGGGATCATTTCGTGATTGGTTGATATTGGTGAAAAATC TGGATACTTTCCAACTTGAAGTTAACTTGTTGAATCCATTTTCAAGAAGTGAAGTTAGTCTTCCTACAATGTGGAACTTT TACCATAAAATGGTGCTCTCAGGGCTTCCCTCTGAGAATAACTTCATTTGTATGGTTCTACACAGCCAGCACCGGGAGCT GGCGTTTTGGATTCCAGGGGCTCAATCATGGCGTAAACATAAACTAAAAGGTGAACCTTTTGAGGACGCTGTATTATGTA ATGGAAGTTTTTATCTCCTGGGTGATGGATTCAACATATGGCAAATTGATGTTAAAAGCATCTACTCTAGCATTAGTCAA GGGGATTCTGAGATAGAAATGCAGTTTCATGAAGTAAAAGGGCCTGAGATACAGTTCCAAGAAGGGATGCTAGTACAGGG TGATGATAACAGTCGATTTTTAAAATATCTTGTGGAGTTCTCTGGGAAGCTTTTGCTTGTGCATAGGTATTTTAGCAACA AACCAGGTGTGGTACTCGAGACTCGAAAGTTCGAGGTTTATTCATTGGATTATTGTCAGCCATCTTGGAAGAAGGTTGAG GATTTGGGGGATCAAATGATATTTCTGGGAAAATGCAGTTCAGCATCCTTCTCTGCAAAGGAACTTGGAGTTGGAATTAG CAACAGCATATATTTCTGCAATGATCAAACTGCTCCTTGGTGGAATGAGTGGGATTCTGATCATTTCAAAGGGATATCAC TTCGTCTTGGCTTAAATAAGACTGATGGAGGTCATTGGGGAAATTTCAGACTTTACAATATGGATGGTGAGCCGTTTTTC TACCACGGTGATATACACAGTTGGGCATATACCTGGCTTACTGCACCTTCATGGTGGTGTTACAGAAATGTTCCTGTGAT ATCAACTAGATAATCTCATTCCCCTATGTTAGAAATAGATGCAATGTGGACTTATAGTTTTTGTCCTTATTAGGATGTTT GTATTTTGAAAAGCTTATAATCAATGTTCAAGAGAGCATTTGATTGAAAAGTTGTTGTGTAAAAATTTCAGAAAAATCAG AAGACACATGAGCAGTCAGTGGACTTGGCTTCTTTTGGTATTGCACATCCTCTTATGATATGTCTATTTTGGTAAATTCC TC
CDS sequence (LotjaGi2g1v0274200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGTCCATTTCTGCTGGAAGCTATCGTCAGAAGAAGTGTTGCCAAAAGGATGAAAATAAGAAATAGAAAAAGAAAATT GAAAAGGGGATATGCAGGTGGTTCAAGTACCCCTTATTTTCTGTTGGAAGCTATCAAGAGAAGGTTTATTGCCAAACGCA GAAAAACAAGATATGGCAGAAAAAGAGAATTGGAAAATAAGTACTATGTAGATTGGTCCAGTCTCCCTCAGGGTGTACTT GAGATGGTTGCTGAAAAGCTGAGTTTTATTGATTGTTTATCCTTCAGCAAGGTTTGTAGGAGTTGGAATTCTGTTCTTGG TGAAGAACTTCCTAATTGGCAGAGCCAGAGGCATGGGTTTCCTTGGCTTCTGGTATCAGGTCAGCAGAACCAAGAGGTTA GAACTTGTATCAGTATAATGGAGAATCGTATTTGGGAGTTGGAGTTACCAGAGGTGAAAGGAAAATATTGTTGGGGATCA TTTCGTGATTGGTTGATATTGGTGAAAAATCTGGATACTTTCCAACTTGAAGTTAACTTGTTGAATCCATTTTCAAGAAG TGAAGTTAGTCTTCCTACAATGTGGAACTTTTACCATAAAATGGTGCTCTCAGGGCTTCCCTCTGAGAATAACTTCATTT GTATGGTTCTACACAGCCAGCACCGGGAGCTGGCGTTTTGGATTCCAGGGGCTCAATCATGGCGTAAACATAAACTAAAA GGTGAACCTTTTGAGGACGCTGTATTATGTAATGGAAGTTTTTATCTCCTGGGTGATGGATTCAACATATGGCAAATTGA TGTTAAAAGCATCTACTCTAGCATTAGTCAAGGGGATTCTGAGATAGAAATGCAGTTTCATGAAGTAAAAGGGCCTGAGA TACAGTTCCAAGAAGGGATGCTAGTACAGGGTGATGATAACAGTCGATTTTTAAAATATCTTGTGGAGTTCTCTGGGAAG CTTTTGCTTGTGCATAGGTATTTTAGCAACAAACCAGGTGTGGTACTCGAGACTCGAAAGTTCGAGGTTTATTCATTGGA TTATTGTCAGCCATCTTGGAAGAAGGTTGAGGATTTGGGGGATCAAATGATATTTCTGGGAAAATGCAGTTCAGCATCCT TCTCTGCAAAGGAACTTGGAGTTGGAATTAGCAACAGCATATATTTCTGCAATGATCAAACTGCTCCTTGGTGGAATGAG TGGGATTCTGATCATTTCAAAGGGATATCACTTCGTCTTGGCTTAAATAAGACTGATGGAGGTCATTGGGGAAATTTCAG ACTTTACAATATGGATGGTGAGCCGTTTTTCTACCACGGTGATATACACAGTTGGGCATATACCTGGCTTACTGCACCTT CATGGTGGTGTTACAGAAATGTTCCTGTGATATCAACTAGATAA
Protein sequence (LotjaGi2g1v0274200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRPFLLEAIVRRSVAKRMKIRNRKRKLKRGYAGGSSTPYFLLEAIKRRFIAKRRKTRYGRKRELENKYYVDWSSLPQGVL EMVAEKLSFIDCLSFSKVCRSWNSVLGEELPNWQSQRHGFPWLLVSGQQNQEVRTCISIMENRIWELELPEVKGKYCWGS FRDWLILVKNLDTFQLEVNLLNPFSRSEVSLPTMWNFYHKMVLSGLPSENNFICMVLHSQHRELAFWIPGAQSWRKHKLK GEPFEDAVLCNGSFYLLGDGFNIWQIDVKSIYSSISQGDSEIEMQFHEVKGPEIQFQEGMLVQGDDNSRFLKYLVEFSGK LLLVHRYFSNKPGVVLETRKFEVYSLDYCQPSWKKVEDLGDQMIFLGKCSSASFSAKELGVGISNSIYFCNDQTAPWWNE WDSDHFKGISLRLGLNKTDGGHWGNFRLYNMDGEPFFYHGDIHSWAYTWLTAPSWWCYRNVPVISTR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 64 | 452 | 389 | 1.1E-135 | – | |
| PANTHER | 64 | 452 | 389 | 1.1E-135 | – | |
| ProSiteProfiles | 69 | 116 | 48 | 9.895 | ||
| Gene3D | 71 | 110 | 40 | 8.8E-9 | – | |
| Pfam | 71 | 108 | 38 | 9.7E-8 | ||
| SUPERFAMILY | 71 | 108 | 38 | 3.66E-6 | ||
| SMART | 75 | 115 | 41 | 1.5E-5 | ||
| Pfam | 355 | 401 | 47 | 1.6E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0274200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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